ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21d03 |
|---|---|
| Clone Library Name | barley_pub |
>HXD3_MOUSE (P09027) Homeobox protein Hox-D3 (Hox-4.1) (MH-19)| Length = 417 Score = 33.1 bits (74), Expect = 0.16 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 5/28 (17%) Frame = +3 Query: 150 PSSSS-----GATVPLNHRHGPCSPAPT 218 PSS+S A +P NH HGPC P PT Sbjct: 367 PSSASVDYSCAAQIPGNHHHGPCDPHPT 394
>ABDB_DROME (P09087) Homeobox protein abdominal-B (P3) (Infraabdominal 7)| (IAB-7) (PH189) Length = 493 Score = 33.1 bits (74), Expect = 0.16 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 6/69 (8%) Frame = +3 Query: 66 SAAGEQSYKILSTSSLKPQAVCSEP--KGIPS---SSSGATVPLN-HRHGPCSPAPTKKE 227 SAA QS + STSS +P S +G PS SSSGA+ L+ GPC+P P E Sbjct: 321 SAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCTPNPGLHE 380 Query: 228 PTFEERLRR 254 T + +R+ Sbjct: 381 WTGQVSVRK 389
>HXD3_HUMAN (P31249) Homeobox protein Hox-D3 (Hox-4A)| Length = 416 Score = 33.1 bits (74), Expect = 0.16 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 5/28 (17%) Frame = +3 Query: 150 PSSSS-----GATVPLNHRHGPCSPAPT 218 PSS+S A +P NH HGPC P PT Sbjct: 366 PSSASVDYSCAAQIPGNHHHGPCDPHPT 393
>BOSS_DROVI (Q24738) Protein bride of sevenless precursor| Length = 893 Score = 32.3 bits (72), Expect = 0.28 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%) Frame = +3 Query: 24 LLLLSCI-ICHALIASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGAT 173 L+ +SCI +CHA+ A+ ++S + T KPQ V S IP+++ G+T Sbjct: 20 LITISCIDLCHAVGAATPTKKSPPVRIT---KPQPVSSTTTAIPTTNEGST 67
>YJF1_YEAST (P47046) Hypothetical 91.3 kDa protein in TDH1-MTR4 intergenic| region Length = 822 Score = 31.2 bits (69), Expect = 0.62 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = +3 Query: 141 KGIPSSSSGATVPLNHRHGPCSPAPTKKEPT---FEERLRRDTLRAGYVQRKFSRNHRGG 311 K I S + + + H+ GP S + K+P+ F + + ++ G + ++ RN Sbjct: 217 KTISSDENSNSSVIRHKLGPISTSKCPKKPSHSHFSKLKKYNSFFLGPKENRYKRN---- 272 Query: 312 GVLQSEAVKVPTELGSPQDTLEYV 383 +A KVPTE S + +YV Sbjct: 273 ---TQQATKVPTEKKSNHRSSQYV 293
>ECM21_YEAST (P38167) Extracellular matrix protein 21| Length = 1117 Score = 30.8 bits (68), Expect = 0.81 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 126 VCSEPKGIPSSSSGATVPLNHRHG-PCSPAPTKKEPTFEERLRRDTLR 266 + S P SS S + LN G P P+PTKK + ++R R T+R Sbjct: 4 ITSRPVAKNSSHSLSETDLNQSKGQPFQPSPTKKLGSMQQRRRSSTIR 51
>PNCB_XYLFT (Q87EC4) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 394 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -1 Query: 341 HLDRLRLQDPAAAVVPGELPLDVAG 267 HLDR LQ A++ VPGE+ LD+ G Sbjct: 89 HLDRKYLQLRASSQVPGEIELDIRG 113
>CHCH6_MOUSE (Q91VN4) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 6 Length = 273 Score = 30.4 bits (67), Expect = 1.1 Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 13/94 (13%) Frame = +3 Query: 96 LSTSSLKPQAVCSEPK---------GIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEER- 245 LS S + CS+P G SS+ TVPL P PAPT PT Sbjct: 30 LSESVVNRMKDCSQPSAGEQLVPGFGPSSSAPVPTVPLPAISVPTVPAPTTPVPTAPSSS 89 Query: 246 ---LRRDTLRAGYVQRKFSRNHRGGGVLQSEAVK 338 L T + K GGG LQS AVK Sbjct: 90 VRGLPGGTCKGPLTDVKVPSAESGGG-LQSSAVK 122
>SDHD_BACAN (Q81S85) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 446 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +3 Query: 204 SPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGGGVLQSEAVKVPTELGSPQDTLEYV 383 SP + EERL+R A Y+ + F GG+++S VK+P+ S + E Sbjct: 40 SPLSEENVKDAEERLKRF---ASYIAKVFPETKDTGGIIESPLVKIPSMKQSLEKNYEQP 96 Query: 384 I 386 I Sbjct: 97 I 97
>UBP32_HUMAN (Q8NFA0) Ubiquitin carboxyl-terminal hydrolase 32 (EC 3.1.2.15)| (Ubiquitin thioesterase 32) (Ubiquitin-specific-processing protease 32) (Deubiquitinating enzyme 32) (NY-REN-60 antigen) Length = 1604 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 66 SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLNHRHGPCSPAPT 218 S+AGE+ + + S + S PKG PSSS SG + P + P S T Sbjct: 1349 SSAGEEDVLLSKSPSSLSANIISSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1401
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Frame = +3 Query: 117 PQAVCSEPKGIPSSSSGATVPLNHRHGPCS-PAPTKKEPTFEERLRRDTLRAGYVQRKFS 293 PQA C + + + T P++H+ PCS P K P S Sbjct: 1800 PQASCIKRQRATGNPGSLTAPIDHK--PCSAPLEPKSRP--------------------S 1837 Query: 294 RNHRGGGVLQSEAVKVPTELGSPQ 365 RN R G V E++ E SPQ Sbjct: 1838 RNQRWGAVRADESLTAIPEPASPQ 1861
>HXA3_HETFR (Q9IA21) Homeobox protein Hox-A3| Length = 410 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = +3 Query: 138 PKGIPSSSSGATVPLNHRHGPCSPAPT 218 P G + + NH HGPC P PT Sbjct: 361 PSGNMDYNGAGPMTSNHHHGPCDPHPT 387
>PMPB_CHLTR (O84418) Probable outer membrane protein pmpB precursor| (Polymorphic membrane protein B) Length = 1754 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Frame = +3 Query: 63 ASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEE 242 A A + + +TS+ + V S PSSS+ +++ L SPA + KE T + Sbjct: 638 ADTAEQPAAASAATSTPESAPVVSTALSTPSSSTVSSLTLLAASSQASPATSNKE-TQDP 696 Query: 243 RLRRDTLRAGYVQRKFSRN--HRGGGVLQSEA 332 D L V S+N +GGG+ +A Sbjct: 697 NADTDLLIDYVVDTTISKNTAKKGGGIYAKKA 728
>HXD3_CHICK (O93353) Homeobox protein Hox-D3| Length = 413 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +3 Query: 132 SEPKGIPSSSSGA-TVPLNHRHGPCSPAPTKKEPT 233 S P SGA + NH HGPC P PT + T Sbjct: 361 SHPPSANMDYSGAGPMGNNHHHGPCDPHPTYTDLT 395
>HXA3_CHICK (Q7T3J5) Homeobox protein Hox-A3| Length = 413 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%) Frame = +3 Query: 132 SEPKGIPSSSSGA-TVPLNHRHGPCSPAPTKKEPT 233 S P SGA + NH HGPC P PT + T Sbjct: 361 SHPPSANMDYSGAGPMGNNHHHGPCDPHPTYTDLT 395
>UBP6_HUMAN (P35125) Ubiquitin carboxyl-terminal hydrolase 6 (EC 3.1.2.15)| (Ubiquitin thioesterase 6) (Ubiquitin-specific-processing protease 6) (Deubiquitinating enzyme 6) (Proto-oncogene TRE-2) Length = 1406 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 66 SAAGEQSYKILSTSSLKPQAVCSEPKGIPSSS--SGATVPLNHRHGPCSPAPT 218 S+AG++ + + S + S PKG PSSS SG + P + P S T Sbjct: 1147 SSAGKEDMLLSKSPSSLSANISSSPKGSPSSSRKSGTSCPSSKNSSPNSSPRT 1199
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 102 TSSLKPQAVCSEPKGI-PSSSSGATVPLNHRHGPCSPAPTKKEPT 233 T+ LKP++ S P PSSS+G+ P PAP K PT Sbjct: 661 TTELKPES--SNPNNPNPSSSAGSNPPPKSSSSDNPPAPNKPTPT 703
>ADA3_YEAST (P32494) Transcriptional adapter 3 (NGG1 protein)| Length = 702 Score = 28.5 bits (62), Expect = 4.0 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%) Frame = +3 Query: 120 QAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEERLRRDTLRAG-YVQRKFSR 296 QA +E KG S+ G T L + G + PTFEERL+R+ G Y+ Sbjct: 476 QAKLAENKG---SNGGTTSTLPQQIGWITNGINLDYPTFEERLKRELKYVGIYMNLPKDE 532 Query: 297 NHRGGG----VLQSEAVKVPTELGSPQDTLEYV 383 N+ V E ++ EL Q TL+ V Sbjct: 533 NNPNSDDPDWVTGREDDEISAELRELQGTLKQV 565
>CITE1_MOUSE (P97769) Cbp/p300-interacting transactivator 1 (Melanocyte-specific| protein 1) Length = 203 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +3 Query: 132 SEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTF 236 ++ G+P+SSSG+T P+ G + P+ K P+F Sbjct: 55 AKANGVPTSSSGSTSPI----GSPTATPSSKPPSF 85
>IF37_CAEEL (P30642) Putative eukaryotic translation initiation factor 3| subunit 7 (eIF-3 zeta) (eIF3d) Length = 570 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +3 Query: 255 DTLRAGYVQRKFSRNHRGGGVLQSEAVKVPTELGS 359 DT++ GYV R +R+ + +L ++ VK PTE S Sbjct: 472 DTMKLGYVSRNNARSTQNHSILLTQYVK-PTEFAS 505
>SHAN2_HUMAN (Q9UPX8) SH3 and multiple ankyrin repeat domains protein 2 (Shank2)| Length = 1253 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/44 (45%), Positives = 24/44 (54%) Frame = +3 Query: 63 ASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRH 194 ASA GE + STS K Q S P +PS+SSG P N+ H Sbjct: 567 ASAPGEAGRPLNSTS--KAQGPESSP-AVPSASSGTAGPGNYVH 607
>SNTG2_MOUSE (Q925E0) Gamma-2-syntrophin (G2SYN) (Syntrophin 5) (SYN5)| Length = 539 Score = 28.1 bits (61), Expect = 5.3 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 13/90 (14%) Frame = +3 Query: 150 PSS--SSGATVPLN----HRHGPCS-------PAPTKKEPTFEERLRRDTLRAGYVQRKF 290 PSS SS A+ PL H +G CS +P EP +E+R DTL + Sbjct: 171 PSSDHSSRASSPLFDSGLHLNGHCSHTAPSSPSSPIANEPKYEKRWL-DTLSVPLSMARI 229 Query: 291 SRNHRGGGVLQSEAVKVPTELGSPQDTLEY 380 SR G L+S A++V G+ L++ Sbjct: 230 SRYKAGTEKLRSSALEVLALDGASTGVLQF 259
>CCR6_HUMAN (P51684) C-C chemokine receptor type 6 (C-C CKR-6) (CC-CKR-6)| (CCR-6) (LARC receptor) (GPR-CY4) (GPRCY4) (Chemokine receptor-like 3) (CKR-L3) (DRY6) (G-protein coupled receptor 29) (CD196 antigen) Length = 374 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%) Frame = +3 Query: 24 LLLLSCIICHALIASAAGEQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGP- 200 +LLL+CI IA +S+++ S + + + +C G+ S +T N ++ Sbjct: 133 MLLLTCISMDRYIAIVQATKSFRLRSRTLPRSKIICLVVWGLSVIISSSTFVFNQKYNTQ 192 Query: 201 ----CSPAPTKKEPTFEERLRRDTLRAG 272 C P K T E +R L G Sbjct: 193 GSDVCEP----KYQTVSEPIRWKLLMLG 216
>POLG_HCVH9 (Q81754) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3010 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +3 Query: 153 SSSSGATVPLN-HRHGPCSPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGGGVLQSE 329 S++ + P+N H GPC+P+P P + L R + R+ H GV ++ Sbjct: 2052 SNTWRGSFPINAHTTGPCTPSPA---PNYTFALWRVSAEEYVEVRRLGDFHYITGV-TTD 2107 Query: 330 AVKVPTELGSPQ 365 +K P ++ SP+ Sbjct: 2108 KIKCPCQVPSPE 2119
>HPC2_YEAST (Q01448) Histone promoter control 2 protein| Length = 623 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/49 (30%), Positives = 22/49 (44%) Frame = +3 Query: 99 STSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPTFEER 245 STS P + + P GIP++ ++H P T K T E+R Sbjct: 92 STSPSGPSSSSTNPMGIPTNRFNKNTVELYQHSPSPVMTTNKTDTEEKR 140
>CN032_PONPY (Q5R623) Protein C14orf32 homolog| Length = 245 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 117 PQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPT 233 P A S P G+P S++ +TVP PAPT P+ Sbjct: 43 PSAPSSVPSGLPPSATPSTVPF-------GPAPTGMYPS 74
>CN032_HUMAN (Q8NDC0) Protein C14orf32| Length = 245 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 117 PQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPT 233 P A S P G+P S++ +TVP PAPT P+ Sbjct: 43 PSAPSSVPSGLPPSATPSTVPF-------GPAPTGMYPS 74
>Y4BJ_RHISN (P55377) Hypothetical 67.9 kDa protein y4bJ| Length = 630 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = +3 Query: 189 RHGPCSPAPTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGGGVLQSEAVKVPTELGSPQD 368 + G C P +E +F E LR R GY+ G V + E PTE SP D Sbjct: 363 KEGVC-PEEATREVSFPEALRDHLARNGYL---------GPQVAKIEETSKPTEQPSPAD 412 Query: 369 T 371 + Sbjct: 413 S 413
>SYA_MYCS5 (Q4A633) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 878 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/42 (30%), Positives = 24/42 (57%) Frame = +3 Query: 210 APTKKEPTFEERLRRDTLRAGYVQRKFSRNHRGGGVLQSEAV 335 AP +PT EE L+ + L Y+Q++ R + G+ Q++ + Sbjct: 592 APFDSKPTNEEILKVENLVKSYIQKEVDRQYLIMGIDQAKEI 633
>GATA6_CHICK (P43693) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 387 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +2 Query: 164 WSHGAVEPQAWPVLAGAHQEGAYLRGAAPP 253 WS A E ++ GAH G + A+PP Sbjct: 66 WSQPAAESPSYGAAGGAHPSGRFPYSASPP 95
>MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 486 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 57 LIASAAGEQSYKILST-SSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEP 230 L+ S GE+S K L T S ++ S PKG SS+S +H H S +P P Sbjct: 323 LLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVP 381
>MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 486 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3 Query: 57 LIASAAGEQSYKILST-SSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEP 230 L+ S GE+S K L T S ++ S PKG SS+S +H H S +P P Sbjct: 323 LLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVP 381
>HMBX1_MOUSE (Q8BJA3) Homeobox-containing protein 1| Length = 419 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 78 EQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPT 233 E S K SS + + +P+SSS AT +H SP+P+ T Sbjct: 56 EHSDKFGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDT 107
>HMBX1_HUMAN (Q6NT76) Homeobox-containing protein 1| Length = 420 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = +3 Query: 78 EQSYKILSTSSLKPQAVCSEPKGIPSSSSGATVPLNHRHGPCSPAPTKKEPT 233 E S K SS + + +P+SSS AT +H SP+P+ T Sbjct: 56 EHSDKFGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDT 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,203,795 Number of Sequences: 219361 Number of extensions: 960566 Number of successful extensions: 3864 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 3668 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3861 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
