ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21c24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ167203.2| Triticum aestivum eukaryotic translation initiation factor 5A3 mRNA, complete cds Length = 768 Score = 206 bits (104), Expect = 1e-50 Identities = 119/124 (95%) Strand = Plus / Plus Query: 7 tccgcccctcgctgccgctgcatctcgtctccaccaccccacttgccccaggacccagga 66 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| Sbjct: 25 tccgcccctcgctgccgctgcgtctcgtctccaccaccccacttgcccccggactcagga 84 Query: 67 ggatcgtaggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggc 126 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 85 ggatcgtcggagatgtcggacaccgatgagcgccacttcgagtccaaggccgactccggc 144 Query: 127 gcct 130 |||| Sbjct: 145 gcct 148
>gb|DQ234394.1| Secale sylvestre translation initiation factor 5A mRNA, complete cds Length = 636 Score = 188 bits (95), Expect = 3e-45 Identities = 104/107 (97%) Strand = Plus / Plus Query: 24 ctgcatctcgtctccaccaccccacttgccccaggacccaggaggatcgtaggagatgtc 83 |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct: 1 ctgcatctcgtctccaccaccccacttgcccccggactcaggaggatcgtcggagatgtc 60 Query: 84 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 107
>gb|DQ234393.1| Aegilops tauschii translation initiation factor 5A gene, complete cds Length = 636 Score = 188 bits (95), Expect = 3e-45 Identities = 104/107 (97%) Strand = Plus / Plus Query: 24 ctgcatctcgtctccaccaccccacttgccccaggacccaggaggatcgtaggagatgtc 83 |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct: 1 ctgcatctcgtctccaccaccccacttgcccccggactcaggaggatcgtcggagatgtc 60 Query: 84 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 107
>gb|DQ234392.1| Thinopyrum intermedium translation initiation factor 5A mRNA, complete cds Length = 636 Score = 188 bits (95), Expect = 3e-45 Identities = 104/107 (97%) Strand = Plus / Plus Query: 24 ctgcatctcgtctccaccaccccacttgccccaggacccaggaggatcgtaggagatgtc 83 |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct: 1 ctgcatctcgtctccaccaccccacttgcccccggactcaggaggatcgtcggagatgtc 60 Query: 84 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 107
>gb|DQ234390.1| Dasypyrum breviaristatum translation initiation factor 5A mRNA, complete cds Length = 637 Score = 188 bits (95), Expect = 3e-45 Identities = 104/107 (97%) Strand = Plus / Plus Query: 24 ctgcatctcgtctccaccaccccacttgccccaggacccaggaggatcgtaggagatgtc 83 |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct: 1 ctgcatctcgtctccaccaccccacttgcccccggactcaggaggatcgtcggagatgtc 60 Query: 84 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 107
>gb|DQ234391.1| Secale cereale translation initiation factor 5A mRNA, complete cds Length = 636 Score = 180 bits (91), Expect = 7e-43 Identities = 103/107 (96%) Strand = Plus / Plus Query: 24 ctgcatctcgtctccaccaccccacttgccccaggacccaggaggatcgtaggagatgtc 83 |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| Sbjct: 1 ctgcatctcgtctccaccaccccacttgcccccggagtcaggaggatcgtcggagatgtc 60 Query: 84 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 107
>gb|DQ167201.1| Triticum aestivum eukaryotic translation initiation factor 5A1 gene, complete cds Length = 1910 Score = 145 bits (73), Expect = 4e-32 Identities = 76/77 (98%) Strand = Plus / Plus Query: 54 ccaggacccaggaggatcgtaggagatgtcggacaccgatgagcaccacttcgagtccaa 113 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 150 ccaggacccaggaggatcgtcggagatgtcggacaccgatgagcaccacttcgagtccaa 209 Query: 114 ggccgactccggcgcct 130 ||||||||||||||||| Sbjct: 210 ggccgactccggcgcct 226 Score = 56.0 bits (28), Expect = 3e-05 Identities = 31/32 (96%) Strand = Plus / Plus Query: 24 ctgcatctcgtctccaccaccccacttgcccc 55 |||| ||||||||||||||||||||||||||| Sbjct: 1 ctgcgtctcgtctccaccaccccacttgcccc 32
>gb|DQ167202.1| Triticum aestivum eukaryotic translation initiation factor 5A2 gene, complete cds Length = 1679 Score = 137 bits (69), Expect = 9e-30 Identities = 75/77 (97%) Strand = Plus / Plus Query: 54 ccaggacccaggaggatcgtaggagatgtcggacaccgatgagcaccacttcgagtccaa 113 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ccaggactcaggaggatcgtcggagatgtcggacaccgatgagcaccacttcgagtccaa 197 Query: 114 ggccgactccggcgcct 130 ||||||||||||||||| Sbjct: 198 ggccgactccggcgcct 214 Score = 52.0 bits (26), Expect = 4e-04 Identities = 26/26 (100%) Strand = Plus / Plus Query: 30 ctcgtctccaccaccccacttgcccc 55 |||||||||||||||||||||||||| Sbjct: 7 ctcgtctccaccaccccacttgcccc 32
>ref|XM_469841.1| Oryza sativa (japonica cultivar-group), mRNA Length = 859 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 72 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 125
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 31084653 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 31084706
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Minus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 11411 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 11358
>emb|AJ312906.1|OSA312906 Oryza sativa mRNA for translation initiation factor, eIF-5A (eIF-5A gene) Length = 831 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 67 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 120
>emb|AJ252135.1|OSA252135 Oryza sativa mRNA for translation initiation factor eIF-5A Length = 722 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 67 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 120
>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete sequence Length = 128017 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 5294 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 5347
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 31175176 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 31175229
>dbj|AK121592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038B14, full insert sequence Length = 838 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 77 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 130
>dbj|AK060387.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G06, full insert sequence Length = 947 Score = 75.8 bits (38), Expect = 3e-11 Identities = 50/54 (92%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgc 128 ||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||| Sbjct: 83 ggagatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgc 136
>dbj|AK061867.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H10, full insert sequence Length = 961 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 78 gatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 100 gatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgcct 152
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 78 gatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 19503677 gatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgcct 19503729
>dbj|D10399.1|RIC225 Oryza sativa mRNA for initiation factor eIF-4D (225 gene), partial sequence Length = 433 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 78 gatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 43 gatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgcct 95
>dbj|AK099039.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131C14, full insert sequence Length = 981 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 78 gatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 99 gatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgcct 151
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 78 gatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 19429890 gatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgcct 19429942
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144596 Score = 73.8 bits (37), Expect = 1e-10 Identities = 49/53 (92%) Strand = Plus / Plus Query: 78 gatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||| |||| ||||||||||||||||| ||||||||| ||||||||| Sbjct: 35858 gatgtcggactccgaggagcaccacttcgagtcgaaggccgacgccggcgcct 35910
>ref|NM_194115.2| Oryza sativa (japonica cultivar-group), mRNA Length = 863 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||||| | || ||||| ||||||||||||||||||||| ||||||||| Sbjct: 81 ggagatgtcggattcggaggagcatcacttcgagtccaaggccgacgccggcgcct 136
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||||| | || ||||| ||||||||||||||||||||| ||||||||| Sbjct: 702219 ggagatgtcggattcggaggagcatcacttcgagtccaaggccgacgccggcgcct 702274 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccga 119 ||||| ||| |||| ||||||||||||||||| |||||||| Sbjct: 7595777 atgtcagactccgaggagcaccacttcgagtcgaaggccga 7595817 Score = 42.1 bits (21), Expect = 0.39 Identities = 36/41 (87%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccga 119 ||||||||| |||| ||||||||||| |||| |||||||| Sbjct: 7609802 atgtcggactccgaggagcaccacttttagtcgaaggccga 7609842
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||||| | || ||||| ||||||||||||||||||||| ||||||||| Sbjct: 40750 ggagatgtcggattcggaggagcatcacttcgagtccaaggccgacgccggcgcct 40805
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||||| | || ||||| ||||||||||||||||||||| ||||||||| Sbjct: 22026 ggagatgtcggattcggaggagcatcacttcgagtccaaggccgacgccggcgcct 22081
>dbj|AK058206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A08, full insert sequence Length = 863 Score = 63.9 bits (32), Expect = 1e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 75 ggagatgtcggacaccgatgagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||||||| | || ||||| ||||||||||||||||||||| ||||||||| Sbjct: 81 ggagatgtcggattcggaggagcatcacttcgagtccaaggccgacgccggcgcct 136
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 50.1 bits (25), Expect = 0.002 Identities = 37/41 (90%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccga 119 ||||| ||| |||| ||||||||||||||||| |||||||| Sbjct: 101187 atgtcagactccgaggagcaccacttcgagtcgaaggccga 101227 Score = 42.1 bits (21), Expect = 0.39 Identities = 36/41 (87%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccga 119 ||||||||| |||| ||||||||||| |||| |||||||| Sbjct: 115212 atgtcggactccgaggagcaccacttttagtcgaaggccga 115252
>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087, complete sequence Length = 124300 Score = 50.1 bits (25), Expect = 0.002 Identities = 34/37 (91%) Strand = Plus / Minus Query: 94 gagcaccacttcgagtccaaggccgactccggcgcct 130 |||||||| |||||||||||||||||| |||| |||| Sbjct: 10466 gagcaccatttcgagtccaaggccgacgccggagcct 10430
>gb|BT016590.1| Zea mays clone Contig423 mRNA sequence Length = 945 Score = 46.1 bits (23), Expect = 0.025 Identities = 41/47 (87%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccgactccgg 125 ||||||||| | || |||||||||||||| || ||||||||| |||| Sbjct: 173 atgtcggactcggaggagcaccacttcgaatcgaaggccgacgccgg 219
>gb|BT017712.1| Zea mays clone EL01N0446G03.c mRNA sequence Length = 800 Score = 46.1 bits (23), Expect = 0.025 Identities = 41/47 (87%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccgactccgg 125 ||||||||| | || |||||||||||||| || ||||||||| |||| Sbjct: 61 atgtcggactcggaggagcaccacttcgaatcgaaggccgacgccgg 107
>gb|AF516352.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform III (eIF-5A) mRNA, complete cds Length = 781 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 ||||||||||||||||||||||| Sbjct: 41 caccacttcgagtccaaggccga 63
>gb|AF516351.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform II (eIF-5A) mRNA, complete cds Length = 828 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 ||||||||||||||||||||||| Sbjct: 46 caccacttcgagtccaaggccga 68
>gb|AF516350.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform I (eIF-5A) mRNA, complete cds Length = 775 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 ||||||||||||||||||||||| Sbjct: 41 caccacttcgagtccaaggccga 63
>gb|AF266464.1|AF266464 Manihot esculenta translation initiation factor 5A mRNA, complete cds Length = 1288 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 ||||||||||||||||||||||| Sbjct: 86 caccacttcgagtccaaggccga 108
>gb|AF323604.1|AF323604 Manihot esculenta initiation factor eIF5-A mRNA, complete cds Length = 925 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 ||||||||||||||||||||||| Sbjct: 66 caccacttcgagtccaaggccga 88
>gb|AF034943.1|AF034943 Zea mays translation initiation factor 5A (TIF5A) mRNA, complete cds Length = 831 Score = 46.1 bits (23), Expect = 0.025 Identities = 41/47 (87%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccgactccgg 125 ||||||||| | || |||||||||||||| || ||||||||| |||| Sbjct: 66 atgtcggactcggaggagcaccacttcgaatcgaaggccgacgccgg 112
>gb|DQ222495.1| Solanum tuberosum clone 103C10 eukaryotic initiation factor 5A5-like mRNA, complete cds Length = 757 Score = 44.1 bits (22), Expect = 0.099 Identities = 25/26 (96%) Strand = Plus / Plus Query: 94 gagcaccacttcgagtccaaggccga 119 |||||||||||||| ||||||||||| Sbjct: 68 gagcaccacttcgaatccaaggccga 93
>gb|BT018311.1| Zea mays clone EL01T0207A06.c mRNA sequence Length = 775 Score = 44.1 bits (22), Expect = 0.099 Identities = 37/42 (88%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccgac 120 ||||||||| | || |||||||||||||| || ||||||||| Sbjct: 47 atgtcggactcggaggagcaccacttcgaatcgaaggccgac 88
>gb|AY961930.1| Picea abies eukaryotic translation initiation factor 5A (eIF5A) mRNA, complete cds Length = 848 Score = 44.1 bits (22), Expect = 0.099 Identities = 28/30 (93%) Strand = Plus / Plus Query: 90 cgatgagcaccacttcgagtccaaggccga 119 |||||| ||||| ||||||||||||||||| Sbjct: 95 cgatgatcaccagttcgagtccaaggccga 124
>emb|Y07920.1|ZMTRINF5A Z.mays mRNA for translation initiation factor 5A Length = 807 Score = 44.1 bits (22), Expect = 0.099 Identities = 37/42 (88%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccgac 120 ||||||||| | || |||||||||||||| || ||||||||| Sbjct: 75 atgtcggactcggaggagcaccacttcgaatcgaaggccgac 116
>gb|AF296083.1|AF296083 Lycopersicon esculentum eukaryotic translation initiation factor 5A-1 mRNA, complete cds Length = 715 Score = 44.1 bits (22), Expect = 0.099 Identities = 25/26 (96%) Strand = Plus / Plus Query: 94 gagcaccacttcgagtccaaggccga 119 |||||||||||||| ||||||||||| Sbjct: 68 gagcaccacttcgaatccaaggccga 93
>gb|AY103556.1| Zea mays PCO150862 mRNA sequence Length = 966 Score = 44.1 bits (22), Expect = 0.099 Identities = 37/42 (88%) Strand = Plus / Plus Query: 79 atgtcggacaccgatgagcaccacttcgagtccaaggccgac 120 ||||||||| | || |||||||||||||| || ||||||||| Sbjct: 188 atgtcggactcggaggagcaccacttcgaatcgaaggccgac 229
>dbj|AB004826.1| Solanum tuberosum mRNA for eukaryotic initiation factor 5A5, complete cds Length = 688 Score = 44.1 bits (22), Expect = 0.099 Identities = 25/26 (96%) Strand = Plus / Plus Query: 94 gagcaccacttcgagtccaaggccga 119 |||||||||||||| ||||||||||| Sbjct: 76 gagcaccacttcgaatccaaggccga 101
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 gtaggagatgtcggacaccga 92 ||||||||||||||||||||| Sbjct: 391310 gtaggagatgtcggacaccga 391290
>gb|AF225297.1|AF225297 Euphorbia esula translation initiation factor 5A mRNA, partial cds Length = 725 Score = 40.1 bits (20), Expect = 1.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 98 accacttcgagtccaaggccgactccgg 125 ||||||||||||| ||||||||| |||| Sbjct: 8 accacttcgagtctaaggccgacgccgg 35
>ref|XM_510747.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ13909 (LOC453836), mRNA Length = 1893 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 1615 ccccaggacccaggaggat 1633
>ref|XM_581914.2| PREDICTED: Bos taurus similar to UTP14, U3 small nucleolar ribonucleoprotein, homolog A (LOC505600), mRNA Length = 2508 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 accaccccacttgccccag 57 ||||||||||||||||||| Sbjct: 1932 accaccccacttgccccag 1914
>gb|AY316166.1| Bos taurus Jsd-like sequence Length = 1457 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 accaccccacttgccccag 57 ||||||||||||||||||| Sbjct: 1211 accaccccacttgccccag 1193
>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227955 Score = 38.2 bits (19), Expect = 6.1 Identities = 21/22 (95%) Strand = Plus / Minus Query: 3 atcntccgcccctcgctgccgc 24 ||| |||||||||||||||||| Sbjct: 178941 atcctccgcccctcgctgccgc 178920
>gb|AY496435.1| Brassica napus eukaryotic translation initiation factor-5A mRNA, complete cds Length = 658 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 94 gagcaccacttcgagtcca 112 ||||||||||||||||||| Sbjct: 13 gagcaccacttcgagtcca 31
>gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, complete sequence Length = 176552 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 39656 ccccaggacccaggaggat 39638
>gb|AF516356.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform VII (eIF-5A) mRNA, complete cds Length = 895 Score = 38.2 bits (19), Expect = 6.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 94 gagcaccacttcgagtccaaggccgac 120 ||||| |||||||||||||| |||||| Sbjct: 33 gagcatcacttcgagtccaaagccgac 59
>gb|AF516355.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform VI (eIF-5A) mRNA, complete cds Length = 695 Score = 38.2 bits (19), Expect = 6.1 Identities = 25/27 (92%) Strand = Plus / Plus Query: 94 gagcaccacttcgagtccaaggccgac 120 ||||| |||||||||||||| |||||| Sbjct: 32 gagcatcacttcgagtccaaagccgac 58
>gb|AF516354.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform V (eIF-5A) mRNA, partial cds Length = 427 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 |||||||| |||||||||||||| Sbjct: 48 caccactttgagtccaaggccga 70
>gb|AF516353.1| Hevea brasiliensis eukaryotic translation initiation factor 5A isoform IV (eIF-5A) mRNA, complete cds Length = 772 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 97 caccacttcgagtccaaggccga 119 |||||||| |||||||||||||| Sbjct: 45 caccactttgagtccaaggccga 67
>gb|AC106461.6| Rattus norvegicus 1 BAC CH230-208N10 (Children's Hospital Oakland Research Institute) complete sequence Length = 212829 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 cacttgccccaggacccaggagg 68 |||| |||||||||||||||||| Sbjct: 113435 cactggccccaggacccaggagg 113413
>gb|BC008882.2| Homo sapiens chromosome 16 open reading frame 59, mRNA (cDNA clone IMAGE:4301654), complete cds Length = 1475 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 805 ccccaggacccaggaggat 823
>dbj|AK128408.1| Homo sapiens cDNA FLJ46551 fis, clone THYMU3038687 Length = 2795 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 2098 ccccaggacccaggaggat 2116
>emb|CR612076.1| full-length cDNA clone CS0DL004YJ17 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1911 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 1296 ccccaggacccaggaggat 1314
>dbj|AK093788.1| Homo sapiens cDNA FLJ36469 fis, clone THYMU2015762 Length = 2157 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 1506 ccccaggacccaggaggat 1524
>emb|CR606973.1| full-length cDNA clone CS0DL012YH04 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1864 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 1248 ccccaggacccaggaggat 1266
>gb|AC008165.3|AC008165 Homo sapiens BAC clone RP11-139L10 from 7p22, complete sequence Length = 85404 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ttgccccaggacccaggag 67 ||||||||||||||||||| Sbjct: 71831 ttgccccaggacccaggag 71813
>gb|AC136777.8| Homo sapiens chromosome 8, clone RP11-63E5, complete sequence Length = 175263 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ttgccccaggacccaggag 67 ||||||||||||||||||| Sbjct: 115424 ttgccccaggacccaggag 115406
>gb|AC103954.9| Homo sapiens chromosome 8, clone CTA-366D10, complete sequence Length = 169754 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ttgccccaggacccaggag 67 ||||||||||||||||||| Sbjct: 107940 ttgccccaggacccaggag 107922
>ref|XM_220007.3| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4930521E07 (predicted) (LOC309486), mRNA Length = 1868 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 46 cacttgccccaggacccaggagg 68 |||| |||||||||||||||||| Sbjct: 197 cactggccccaggacccaggagg 175
>gb|AC110274.5| Homo sapiens chromosome 8, clone RP11-161B15, complete sequence Length = 152802 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ttgccccaggacccaggag 67 ||||||||||||||||||| Sbjct: 9144 ttgccccaggacccaggag 9126
>gb|AC093525.3| Homo sapiens chromosome 16 clone RP11-20I23, complete sequence Length = 157518 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 52 ccccaggacccaggaggat 70 ||||||||||||||||||| Sbjct: 128929 ccccaggacccaggaggat 128911
>gb|AF083074.1|AF083074 Pisum sativum peabody/Ty3-type retrotransposon gag-pol precursor (gag-pol) pseudogene, complete sequence Length = 7870 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 gtaggagatgtcggacacc 90 ||||||||||||||||||| Sbjct: 5590 gtaggagatgtcggacacc 5608
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 108 gtccaaggccgactccggc 126 ||||||||||||||||||| Sbjct: 2436451 gtccaaggccgactccggc 2436469
>emb|AL845171.5| Mouse DNA sequence from clone RP23-38N8 on chromosome 4, complete sequence Length = 229784 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 35 ctccaccaccccacttgcc 53 ||||||||||||||||||| Sbjct: 55674 ctccaccaccccacttgcc 55656 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 731,977 Number of Sequences: 3902068 Number of extensions: 731977 Number of successful extensions: 54238 Number of sequences better than 10.0: 72 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53876 Number of HSP's gapped (non-prelim): 362 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
