ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21c23 |
|---|---|
| Clone Library Name | barley_pub |
>BRWD2_HUMAN (Q9BZH6) Bromodomain and WD-repeat domain-containing protein 2| (WD-repeat protein 11) Length = 1224 Score = 53.5 bits (127), Expect = 5e-07 Identities = 37/158 (23%), Positives = 80/158 (50%) Frame = +3 Query: 69 VNGALGVFEVQGRRIRDFRPKWPSSSFASSDGLVTAMAYRLPHVVMGDRSGNIRWWDVIT 248 ++G + V+G ++D P S S +T +A++ +V+GD GN+ +WD+ Sbjct: 684 IDGQVYHLTVEGNSVKDSARIPPDGSMGS----ITCIAWKGDTLVLGDMDGNLNFWDLKG 739 Query: 249 GLSSSFSTHREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFSIFDLDSADPLANALLHPQS 428 +S THR +R+I+F+P G ++ IA+ Y++ ++D + ++L ++ Sbjct: 740 RVSRGIPTHRSWVRKIRFAP---GKGNQKLIAM--YNDGAEVWDTKEVQ-MVSSLRSGRN 793 Query: 429 PGTLVLELDWLSTRTRKDEPLVLCIAGADSSFRLVEVN 542 +L++DW ++ + +A D R++E++ Sbjct: 794 VTFRILDVDWCTSDK-------VILASDDGCIRVLEMS 824
>APAF_HUMAN (O14727) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1248 Score = 37.4 bits (85), Expect = 0.036 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +3 Query: 72 NGALGVFEVQGRRIRDFRPKWPSSSFASSDGLVTAMAYRLPHVVMGDRSGNIRWWDVITG 251 NG + ++ V + A+ G VT + + ++ G I+WW+V+TG Sbjct: 1148 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTG 1207 Query: 252 LSS-SFSTHREGIRRIKFSP 308 SS +F T+ +++I SP Sbjct: 1208 ESSQTFYTNGTNLKKIHVSP 1227
>APAF_RAT (Q9EPV5) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1249 Score = 36.2 bits (82), Expect = 0.080 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Frame = +3 Query: 72 NGALGVFEVQ-GRRIRDFRPKWPSSSFASSDGLVTAMAYRLPHVVMGDRSGNIRWWDVIT 248 NG + ++ V G+ + P A+ G VT + + ++ G ++WW+V+T Sbjct: 1148 NGEIRIWNVSDGQLLHLCAPISIEEGTATHGGWVTDVCFSPDRKMLVSAGGYLKWWNVVT 1207 Query: 249 GLSS-SFSTHREGIRRIKFSP 308 G SS +F T+ +++I SP Sbjct: 1208 GESSQTFYTNGTNLKKIHVSP 1228
>APAF_MOUSE (O88879) Apoptotic protease-activating factor 1 (Apaf-1)| Length = 1249 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 2/81 (2%) Frame = +3 Query: 72 NGALGVFEVQ-GRRIRDFRPKWPSSSFASSDGLVTAMAYRLPHVVMGDRSGNIRWWDVIT 248 NG + ++ V G+ + P A+ G VT + + + G ++WW+V T Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVAT 1207 Query: 249 GLSS-SFSTHREGIRRIKFSP 308 G SS +F T+ +++I SP Sbjct: 1208 GDSSQTFYTNGTNLKKIHVSP 1228
>PEX7_MOUSE (P97865) Peroxisomal targeting signal 2 receptor (PTS2 receptor)| (Peroxin-7) Length = 318 Score = 32.0 bits (71), Expect = 1.5 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 13/117 (11%) Frame = +3 Query: 198 VVMGDRSGNIRWWDVITGLSSSFST--HREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFS 371 VV G ++R WD+ F H IRR+KFSP +A YD T Sbjct: 209 VVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF-----HASVLASCSYDFTVR 263 Query: 372 IFDLDSADPLANALLHP-----------QSPGTLVLELDWLSTRTRKDEPLVLCIAG 509 ++ DPL + H QSP T V + W T + +P+ L + G Sbjct: 264 FWNFSKPDPLLETVEHHTEFTCGLDLSLQSP-TQVADCSWDET-IKIYDPVCLTVPG 318
>T1RX_MYCPN (P75431) Putative type I restriction enzyme MpnORFDP R protein part| 1 (EC 3.1.21.3) (MpnORFDAP) (H91_orf376) Length = 376 Score = 31.6 bits (70), Expect = 2.0 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Frame = +3 Query: 66 LVNGALGVFEVQGRRIRDFRPKWP-SSSFASSDGLV-TAMAYRLPHVVMGDRSGNIRWWD 239 LV G V V +++ + K S S++ ++ L+ + LP + D GN +W Sbjct: 294 LVKGVFLVEWVADKQLNTAKKKGEYSPSWSDTEKLIWKEKSTNLPTMTEKDEDGNFKWRK 353 Query: 240 VITGLSSSFSTHREGIRRIKF 302 +IT +S +F H E R I+F Sbjct: 354 LITDISEAFKNHFE--RFIRF 372
>PEX7_CRIGR (Q8R537) Peroxisomal targeting signal 2 receptor (PTS2 receptor)| (Peroxin-7) Length = 318 Score = 31.6 bits (70), Expect = 2.0 Identities = 33/117 (28%), Positives = 46/117 (39%), Gaps = 13/117 (11%) Frame = +3 Query: 198 VVMGDRSGNIRWWDVITGLSSSFST--HREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFS 371 VV G ++R WD+ F H IRR+KFSP +A YD T Sbjct: 209 VVTGAVDCSLRGWDLRNVRQPVFELLGHTYAIRRVKFSPF-----HASVLASCSYDFTVR 263 Query: 372 IFDLDSADPLANALLHP-----------QSPGTLVLELDWLSTRTRKDEPLVLCIAG 509 ++ DPL + H QSP T V + W T + +P+ L + G Sbjct: 264 FWNFSKPDPLLETVEHHTEFTCGLDLSLQSP-TEVADCSWDET-IKIYDPVCLTVPG 318
>PRL1_ARATH (Q42384) PP1/PP2A phosphatases pleiotropic regulator PRL1| Length = 486 Score = 31.2 bits (69), Expect = 2.6 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Frame = +3 Query: 108 RIRDFRPKWPSSSFASSDGLVTAMAYRL--PHVVMGDRSGNIRWWDVITGLS-SSFSTHR 278 R+ D R K + + D V ++ R P VV G I++WD+ G + S+ + H+ Sbjct: 285 RVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHK 344 Query: 279 EGIRRIKFSP 308 + +R + P Sbjct: 345 KSVRAMTLHP 354
>YTM1_YEAST (Q12024) Microtubule-associated protein YTM1| Length = 460 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLSSSFSTHREGIRRIKF 302 H++ G G +R WD+ + +S H IR +K+ Sbjct: 117 HIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKY 152
>Y143_SYNY3 (P74442) Hypothetical WD-repeat protein slr0143| Length = 1191 Score = 30.4 bits (67), Expect = 4.4 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +3 Query: 189 LPHVVMGDRSGNIRWWDVITGLSSSFSTHREGIRRIKFSP 308 LP + GD GN+ W+ L S H + + ++++SP Sbjct: 1009 LPQLAAGDEQGNLTLWNFDGTLIRSIVAHGDRLNQLQYSP 1048
>LIS1_RAT (P63004) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLS-SSFSTHREGIRRIK 299 H+V R I+ W+V TG +F+ HRE +R ++ Sbjct: 205 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 240
>LIS1_PANTR (Q5IS43) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLS-SSFSTHREGIRRIK 299 H+V R I+ W+V TG +F+ HRE +R ++ Sbjct: 205 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 240
>LIS1_MOUSE (P63005) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLS-SSFSTHREGIRRIK 299 H+V R I+ W+V TG +F+ HRE +R ++ Sbjct: 205 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 240
>LIS1_HUMAN (P43034) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLS-SSFSTHREGIRRIK 299 H+V R I+ W+V TG +F+ HRE +R ++ Sbjct: 205 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 240
>LIS1_BOVIN (P43033) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 30.4 bits (67), Expect = 4.4 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLS-SSFSTHREGIRRIK 299 H+V R I+ W+V TG +F+ HRE +R ++ Sbjct: 205 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 240
>TAF5_DROME (P49846) Transcription initiation factor TFIID subunit 5| (Transcription initiation factor TFIID 85 kDa subunit) (p85) (TAFII-80) Length = 704 Score = 30.0 bits (66), Expect = 5.7 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 2/122 (1%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLSSSFST-HREGIRRIKFSPVVHGDRSRGR-IAVLFYDNTF 368 +V G +R WD +TG S T H+ + + FS + GR +A D+ Sbjct: 548 YVATGSSDRTVRLWDNMTGQSVRLMTGHKGSVSSLAFS-------ACGRYLASGSVDHNI 600 Query: 369 SIFDLDSADPLANALLHPQSPGTLVLELDWLSTRTRKDEPLVLCIAGADSSFRLVEVNTD 548 I+DL + + L H + T+ D VL AG D++ L + + Sbjct: 601 IIWDLSNGSLVTTLLRHTSTVTTITFSRD----------GTVLAAAGLDNNLTLWDFHKV 650 Query: 549 TK 554 T+ Sbjct: 651 TE 652
>NUDF_EMENI (Q00664) Nuclear migration protein nudF| Length = 444 Score = 30.0 bits (66), Expect = 5.7 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLSSSF--STHREGIRRIKFSPVVHGD--RSRGRIAVLFYDN 362 H++ R G +R WDV TG S IR + SP G S GR D Sbjct: 216 HLISASRDGTLRIWDVSTGFCVKVIKSATESWIRDV--SPSFDGKWLVSGGR------DQ 267 Query: 363 TFSIFDLDSADPLANALLH 419 +++++ SA+P A L H Sbjct: 268 AITVWEVSSAEPKAALLGH 286
>DNBI_SCMVC (P13215) Major DNA-binding protein (MDBP)| Length = 1160 Score = 29.6 bits (65), Expect = 7.5 Identities = 18/69 (26%), Positives = 30/69 (43%) Frame = -2 Query: 286 MPSL*VLKEEERPVITSHHRMLPDLSPITTWGRR*AIAVTRPSEEANDDDGHFGLKSRIR 107 +P + L ++E V+ R L D+ + T+GRR + S +A D+G +R Sbjct: 493 LPQMPRLPKKEPSVVVMQSRFLNDVDVLGTFGRRYSAESKEASLDAKADEGSASTSNRTA 552 Query: 106 RPCTSNTPR 80 T R Sbjct: 553 SSSVDRTHR 561
>LIS1_MACFA (Q8HXX0) Platelet-activating factor acetylhydrolase IB alpha| subunit (PAF acetylhydrolase 45 kDa subunit) (PAF-AH 45 kDa subunit) (PAF-AH alpha) (PAFAH alpha) (Lissencephaly-1 protein) (LIS-1) Length = 409 Score = 29.6 bits (65), Expect = 7.5 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +3 Query: 195 HVVMGDRSGNIRWWDVITGLS-SSFSTHREGIRRIK 299 H+V R I+ W+V TG +F+ HRE +R ++ Sbjct: 205 HLVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 240
>PRP46_ASPFU (Q4WT34) Pre-mRNA-splicing factor prp46 (Pre-mRNA-processing| protein 46) Length = 453 Score = 29.6 bits (65), Expect = 7.5 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +3 Query: 192 PHVVMGDRSGNIRWWDVITGLSSSFST-HREGIRRIKFSP 308 P ++ G +R WD+ G + T H++G+R + P Sbjct: 283 PQIITGSLDATVRLWDLAAGKTMGVLTHHKKGVRNLAIHP 322
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/61 (26%), Positives = 25/61 (40%) Frame = +3 Query: 198 VVMGDRSGNIRWWDVITGLSSSFSTHREGIRRIKFSPVVHGDRSRGRIAVLFYDNTFSIF 377 ++ D G +++W F H+E IR FSP + + A D T I+ Sbjct: 176 MLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSP------TDNKFATCSDDGTVRIW 229 Query: 378 D 380 D Sbjct: 230 D 230
>PRP46_EMENI (Q5BE22) Pre-mRNA-splicing factor prp46 (Pre-mRNA-processing| protein 46) Length = 452 Score = 29.3 bits (64), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = +3 Query: 192 PHVVMGDRSGNIRWWDVITGLSSSFST-HREGIRRIKFSP 308 P V+ G +R WD+ G + T H++GIR + P Sbjct: 282 PQVITGSLDATVRLWDLAAGKTMGVLTHHKKGIRSLATHP 321
>AROA_ARATH (P05466) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast| precursor (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) Length = 520 Score = 29.3 bits (64), Expect = 9.8 Identities = 37/151 (24%), Positives = 59/151 (39%), Gaps = 3/151 (1%) Frame = -2 Query: 472 VRVDNQSSSKTSVPGDCGWRRAFAKGSALSRSNIENVLS*KSTAMRPLLRSP*TTGENLI 293 + V+ S + +V CG S S+S+IE L TAMRPL + G N Sbjct: 139 LNVETDSENNRAVVEGCG---GIFPASIDSKSDIELYLGNAGTAMRPLTAAVTAAGGNAS 195 Query: 292 LLMPSL*VLKEEERPV---ITSHHRMLPDLSPITTWGRR*AIAVTRPSEEANDDDGHFGL 122 ++ V + ERP+ + ++ D+ + P N + G G Sbjct: 196 YVLDG--VPRMRERPIGDLVVGLKQLGADVEC--------TLGTNCPPVRVNANGGLPGG 245 Query: 121 KSRIRRPCTSNTPRAPLTNAKAKLSDVSSEL 29 K ++ +S A L +A L DV E+ Sbjct: 246 KVKLSGSISSQYLTALLMSAPLALGDVEIEI 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,579,873 Number of Sequences: 219361 Number of extensions: 1835340 Number of successful extensions: 5218 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5043 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5217 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
