ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd21c23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464058.1| Oryza sativa (japonica cultivar-group), mRNA 672 0.0
2dbj|AK111719.1| Oryza sativa (japonica cultivar-group) cDNA clon... 672 0.0
3dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 270 5e-69
4dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 270 5e-69
5dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 270 5e-69
6ref|NM_114071.2| Arabidopsis thaliana nucleotide binding AT3G335... 88 4e-14
7gb|AC009992.7|ATAC009992 Arabidopsis thaliana chromosome III BAC... 78 4e-11
8gb|DQ103595.1| Arabidopsis arenosa clone BAC 28N14, complete seq... 78 4e-11
9gb|DQ103593.1| Olimarabidopsis pumila clone BAC 44L14, complete ... 50 0.009
10gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, compl... 44 0.54
11emb|AL592226.8| Human DNA sequence from clone RP11-16P12 on chro... 44 0.54
12ref|NM_179752.1| Arabidopsis thaliana unknown protein AT2G26610 ... 42 2.1
13gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 sect... 42 2.1
14gb|AE009952.1| Yersinia pestis KIM, complete genome 42 2.1
15gb|AC115000.7| Mus musculus chromosome 1, clone RP24-103F2, comp... 42 2.1
16gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Ho... 42 2.1
17emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 42 2.1
18emb|AJ414141.1| Yersinia pestis strain CO92 complete genome; seg... 42 2.1
19gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome ... 42 2.1
20emb|Z49968.2|CEM110 Caenorhabditis elegans Cosmid M110, complete... 42 2.1
21gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, comple... 42 2.1
22ref|XM_631937.1| Dictyostelium discoideum hypothetical protein (... 40 8.4
23gb|AC169994.1| Rhesus Macaque BAC CH250-169F18 (Children's Hosp... 40 8.4
24gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 1... 40 8.4
25ref|XM_581636.2| PREDICTED: Bos taurus similar to HBxAg transact... 40 8.4
26gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromo... 40 8.4
27ref|XM_858674.1| PREDICTED: Canis familiaris similar to Itchy E3... 40 8.4
28gb|AC146255.2| Pan troglodytes BAC clone RP43-28B2 from 7, compl... 40 8.4
29ref|XM_815114.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.4
30ref|XM_856926.1| PREDICTED: Canis familiaris similar to HBxAg tr... 40 8.4
31ref|XM_537196.2| PREDICTED: Canis familiaris similar to HBxAg tr... 40 8.4
32gb|AC006155.2| Homo sapiens BAC clone RP11-263N12 from 7, comple... 40 8.4
33emb|CR636300.2|CNS0EPXU Tetraodon nigroviridis full-length cDNA 40 8.4
34emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 i... 40 8.4
35gb|BC105442.1| Bos taurus similar to HBxAg transactivated protei... 40 8.4
36emb|AL450464.10| Human DNA sequence from clone RP11-105A22 on ch... 40 8.4
37emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chro... 40 8.4
38emb|AL139150.12| Human DNA sequence from clone RP4-678I3 on chro... 40 8.4
39gb|AF318063.2|AF318063S1 Pseudomonas fluorescens NCIMB 10586 mup... 40 8.4
40gb|AC013737.5| Homo sapiens chromosome 10 clone RP11-313B15, com... 40 8.4
41gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Ca... 40 8.4
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
43gb|AC157531.2| Pan troglodytes BAC clone CH251-277G13 from chrom... 40 8.4
44dbj|AP003229.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
45gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, com... 40 8.4
46emb|AL929177.8| Mouse DNA sequence from clone RP23-315C15 on chr... 40 8.4
47emb|AL928653.4| Mouse DNA sequence from clone RP23-410F9 on chro... 40 8.4 
>ref|XM_464058.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3443

 Score =  672 bits (339), Expect = 0.0
 Identities = 480/527 (91%)
 Strand = Plus / Plus

                                                                        
Query: 17   tactgctgcagaaagttctgatgaaacatctgaaagttttgcttttgcattagtcaatgg 76
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701  tactggtgcagaaagtactgatgaaacatctgaaagttttgcttttgcattagtcaatgg 760

                                                                        
Query: 77   tgctcttggtgtgtttgaagtgcaaggacggcgaatacgagattttaggccaaagtggcc 136
             |||||||||||||||||||| || ||||| |||||||| ||||| ||||| || |||||
Sbjct: 761  ggctcttggtgtgtttgaagtacatggacgccgaatacgggatttcaggccgaaatggcc 820

                                                                        
Query: 137  gtcatcatcatttgcctcttcagatggcctggttactgctatggcttatcgtcttcccca 196
             |||||||||||||| ||| |||||||  |||||||||||||||||||||| ||||||||
Sbjct: 821  ctcatcatcatttgcgtctgcagatgggttggttactgctatggcttatcgccttcccca 880

                                                                        
Query: 197  cgttgtgatgggtgatagatcaggcaacattcgatggtgggacgttataacgggcctttc 256
             |||||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||
Sbjct: 881  tgttgtgatgggtgatagatcaggcaatattagatggtgggatgttacaacaggcctttc 940

                                                                        
Query: 257  ttcttcttttagcactcacagggaaggcattaggaggattaagttttctcctgtcgttca 316
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 941  ttcttcttttagcactcacagggaaggcatcaggaggattaaattttctcctgttgttca 1000

                                                                        
Query: 317  tggtgatcggagtagaggacgcattgctgtgctcttctatgataatacattctctatatt 376
            ||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 1001 tggtgatcgaagtagagggcgcattgctgtgctgttctatgataatacattctcgatatt 1060

                                                                        
Query: 377  tgacctggatagtgcagatcccttggcaaatgcccttctccatccacaatctcctggcac 436
            ||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||| ||
Sbjct: 1061 tgacctggatagtgcagatcccttggcaaatgctcttcttcagccgcaatcacctggtac 1120

                                                                        
Query: 437  actcgtcttggagcttgattggttatcaacccgaacaaggaaggatgaaccacttgtatt 496
             || |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||
Sbjct: 1121 gcttgtcttggagcttgattggttgtcaacccgaacaaagaaggatgaaccgcttgtgtt 1180

                                                           
Query: 497  atgcatcgctggagctgatagcagctttcgtctggttgaagttaaca 543
            ||||||||||||||||||||| || || || ||| |||| |||||||
Sbjct: 1181 atgcatcgctggagctgatagtagtttccggctgattgaggttaaca 1227
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>dbj|AK111719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023G19, full
            insert sequence
          Length = 3442

 Score =  672 bits (339), Expect = 0.0
 Identities = 480/527 (91%)
 Strand = Plus / Plus

                                                                        
Query: 17   tactgctgcagaaagttctgatgaaacatctgaaagttttgcttttgcattagtcaatgg 76
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699  tactggtgcagaaagtactgatgaaacatctgaaagttttgcttttgcattagtcaatgg 758

                                                                        
Query: 77   tgctcttggtgtgtttgaagtgcaaggacggcgaatacgagattttaggccaaagtggcc 136
             |||||||||||||||||||| || ||||| |||||||| ||||| ||||| || |||||
Sbjct: 759  ggctcttggtgtgtttgaagtacatggacgccgaatacgggatttcaggccgaaatggcc 818

                                                                        
Query: 137  gtcatcatcatttgcctcttcagatggcctggttactgctatggcttatcgtcttcccca 196
             |||||||||||||| ||| |||||||  |||||||||||||||||||||| ||||||||
Sbjct: 819  ctcatcatcatttgcgtctgcagatgggttggttactgctatggcttatcgccttcccca 878

                                                                        
Query: 197  cgttgtgatgggtgatagatcaggcaacattcgatggtgggacgttataacgggcctttc 256
             |||||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||
Sbjct: 879  tgttgtgatgggtgatagatcaggcaatattagatggtgggatgttacaacaggcctttc 938

                                                                        
Query: 257  ttcttcttttagcactcacagggaaggcattaggaggattaagttttctcctgtcgttca 316
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct: 939  ttcttcttttagcactcacagggaaggcatcaggaggattaaattttctcctgttgttca 998

                                                                        
Query: 317  tggtgatcggagtagaggacgcattgctgtgctcttctatgataatacattctctatatt 376
            ||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct: 999  tggtgatcgaagtagagggcgcattgctgtgctgttctatgataatacattctcgatatt 1058

                                                                        
Query: 377  tgacctggatagtgcagatcccttggcaaatgcccttctccatccacaatctcctggcac 436
            ||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||| ||
Sbjct: 1059 tgacctggatagtgcagatcccttggcaaatgctcttcttcagccgcaatcacctggtac 1118

                                                                        
Query: 437  actcgtcttggagcttgattggttatcaacccgaacaaggaaggatgaaccacttgtatt 496
             || |||||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||
Sbjct: 1119 gcttgtcttggagcttgattggttgtcaacccgaacaaagaaggatgaaccgcttgtgtt 1178

                                                           
Query: 497  atgcatcgctggagctgatagcagctttcgtctggttgaagttaaca 543
            ||||||||||||||||||||| || || || ||| |||| |||||||
Sbjct: 1179 atgcatcgctggagctgatagtagtttccggctgattgaggttaaca 1225
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  270 bits (136), Expect = 5e-69
 Identities = 172/184 (93%)
 Strand = Plus / Plus

                                                                           
Query: 201     gtgatgggtgatagatcaggcaacattcgatggtgggacgttataacgggcctttcttct 260
               ||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||||||
Sbjct: 1960576 gtgatgggtgatagatcaggcaatattagatggtgggatgttacaacaggcctttcttct 1960635

                                                                           
Query: 261     tcttttagcactcacagggaaggcattaggaggattaagttttctcctgtcgttcatggt 320
               |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 1960636 tcttttagcactcacagggaaggcatcaggaggattaaattttctcctgttgttcatggt 1960695

                                                                           
Query: 321     gatcggagtagaggacgcattgctgtgctcttctatgataatacattctctatatttgac 380
               ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 1960696 gatcgaagtagagggcgcattgctgtgctgttctatgataatacattctcgatatttgac 1960755

                   
Query: 381     ctgg 384
               ||||
Sbjct: 1960756 ctgg 1960759



 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/161 (88%)
 Strand = Plus / Plus

                                                                           
Query: 383     ggatagtgcagatcccttggcaaatgcccttctccatccacaatctcctggcacactcgt 442
               ||||||||||||||||||||||||||| ||||| || || ||||| ||||| || || ||
Sbjct: 1961165 ggatagtgcagatcccttggcaaatgctcttcttcagccgcaatcacctggtacgcttgt 1961224

                                                                           
Query: 443     cttggagcttgattggttatcaacccgaacaaggaaggatgaaccacttgtattatgcat 502
               |||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 1961225 cttggagcttgattggttgtcaacccgaacaaagaaggatgaaccgcttgtgttatgcat 1961284

                                                        
Query: 503     cgctggagctgatagcagctttcgtctggttgaagttaaca 543
               ||||||||||||||| || || || ||| |||| |||||||
Sbjct: 1961285 cgctggagctgatagtagtttccggctgattgaggttaaca 1961325



 Score =  153 bits (77), Expect = 8e-34
 Identities = 98/105 (93%)
 Strand = Plus / Plus

                                                                           
Query: 17      tactgctgcagaaagttctgatgaaacatctgaaagttttgcttttgcattagtcaatgg 76
               ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1959394 tactggtgcagaaagtactgatgaaacatctgaaagttttgcttttgcattagtcaatgg 1959453

                                                            
Query: 77      tgctcttggtgtgtttgaagtgcaaggacggcgaatacgagattt 121
                |||||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 1959454 ggctcttggtgtgtttgaagtacatggacgccgaatacgggattt 1959498



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                           
Query: 123     aggccaaagtggccgtcatcatcatttgcctcttcagatggcctggttactgctatggct 182
               ||||| || ||||| |||||||||||||| ||| |||||||  |||||||||||||||||
Sbjct: 1960418 aggccgaaatggccctcatcatcatttgcgtctgcagatgggttggttactgctatggct 1960477

                                   
Query: 183     tatcgtcttccccacgttgt 202
               ||||| |||||||| |||||
Sbjct: 1960478 tatcgccttccccatgttgt 1960497



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 579     actacaaaagagagatttaggccaatgccatt 610
               ||||||| |||||| |||||||||||||||||
Sbjct: 1962062 actacaagagagaggtttaggccaatgccatt 1962093
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score =  270 bits (136), Expect = 5e-69
 Identities = 172/184 (93%)
 Strand = Plus / Plus

                                                                         
Query: 201   gtgatgggtgatagatcaggcaacattcgatggtgggacgttataacgggcctttcttct 260
             ||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||||||
Sbjct: 10784 gtgatgggtgatagatcaggcaatattagatggtgggatgttacaacaggcctttcttct 10843

                                                                         
Query: 261   tcttttagcactcacagggaaggcattaggaggattaagttttctcctgtcgttcatggt 320
             |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 10844 tcttttagcactcacagggaaggcatcaggaggattaaattttctcctgttgttcatggt 10903

                                                                         
Query: 321   gatcggagtagaggacgcattgctgtgctcttctatgataatacattctctatatttgac 380
             ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 10904 gatcgaagtagagggcgcattgctgtgctgttctatgataatacattctcgatatttgac 10963

                 
Query: 381   ctgg 384
             ||||
Sbjct: 10964 ctgg 10967



 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/161 (88%)
 Strand = Plus / Plus

                                                                         
Query: 383   ggatagtgcagatcccttggcaaatgcccttctccatccacaatctcctggcacactcgt 442
             ||||||||||||||||||||||||||| ||||| || || ||||| ||||| || || ||
Sbjct: 11373 ggatagtgcagatcccttggcaaatgctcttcttcagccgcaatcacctggtacgcttgt 11432

                                                                         
Query: 443   cttggagcttgattggttatcaacccgaacaaggaaggatgaaccacttgtattatgcat 502
             |||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 11433 cttggagcttgattggttgtcaacccgaacaaagaaggatgaaccgcttgtgttatgcat 11492

                                                      
Query: 503   cgctggagctgatagcagctttcgtctggttgaagttaaca 543
             ||||||||||||||| || || || ||| |||| |||||||
Sbjct: 11493 cgctggagctgatagtagtttccggctgattgaggttaaca 11533



 Score =  153 bits (77), Expect = 8e-34
 Identities = 98/105 (93%)
 Strand = Plus / Plus

                                                                        
Query: 17   tactgctgcagaaagttctgatgaaacatctgaaagttttgcttttgcattagtcaatgg 76
            ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9602 tactggtgcagaaagtactgatgaaacatctgaaagttttgcttttgcattagtcaatgg 9661

                                                         
Query: 77   tgctcttggtgtgtttgaagtgcaaggacggcgaatacgagattt 121
             |||||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 9662 ggctcttggtgtgtttgaagtacatggacgccgaatacgggattt 9706



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 123   aggccaaagtggccgtcatcatcatttgcctcttcagatggcctggttactgctatggct 182
             ||||| || ||||| |||||||||||||| ||| |||||||  |||||||||||||||||
Sbjct: 10626 aggccgaaatggccctcatcatcatttgcgtctgcagatgggttggttactgctatggct 10685

                                 
Query: 183   tatcgtcttccccacgttgt 202
             ||||| |||||||| |||||
Sbjct: 10686 tatcgccttccccatgttgt 10705



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 579   actacaaaagagagatttaggccaatgccatt 610
             ||||||| |||||| |||||||||||||||||
Sbjct: 12270 actacaagagagaggtttaggccaatgccatt 12301
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score =  270 bits (136), Expect = 5e-69
 Identities = 172/184 (93%)
 Strand = Plus / Plus

                                                                          
Query: 201    gtgatgggtgatagatcaggcaacattcgatggtgggacgttataacgggcctttcttct 260
              ||||||||||||||||||||||| ||| |||||||||| |||| ||| ||||||||||||
Sbjct: 100137 gtgatgggtgatagatcaggcaatattagatggtgggatgttacaacaggcctttcttct 100196

                                                                          
Query: 261    tcttttagcactcacagggaaggcattaggaggattaagttttctcctgtcgttcatggt 320
              |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 100197 tcttttagcactcacagggaaggcatcaggaggattaaattttctcctgttgttcatggt 100256

                                                                          
Query: 321    gatcggagtagaggacgcattgctgtgctcttctatgataatacattctctatatttgac 380
              ||||| |||||||| |||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 100257 gatcgaagtagagggcgcattgctgtgctgttctatgataatacattctcgatatttgac 100316

                  
Query: 381    ctgg 384
              ||||
Sbjct: 100317 ctgg 100320



 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/161 (88%)
 Strand = Plus / Plus

                                                                          
Query: 383    ggatagtgcagatcccttggcaaatgcccttctccatccacaatctcctggcacactcgt 442
              ||||||||||||||||||||||||||| ||||| || || ||||| ||||| || || ||
Sbjct: 100726 ggatagtgcagatcccttggcaaatgctcttcttcagccgcaatcacctggtacgcttgt 100785

                                                                          
Query: 443    cttggagcttgattggttatcaacccgaacaaggaaggatgaaccacttgtattatgcat 502
              |||||||||||||||||| ||||||||||||| |||||||||||| ||||| ||||||||
Sbjct: 100786 cttggagcttgattggttgtcaacccgaacaaagaaggatgaaccgcttgtgttatgcat 100845

                                                       
Query: 503    cgctggagctgatagcagctttcgtctggttgaagttaaca 543
              ||||||||||||||| || || || ||| |||| |||||||
Sbjct: 100846 cgctggagctgatagtagtttccggctgattgaggttaaca 100886



 Score =  153 bits (77), Expect = 8e-34
 Identities = 98/105 (93%)
 Strand = Plus / Plus

                                                                         
Query: 17    tactgctgcagaaagttctgatgaaacatctgaaagttttgcttttgcattagtcaatgg 76
             ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98955 tactggtgcagaaagtactgatgaaacatctgaaagttttgcttttgcattagtcaatgg 99014

                                                          
Query: 77    tgctcttggtgtgtttgaagtgcaaggacggcgaatacgagattt 121
              |||||||||||||||||||| || ||||| |||||||| |||||
Sbjct: 99015 ggctcttggtgtgtttgaagtacatggacgccgaatacgggattt 99059



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                          
Query: 123    aggccaaagtggccgtcatcatcatttgcctcttcagatggcctggttactgctatggct 182
              ||||| || ||||| |||||||||||||| ||| |||||||  |||||||||||||||||
Sbjct: 99979  aggccgaaatggccctcatcatcatttgcgtctgcagatgggttggttactgctatggct 100038

                                  
Query: 183    tatcgtcttccccacgttgt 202
              ||||| |||||||| |||||
Sbjct: 100039 tatcgccttccccatgttgt 100058



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                              
Query: 579    actacaaaagagagatttaggccaatgccatt 610
              ||||||| |||||| |||||||||||||||||
Sbjct: 101623 actacaagagagaggtttaggccaatgccatt 101654
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>ref|NM_114071.2| Arabidopsis thaliana nucleotide binding AT3G33530 mRNA, complete cds
          Length = 4259

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 263/336 (78%)
 Strand = Plus / Plus

                                                                        
Query: 51   agttttgcttttgcattagtcaatggtgctcttggtgtgtttgaagtgcaaggacggcga 110
            |||||||| |||||| |||| |||||||||||||| || |||||||| |||||||| |||
Sbjct: 2149 agttttgcatttgcactagtaaatggtgctcttggagtatttgaagtccaaggacgtcga 2208

                                                                        
Query: 111  atacgagattttaggccaaagtggccgtcatcatcatttgcctcttcagatggcctggtt 170
            || |||||||| || || || ||||| ||  | ||||| |   | ||||||||  |||||
Sbjct: 2209 attcgagatttcagacctaaatggccatctacttcattcgttccctcagatggattggtt 2268

                                                                        
Query: 171  actgctatggcttatcgtcttccccacgttgtgatgggtgatagatcaggcaacattcga 230
            || || ||||| |||||  | || || || || ||||| ||||||||||| |||||  ||
Sbjct: 2269 acagccatggcatatcgcttgcctcatgtggttatgggagatagatcaggaaacataaga 2328

                                                                        
Query: 231  tggtgggacgttataacgggcctttcttcttcttttagcactcacagggaaggcattagg 290
            |||||||| || | ||| || |  || ||| | ||||  | |||||| || || ||  ||
Sbjct: 2329 tggtgggatgtaacaacaggacagtcatctgcatttaatagtcacagagatggaatacgg 2388

                                                                        
Query: 291  aggattaagttttctcctgtcgttcatggtgatcggagtagaggacgcattgctgtgctc 350
            ||||| || ||||||||||| |||  ||| ||||| || ||||| ||  | |||||||| 
Sbjct: 2389 aggatcaaattttctcctgttgttgctggagatcgcagcagagggcgtgtagctgtgcta 2448

                                                
Query: 351  ttctatgataatacattctctatatttgacctggat 386
            ||  |||| |||||||||||| ||||||| ||||||
Sbjct: 2449 tttaatgacaatacattctctgtatttgatctggat 2484
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>gb|AC009992.7|ATAC009992 Arabidopsis thaliana chromosome III BAC T4P3 genomic sequence, complete
             sequence
          Length = 96583

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 51    agttttgcttttgcattagtcaatggtgctcttggtgtgtttgaagtgcaaggacggcga 110
             |||||||| |||||| |||| |||||||||||||| || |||||||| |||||||| |||
Sbjct: 42686 agttttgcatttgcactagtaaatggtgctcttggagtatttgaagtccaaggacgtcga 42627

                        
Query: 111   atacgagattt 121
             || ||||||||
Sbjct: 42626 attcgagattt 42616



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 78/96 (81%)
 Strand = Plus / Minus

                                                                         
Query: 289   ggaggattaagttttctcctgtcgttcatggtgatcggagtagaggacgcattgctgtgc 348
             ||||||| || ||||||||||| |||  ||| ||||| || ||||| ||  | |||||||
Sbjct: 41935 ggaggatcaaattttctcctgttgttgctggagatcgcagcagagggcgtgtagctgtgc 41876

                                                 
Query: 349   tcttctatgataatacattctctatatttgacctgg 384
             | ||  |||| |||||||||||| ||||||| ||||
Sbjct: 41875 tatttaatgacaatacattctctgtatttgatctgg 41840
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>gb|DQ103595.1| Arabidopsis arenosa clone BAC 28N14, complete sequence
          Length = 132056

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                         
Query: 51    agttttgcttttgcattagtcaatggtgctcttggtgtgtttgaagtgcaaggacggcga 110
             |||||||| |||||| |||| |||||||||||||| || |||||||| |||||||| |||
Sbjct: 35604 agttttgcatttgcactagtaaatggtgctcttggagtatttgaagtccaaggacgtcga 35663

                        
Query: 111   atacgagattt 121
             || ||||||||
Sbjct: 35664 attcgagattt 35674



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 74/92 (80%)
 Strand = Plus / Plus

                                                                         
Query: 288   aggaggattaagttttctcctgtcgttcatggtgatcggagtagaggacgcattgctgtg 347
             |||||||| || ||||||||||| |||  ||| ||||| ||  |||| ||  | ||||||
Sbjct: 36351 aggaggatcaaattttctcctgttgttgctggagatcgcagccgagggcgtgtagctgtg 36410

                                             
Query: 348   ctcttctatgataatacattctctatatttga 379
             || ||  |||| |||||||||||| |||||||
Sbjct: 36411 ctatttaatgacaatacattctctgtatttga 36442
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>gb|DQ103593.1| Olimarabidopsis pumila clone BAC 44L14, complete sequence
          Length = 118342

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                        
Query: 476  gaaggatgaaccacttgtattatgcatcgctggagctgatagcagctttcgtctggttga 535
            |||| |||| ||||||||  ||||||||||||| |||||||||| ||| || || |||||
Sbjct: 1765 gaagaatgatccacttgttctatgcatcgctggggctgatagcaccttccggctcgttga 1824

                 
Query: 536  agtta 540
             ||||
Sbjct: 1825 ggtta 1829
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>gb|AC114621.8| Mus musculus chromosome 3, clone RP24-93M7, complete sequence
          Length = 198404

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 348   ctcttctatgataatacattctctat 373
             ||||||||||||||||||| ||||||
Sbjct: 85978 ctcttctatgataatacatactctat 86003
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>emb|AL592226.8| Human DNA sequence from clone RP11-16P12 on chromosome 9 Contains a CpG
             island, complete sequence
          Length = 101339

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 137   gtcatcatcatttgcctcttca 158
             ||||||||||||||||||||||
Sbjct: 10804 gtcatcatcatttgcctcttca 10783
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>ref|NM_179752.1| Arabidopsis thaliana unknown protein AT2G26610 mRNA, complete cds
          Length = 3750

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 75/93 (80%)
 Strand = Plus / Plus

                                                                        
Query: 45   tctgaaagttttgcttttgcattagtcaatggtgctcttggtgtgtttgaagtgcaagga 104
            ||||||||||| || |||||| | || |||||| | ||||| || ||||||||  | |||
Sbjct: 1987 tctgaaagtttcgcatttgcactggtaaatggttcacttggcgtatttgaagtttacgga 2046

                                             
Query: 105  cggcgaatacgagattttaggccaaagtggccg 137
            ||  |||| |||||||| || ||||| ||||||
Sbjct: 2047 cgaagaattcgagatttcagaccaaaatggccg 2079
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>gb|AE017128.1| Yersinia pestis biovar Medievalis str. 91001 section 2 of 16 of the
              complete genome
          Length = 290803

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tttgcctcttcagatggcctg 167
              |||||||||||||||||||||
Sbjct: 157479 tttgcctcttcagatggcctg 157499
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tttgcctcttcagatggcctg 167
              |||||||||||||||||||||
Sbjct: 594545 tttgcctcttcagatggcctg 594565
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>gb|AC115000.7| Mus musculus chromosome 1, clone RP24-103F2, complete sequence
          Length = 191603

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     ctgcagaaagttctgatgaaa 42
              |||||||||||||||||||||
Sbjct: 105865 ctgcagaaagttctgatgaaa 105885
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>gb|AC108527.6| Rattus norvegicus 9 BAC CH230-7F11 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 225777

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    ctgcagaaagttctgatgaaa 42
             |||||||||||||||||||||
Sbjct: 20754 ctgcagaaagttctgatgaaa 20774
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tttgcctcttcagatggcctg 167
              |||||||||||||||||||||
Sbjct: 389951 tttgcctcttcagatggcctg 389971
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>emb|AJ414141.1| Yersinia pestis strain CO92 complete genome; segment 1/20
          Length = 288050

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tttgcctcttcagatggcctg 167
              |||||||||||||||||||||
Sbjct: 267714 tttgcctcttcagatggcctg 267734
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>gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome 5, complete sequence
          Length = 235471

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     aagttttgcttttgcattagtcaat 74
              ||||||||||||||||||| |||||
Sbjct: 229535 aagttttgcttttgcattattcaat 229511
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>emb|Z49968.2|CEM110 Caenorhabditis elegans Cosmid M110, complete sequence
          Length = 34101

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 37   atgaaacatctgaaagttttg 57
            |||||||||||||||||||||
Sbjct: 3553 atgaaacatctgaaagttttg 3573
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>gb|AC112263.4| Mus musculus BAC clone RP23-403P24 from 5, complete sequence
          Length = 189091

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 50     aagttttgcttttgcattagtcaat 74
              ||||||||||||||||||| |||||
Sbjct: 174651 aagttttgcttttgcattattcaat 174675
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>ref|XM_631937.1| Dictyostelium discoideum hypothetical protein (DDB0219271), partial
           mRNA
          Length = 1563

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 355 atgataatacattctctata 374
           ||||||||||||||||||||
Sbjct: 328 atgataatacattctctata 309
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>gb|AC169994.1| Rhesus Macaque  BAC CH250-169F18 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 169688

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    aaagttttgcttttgcatta 68
             ||||||||||||||||||||
Sbjct: 81481 aaagttttgcttttgcatta 81500
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>gb|AE014828.1| Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete
              sequence
          Length = 273275

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    ttcttcttcttttagcactc 273
              ||||||||||||||||||||
Sbjct: 184679 ttcttcttcttttagcactc 184660
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>ref|XM_581636.2| PREDICTED: Bos taurus similar to HBxAg transactivated protein 2
            (LOC505359), mRNA
          Length = 7603

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   actgctgcagaaagttctga 37
            ||||||||||||||||||||
Sbjct: 1641 actgctgcagaaagttctga 1622
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>gb|AC161821.4| Pan troglodytes BAC clone CH251-507E3 from chromosome 7, complete
             sequence
          Length = 211131

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   gataatacattctctatatttgac 380
             |||||||||||||||| |||||||
Sbjct: 21214 gataatacattctctaaatttgac 21191
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>ref|XM_858674.1| PREDICTED: Canis familiaris similar to Itchy E3 ubiquitin protein
            ligase, transcript variant 13 (LOC477199), mRNA
          Length = 2993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 558  aattctgcttctaggctgct 577
            ||||||||||||||||||||
Sbjct: 1332 aattctgcttctaggctgct 1313
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>gb|AC146255.2| Pan troglodytes BAC clone RP43-28B2 from 7, complete sequence
          Length = 163747

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   gataatacattctctatatttgac 380
             |||||||||||||||| |||||||
Sbjct: 16959 gataatacattctctaaatttgac 16936
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>ref|XM_815114.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506297.230) partial mRNA
          Length = 1746

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 136 cgtcatcatcatttgcctct 155
           ||||||||||||||||||||
Sbjct: 95  cgtcatcatcatttgcctct 114
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>ref|XM_856926.1| PREDICTED: Canis familiaris similar to HBxAg transactivated protein
            2, transcript variant 2 (LOC480075), mRNA
          Length = 8727

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   actgctgcagaaagttctga 37
            ||||||||||||||||||||
Sbjct: 1598 actgctgcagaaagttctga 1579
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>ref|XM_537196.2| PREDICTED: Canis familiaris similar to HBxAg transactivated protein
            2, transcript variant 1 (LOC480075), mRNA
          Length = 8784

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   actgctgcagaaagttctga 37
            ||||||||||||||||||||
Sbjct: 1598 actgctgcagaaagttctga 1579
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>gb|AC006155.2| Homo sapiens BAC clone RP11-263N12 from 7, complete sequence
          Length = 119996

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   gataatacattctctatatttgac 380
             |||||||||||||||| |||||||
Sbjct: 81831 gataatacattctctaaatttgac 81808
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>emb|CR636300.2|CNS0EPXU Tetraodon nigroviridis full-length cDNA
          Length = 1185

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 577 tgactacaaaagagagattt 596
           ||||||||||||||||||||
Sbjct: 57  tgactacaaaagagagattt 76
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>emb|CR382289.17| Zebrafish DNA sequence from clone DKEY-161J10 in linkage group 10,
             complete sequence
          Length = 187296

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    atgaaacatctgaaagtttt 56
             ||||||||||||||||||||
Sbjct: 91672 atgaaacatctgaaagtttt 91653
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>gb|BC105442.1| Bos taurus similar to HBxAg transactivated protein 2, mRNA (cDNA
            clone IMAGE:7988326), partial cds
          Length = 1975

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   actgctgcagaaagttctga 37
            ||||||||||||||||||||
Sbjct: 1642 actgctgcagaaagttctga 1623
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>emb|AL450464.10| Human DNA sequence from clone RP11-105A22 on chromosome 10, complete
            sequence
          Length = 36120

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 270  actcacagggaaggcattag 289
            ||||||||||||||||||||
Sbjct: 3683 actcacagggaaggcattag 3664
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>emb|AL161722.9| Human DNA sequence from clone RP11-497J7 on chromosome X Contains a
             melanoma antigen family B 4 pseudogene and a nuclear
             transcription factor Y, gamma (NFYC) pseudogene, complete
             sequence
          Length = 154594

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   ttctgcttctaggctgctga 579
             ||||||||||||||||||||
Sbjct: 89435 ttctgcttctaggctgctga 89454
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>emb|AL139150.12| Human DNA sequence from clone RP4-678I3 on chromosome 1p22.2-31.1
             Contains the 5' end of the EDG7 gene for  endothelial
             differentiation, lysophosphatidic acid G-protein-coupled
             receptor, 7 and the 3' end of the MCOLN2 gene for
             mucolipin 2, complete sequence
          Length = 133747

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 250   gcctttcttcttcttttagc 269
             ||||||||||||||||||||
Sbjct: 33466 gcctttcttcttcttttagc 33447
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>gb|AF318063.2|AF318063S1 Pseudomonas fluorescens NCIMB 10586 mupirocin biosynthetic gene cluster
          Length = 75138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 82    ttggtgtgtttgaagtgcaaggacggcg 109
             |||||||||| ||| |||||||||||||
Sbjct: 27682 ttggtgtgttggaaatgcaaggacggcg 27655
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>gb|AC013737.5| Homo sapiens chromosome 10 clone RP11-313B15, complete sequence
          Length = 203259

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 49     aaagttttgcttttgcatta 68
              ||||||||||||||||||||
Sbjct: 109815 aaagttttgcttttgcatta 109796
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>gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 182226

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     gttctgatgaaacatctgaa 50
              ||||||||||||||||||||
Sbjct: 106063 gttctgatgaaacatctgaa 106082
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 56       tgcttttgcattagtcaatg 75
                ||||||||||||||||||||
Sbjct: 30196028 tgcttttgcattagtcaatg 30196047
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>gb|AC157531.2| Pan troglodytes BAC clone CH251-277G13 from chromosome unknown,
             complete sequence
          Length = 183251

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    aaagttttgcttttgcatta 68
             ||||||||||||||||||||
Sbjct: 35590 aaagttttgcttttgcatta 35609
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>dbj|AP003229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0022F10
          Length = 150498

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     tgcttttgcattagtcaatg 75
              ||||||||||||||||||||
Sbjct: 100850 tgcttttgcattagtcaatg 100869
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>gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, complete sequence
          Length = 196936

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   tttcttcttcttttagcact 272
             ||||||||||||||||||||
Sbjct: 43077 tttcttcttcttttagcact 43058
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>emb|AL929177.8| Mouse DNA sequence from clone RP23-315C15 on chromosome X, complete
             sequence
          Length = 89361

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 549   accaagatcaattctgcttc 568
             ||||||||||||||||||||
Sbjct: 66867 accaagatcaattctgcttc 66886
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>emb|AL928653.4| Mouse DNA sequence from clone RP23-410F9 on chromosome 2, complete
             sequence
          Length = 72045

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    atctgaaagttttgcttttg 63
             ||||||||||||||||||||
Sbjct: 27035 atctgaaagttttgcttttg 27016


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,279,432
Number of Sequences: 3902068
Number of extensions: 6279432
Number of successful extensions: 126550
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126334
Number of HSP's gapped (non-prelim): 215
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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