ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21c14 |
|---|---|
| Clone Library Name | barley_pub |
>SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like 1 protein| (Chromosome-associated protein E) (XCAP-E homolog) (FGF-inducible protein 16) Length = 1191 Score = 34.3 bits (77), Expect = 0.25 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Frame = +2 Query: 275 VKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAA------KIRDDLHVLHE--DT 430 V + + + LA EET ++ L ++ E+ A AA KI D LH L E + Sbjct: 309 VNTKSQSAFDLKKKNLASEETKRKELQNSMAEDSKALAAKEKEVKKITDGLHGLQEASNK 368 Query: 431 EASVLAANTRFYNAFKNG 484 +A LAA + +NA G Sbjct: 369 DAEALAAAQQHFNAVSAG 386
>UVRC_MYCLE (Q9CCP1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 647 Score = 32.7 bits (73), Expect = 0.72 Identities = 25/81 (30%), Positives = 35/81 (43%) Frame = +2 Query: 191 CIRRLSAERIFAGVQIAASNFNRSRICHVKSGDADGYPKTEDELADEETLQRNLDRAIRE 370 C+ R+ AE+ QI A C SG D Y + L+R + A + Sbjct: 183 CVGRVGAEQ---HSQIVAD------FCDFLSGKTDRYARD---------LERKMSAAAEQ 224 Query: 371 EDYARAAKIRDDLHVLHEDTE 433 D+ RAA++RDDL L E Sbjct: 225 LDFERAARLRDDLFALKRAME 245
>SYC_STAES (Q8CTU1) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 32.3 bits (72), Expect = 0.94 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +2 Query: 254 NRSRICHVKSGDADGYP---KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL--- 409 NR + + D G P K +EL DE E L + A + +D+ARA +IRD L Sbjct: 391 NRFKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR 450 Query: 410 HVLHEDTEASV 442 H++ EDT V Sbjct: 451 HIILEDTPQGV 461
>SYC_STAEQ (Q5HRM3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 32.3 bits (72), Expect = 0.94 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +2 Query: 254 NRSRICHVKSGDADGYP---KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL--- 409 NR + + D G P K +EL DE E L + A + +D+ARA +IRD L Sbjct: 391 NRFKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR 450 Query: 410 HVLHEDTEASV 442 H++ EDT V Sbjct: 451 HIILEDTPQGV 461
>GIDRP_HUMAN (Q7Z5L2) Growth inhibition and differentiation-related protein 88| (Putative mitochondrial space protein 32.1) Length = 792 Score = 32.3 bits (72), Expect = 0.94 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = +2 Query: 287 DADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFY 466 D D P T ++ E+ + + E + D+LHV HE + +VLA T Sbjct: 304 DTDSIPATMGHISLSESTNDTVSPVMIRE-CEKNDSTADELHVKHEPPDTAVLAHETHRD 362 Query: 467 NAFKN-GDFT 493 + FKN GD T Sbjct: 363 SGFKNVGDIT 372
>UVRC_TREPA (O83485) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 691 Score = 31.6 bits (70), Expect = 1.6 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = +2 Query: 338 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVL 445 L++ + RA+R+E + AA+IRDD+ + T S++ Sbjct: 210 LEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLV 245
>UVRC_STRCO (Q9Z512) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 728 Score = 31.2 bits (69), Expect = 2.1 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +2 Query: 338 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVL 445 L+R + A E +Y RAA++RDD+ L + E S + Sbjct: 214 LERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAV 249
>SYS_PROMA (Q7VAZ8) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 31.2 bits (69), Expect = 2.1 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 299 YPKTEDELADEETLQ-RNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFYNAF 475 Y + D + + LQ RN ++ E Y +I ++L +L DTE SV A +RF F Sbjct: 113 YSECPDGKDENDNLQIRNWGNPLKGEGYKEHWEIAEELGLL--DTEKSVRIAKSRFVTLF 170 Query: 476 KNG 484 +G Sbjct: 171 NHG 173
>SYC_STAAW (Q8NXY7) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 305 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 442 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAS (Q6GBV8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 305 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 442 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAN (Q99W73) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 305 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 442 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAM (Q932G0) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 305 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 442 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAC (Q5HIE5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 305 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 442 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>FETUA_SHEEP (P29701) Alpha-2-HS-glycoprotein precursor (Fetuin-A)| Length = 364 Score = 30.8 bits (68), Expect = 2.7 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Frame = -2 Query: 529 HIVSFSPDRVHCSKISILESVVES-C---ICCKDGSFSILMEDVQIIPDFGSTGIIFFPD 362 H++ +P V+CS E VE C + +DG FS+L PD PD Sbjct: 90 HVLDPTP-LVNCSVRQQTEHAVEGDCDIHVLKQDGQFSVLFTKCDSSPDSAEDVRKLCPD 148 Query: 361 SPVQITLKGFFVS*LVFSFWIAISIPTFNMANSGS----VEVGGCNLNPCKDSLRTE 203 P+ L S +V + +A++ TFN N+GS VE+ P S+ E Sbjct: 149 CPLLAPLNN---SQVVHAAEVALA--TFNAQNNGSYFQLVEISRAQFVPLPGSVSVE 200
>SYC_STAAR (Q6GJD9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.4 bits (67), Expect = 3.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = +2 Query: 305 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 442 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_GEOKA (Q5L429) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.4 bits (67), Expect = 3.6 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Frame = +2 Query: 287 DADGYPKTEDELADEE--TLQRNLDRAIREEDYARAAKIRDDL---HVLHEDT 430 D G +DEL DEE L + + A + D+A A +IRD+L +++ EDT Sbjct: 405 DVLGLTLKQDELLDEEIEALIQKRNEARKNRDFALADRIRDELRAKNIILEDT 457
>VE2_HPV21 (P50767) Regulatory protein E2| Length = 503 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = +3 Query: 228 GFKLQPPTSTDPEFAMLKVGMLMAIQKLKTS*LTKKPFSVIWT 356 G++ PP + A +GM++ +Q L+ S K+P+S++ T Sbjct: 55 GYQYVPPLAVSESRAKQAIGMMLQLQSLQKSEYAKEPWSLVDT 97
>UVRC_MYCPA (Q741E5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 647 Score = 30.0 bits (66), Expect = 4.6 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Frame = +2 Query: 191 CIRRLSAERIFAGVQIAASNFNRSRICHVKSGDADGYPKTEDELADEETLQRNLDRAIRE 370 CI R+SAE+ V C SG D + + L++ ++ A E Sbjct: 183 CIGRVSAEQHRQIVD---------DFCDFLSGKTDRFARE---------LEQQMNAAAAE 224 Query: 371 EDYARAAKIRDDLHVLHE--DTEASVLAANT 457 D+ RAA++RDDL L + +A VL T Sbjct: 225 LDFERAARLRDDLGALKRAMEKQAVVLGDGT 255
>VE2_HPV09 (P36780) Regulatory protein E2| Length = 461 Score = 29.6 bits (65), Expect = 6.1 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = +3 Query: 228 GFKLQPPTSTDPEFAMLKVGMLMAIQKLKTS*LTKKPFSVIWTGLSGKKIMP 383 G++ PP +T + A +GM++ +Q L+ S ++P+++ T L + P Sbjct: 55 GYQPVPPLATSEQKAKDAIGMVLLLQSLQRSAYGQEPWTLAQTSLEAVRSPP 106
>GLND_ZYMMO (Q5NPH0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 926 Score = 29.6 bits (65), Expect = 6.1 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +2 Query: 320 LADEETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFYNAFKNGDFTAM 499 L QR+L A D+A A K + L +L+ T A + A +N++KN T++ Sbjct: 586 LMSHTAFQRDLADAKTITDFANAVKSPERLRLLYLLTVADISAVGPHIWNSWKNQLLTSL 645
>VE2_HPV17 (P36785) Regulatory protein E2| Length = 452 Score = 29.3 bits (64), Expect = 7.9 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +3 Query: 228 GFKLQPPTSTDPEFAMLKVGMLMAIQKLKTS*LTKKPFSVIWTGLSGKKIMP 383 G++ PP +T A +GM++ +Q L+ S K+P+++ T L + P Sbjct: 55 GYQPVPPLATSEAKAKDAIGMVLLLQSLQKSPYGKEPWTLTQTSLETVRSPP 106
>UVRC_CORGL (Q8NQ55) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 696 Score = 29.3 bits (64), Expect = 7.9 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 13/68 (19%) Frame = +2 Query: 293 DGYPKTEDELADEETLQRNLDR--AIREEDYARAAKIRDDLH-----------VLHEDTE 433 DG+ D+ T + N D A E D+ RAA++RDDL VL + T+ Sbjct: 197 DGFTSFMAGHTDKVTRKLNADMMAAAEELDFERAARLRDDLEAIDKVMEKQAVVLGDGTD 256 Query: 434 ASVLAANT 457 A ++A T Sbjct: 257 ADIIAFAT 264
>DNAK_MYCGE (P47547) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 595 Score = 29.3 bits (64), Expect = 7.9 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 281 SGDADGYPKTEDELADEETLQRNLDRAIREEDYAR 385 S DA +PK E E E L N+D AI+ DYA+ Sbjct: 533 SPDAKNFPKEEKEKL--EKLTGNIDAAIKANDYAK 565
>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor| Length = 684 Score = 29.3 bits (64), Expect = 7.9 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +2 Query: 287 DADGYPKTEDELADEE----TLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAAN 454 D D + K D++ D++ L+ L+RAI+ EDY AA+++ + + T +V Sbjct: 112 DWDRWKKHFDQVDDQDRLLSVLKSQLNRAIKREDYEDAARLK--VAIAATATNDAVGKVM 169 Query: 455 TRFYNA 472 + FY A Sbjct: 170 STFYRA 175
>UVRC_MYCTU (P67426) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 646 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +2 Query: 269 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHE--DTEASV 442 C SG D + + L++ ++ A + D+ RAA++RDDL L + +A V Sbjct: 200 CDFLSGKTDRFARA---------LEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVV 250 Query: 443 LAANT 457 L T Sbjct: 251 LGDGT 255
>UVRC_MYCBO (P67427) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 646 Score = 29.3 bits (64), Expect = 7.9 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Frame = +2 Query: 269 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHE--DTEASV 442 C SG D + + L++ ++ A + D+ RAA++RDDL L + +A V Sbjct: 200 CDFLSGKTDRFARA---------LEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVV 250 Query: 443 LAANT 457 L T Sbjct: 251 LGDGT 255
>UVRC_SYMTH (Q67T37) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 629 Score = 29.3 bits (64), Expect = 7.9 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = +2 Query: 332 ETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANT 457 E L+ +++A ++ RAA++RD + + + TE + A+T Sbjct: 204 ERLRARMEQAAERLEFERAAELRDQIRAIEKVTEKQKIIAHT 245 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,582,452 Number of Sequences: 219361 Number of extensions: 1669333 Number of successful extensions: 5709 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5704 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
