ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21c14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191261.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Plus Query: 272 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 331 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 175 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 234 Query: 332 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 391 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 235 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 294 Query: 392 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 451 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 295 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 354 Query: 452 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 511 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 355 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 414 Query: 512 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatat 560 ||||| || ||| |||| |||||| ||||||||| || |||||||||| Sbjct: 415 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatat 463 Score = 42.1 bits (21), Expect = 1.9 Identities = 48/57 (84%) Strand = Plus / Plus Query: 83 atgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 139 ||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 1 atgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 57
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Minus Query: 272 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 331 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 31602189 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 31602130 Query: 332 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 391 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 31602129 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 31602070 Query: 392 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 451 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 31602069 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 31602010 Query: 452 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 511 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 31602009 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 31601950 Query: 512 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatat 560 ||||| || ||| |||| |||||| ||||||||| || |||||||||| Sbjct: 31601949 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatat 31601901 Score = 48.1 bits (24), Expect = 0.031 Identities = 51/60 (85%) Strand = Plus / Minus Query: 80 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 139 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 31602909 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 31602850 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 tagcctgcctgcgcggctgcg 64 ||||||||||||||||||||| Sbjct: 7691310 tagcctgcctgcgcggctgcg 7691290
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Minus Query: 272 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 331 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 15921 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 15862 Query: 332 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 391 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 15861 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 15802 Query: 392 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 451 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 15801 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 15742 Query: 452 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 511 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 15741 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 15682 Query: 512 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatat 560 ||||| || ||| |||| |||||| ||||||||| || |||||||||| Sbjct: 15681 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatat 15633 Score = 48.1 bits (24), Expect = 0.031 Identities = 51/60 (85%) Strand = Plus / Minus Query: 80 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 139 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 16641 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 16582
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Minus Query: 272 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 331 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 115212 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 115153 Query: 332 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 391 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 115152 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 115093 Query: 392 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 451 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 115092 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 115033 Query: 452 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 511 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 115032 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 114973 Query: 512 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatat 560 ||||| || ||| |||| |||||| ||||||||| || |||||||||| Sbjct: 114972 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatat 114924 Score = 48.1 bits (24), Expect = 0.031 Identities = 51/60 (85%) Strand = Plus / Minus Query: 80 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 139 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 115932 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 115873
>dbj|AK099571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035E10, full insert sequence Length = 1066 Score = 161 bits (81), Expect = 3e-36 Identities = 237/289 (82%) Strand = Plus / Plus Query: 272 catgttaaaagtggggatgctgatggctatccaaaaactgaagacgagttagctgacgaa 331 |||||||||||||| ||||||||||| || |||| |||||||| || | |||||| Sbjct: 242 catgttaaaagtggagatgctgatggttacccaacgactgaagatttgtcaattgacgag 301 Query: 332 gaaacccttcagcgtaatttggacagggctatccgggaagaagattatgcccgtgctgcc 391 |||||||| ||||||||||| | | || |||| ||||||||||||| |||| ||||| Sbjct: 302 gaaaccctgcagcgtaatttacagacagccatccaggaagaagattattcccgggctgca 361 Query: 392 aaaatccgggatgatctgcacgtcctccatgaggatactgaagcttccgtccttgcagca 451 || || |||||||||||| | |||||||||| ||||| |||||||| ||||||||||| Sbjct: 362 aagataagggatgatctgcgcatcctccatgaagataccaaagcttccctccttgcagca 421 Query: 452 aatacacgattctacaacgctttcaagaatggagattttactgcaatgaactctatctgg 511 || ||||| || ||||| |||||||||||||| ||| || | || ||| ||||| | ||| Sbjct: 422 aacacacggttttacaatgctttcaagaatggcgatcttgcagcgatgtactctttatgg 481 Query: 512 gctaaaggagactatgtgtatgttgtccatcctggggcaggtcggatat 560 ||||| || ||| |||| |||||| ||||||||| || |||||||||| Sbjct: 482 gctaagggtgaccatgtatatgttatccatcctgctgcgggtcggatat 530 Score = 48.1 bits (24), Expect = 0.031 Identities = 51/60 (85%) Strand = Plus / Plus Query: 80 gcgatgtcggcggcgcaggctgcgagcgccatctcgcggccgtccgcgagtgcgcggctc 139 |||||||| ||||||| ||||||||||| | | |||||||||||||| ||||||||| Sbjct: 49 gcgatgtctgcggcgccggctgcgagcggctggttgcggccgtccgcgaccgcgcggctc 108
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 69 cttatttcccggcgatgtcggcggcg 94 ||||||||||||||| |||||||||| Sbjct: 2483857 cttatttcccggcgaggtcggcggcg 2483882
>emb|AL646097.25| Mouse DNA sequence from clone RP23-338M9 on chromosome 11 Contains the 3' end of the Gas7 gene for growth arrest specific 7, the Rcvrn gene for recoverin, the Glp2r gene for glucagon-like peptide 2 receptor, a novel gene and the gene for a novel protein (1110001P11Rik), complete sequence Length = 212636 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 gaagcttccgtccttgcagcaaatac 456 |||||||||||||| ||||||||||| Sbjct: 36166 gaagcttccgtcctcgcagcaaatac 36191
>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence Length = 165778 Score = 44.1 bits (22), Expect = 0.49 Identities = 25/26 (96%) Strand = Plus / Minus Query: 47 cctgcctgcgcggctgcgacgactta 72 ||||||||||||||||||| |||||| Sbjct: 37879 cctgcctgcgcggctgcgatgactta 37854
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 44 tagcctgcctgcgcggctgcg 64 ||||||||||||||||||||| Sbjct: 101886 tagcctgcctgcgcggctgcg 101866
>ref|XM_528933.1| PREDICTED: Pan troglodytes similar to FLJ42925 protein (LOC473561), mRNA Length = 1419 Score = 40.1 bits (20), Expect = 7.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 94 gcaggctgcgagcgccatctcgcggccg 121 |||||| ||||||||| ||||||||||| Sbjct: 1317 gcaggcggcgagcgccctctcgcggccg 1290
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttcccggcgatgtcggcggc 93 |||||||||||||||||||| Sbjct: 35190411 ttcccggcgatgtcggcggc 35190430
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttcccggcgatgtcggcggc 93 |||||||||||||||||||| Sbjct: 69172 ttcccggcgatgtcggcggc 69191
>ref|XM_389780.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09604.1) partial mRNA Length = 1908 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 acacgattctacaacgcttt 474 |||||||||||||||||||| Sbjct: 1051 acacgattctacaacgcttt 1070
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ccatctcgcggccgtccgcg 127 |||||||||||||||||||| Sbjct: 196224 ccatctcgcggccgtccgcg 196205
>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24, complete sequence Length = 158366 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 taaaagtggggatgctgatg 296 |||||||||||||||||||| Sbjct: 73494 taaaagtggggatgctgatg 73475
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ttcccggcgatgtcggcggc 93 |||||||||||||||||||| Sbjct: 35280483 ttcccggcgatgtcggcggc 35280502
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 atctcgcggccgtccgcgag 129 |||||||||||||||||||| Sbjct: 1345091 atctcgcggccgtccgcgag 1345072 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,103,685 Number of Sequences: 3902068 Number of extensions: 4103685 Number of successful extensions: 117436 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117142 Number of HSP's gapped (non-prelim): 279 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
