ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21b19 |
|---|---|
| Clone Library Name | barley_pub |
>YMB8_YEAST (Q03730) Hypothetical 43.7 kDa protein in OST6-PSP2 intergenic| region Length = 393 Score = 36.6 bits (83), Expect = 0.029 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +3 Query: 9 RWCLGLIYIVAIAGIWIAASYIVQSVV--DGGVSPFLITYICNSLFVVYI 152 RW LGL+ + + +W+ +S+++ + D PF ITY + F+ Y+ Sbjct: 12 RWTLGLLMLGLVIILWVLSSFLINLIFEDDSYRKPFFITYTNTAAFIFYL 61
>YMHA_CAEEL (P34478) Hypothetical protein F58A4.11| Length = 747 Score = 32.7 bits (73), Expect = 0.42 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +3 Query: 246 ADLESVNLLERSEREGNAAS-PQ-SEDNVASDANFPIHTELAVADCSKGLDAKG 401 A+L ++N L R++ + PQ S+DN+ + NFP H + + + G DA G Sbjct: 418 ANLAALNQLARNQMQPTPPPVPQVSQDNIINTLNFPAHIKQEIMNAPHGTDANG 471
>YNAI_ECOLI (P0AEB5) MscS family inner membrane protein ynaI| Length = 343 Score = 32.0 bits (71), Expect = 0.71 Identities = 19/71 (26%), Positives = 36/71 (50%) Frame = +3 Query: 24 LIYIVAIAGIWIAASYIVQSVVDGGVSPFLITYICNSLFVVYIPIVEFARYFEDSIDNLW 203 LIY + I+ + +Y++++ ++P +I +IC SL V + I F + N + Sbjct: 48 LIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFL------LINQF 101 Query: 204 SKLKGKDGADL 236 K + K G D+ Sbjct: 102 EKQQIKKGRDI 112
>YNAI_ECO57 (P0AEB6) MscS family inner membrane protein ynaI| Length = 343 Score = 32.0 bits (71), Expect = 0.71 Identities = 19/71 (26%), Positives = 36/71 (50%) Frame = +3 Query: 24 LIYIVAIAGIWIAASYIVQSVVDGGVSPFLITYICNSLFVVYIPIVEFARYFEDSIDNLW 203 LIY + I+ + +Y++++ ++P +I +IC SL V + I F + N + Sbjct: 48 LIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFL------LINQF 101 Query: 204 SKLKGKDGADL 236 K + K G D+ Sbjct: 102 EKQQIKKGRDI 112
>THUM2_MOUSE (Q9CZB3) THUMP domain-containing protein 2| Length = 498 Score = 31.6 bits (70), Expect = 0.93 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 6/111 (5%) Frame = -2 Query: 369 RQLALCG*GSLHL--KPHCLQTEVRLHCPPARFSLEDSRSPSQRAAA----GLHHPCLST 208 R L CG S+ L K H + E++ P R D+ SPSQRA++ G PC Sbjct: 384 RHLTDCGGSSIPLTSKGHIAEPEMKTLSNPDRTGAPDTASPSQRASSVQCLGRMRPC--G 441 Query: 207 STTGCR*NPRSTEQTQLWECKQQTENCICR*SKREKHRHPRQTERCSLQQS 55 S S +T + CK + S E H TE ++Q+S Sbjct: 442 SLVPVESFKVSLGKTDAFICKYKKAQA-SGLSSAECHEPGAHTEMAAMQES 491
>INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.10.1) (IR) (CD220| antigen) [Contains: Insulin receptor alpha subunit; Insulin receptor beta subunit] Length = 1382 Score = 31.2 bits (69), Expect = 1.2 Identities = 19/66 (28%), Positives = 26/66 (39%) Frame = -2 Query: 390 PTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAAAGLHHPCLS 211 PT C R L G C++T CPP + +D R + LHH C + Sbjct: 249 PTKCVACRNFYLDG--------RCVET-----CPPPYYHFQDWRCVNFSFCQDLHHKCKN 295 Query: 210 TSTTGC 193 + GC Sbjct: 296 SRRQGC 301
>PC11X_PONPY (Q6WXV7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/87 (25%), Positives = 34/87 (39%) Frame = -2 Query: 417 EHVSSALLHPTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAA 238 +H SS+ + C+ L+ + H P QT H PP ++ SP Sbjct: 1159 DHSSSSQAQASALCHSPPLSQAS--TQHHSPPVTQTIALCHSPPVTQTIALCHSPPPIQV 1216 Query: 237 AGLHHPCLSTSTTGCR*NPRSTEQTQL 157 + LHH T R +P S + + L Sbjct: 1217 SALHHSPPLVQATALRHSPPSAQASAL 1243
>TNR19_MOUSE (Q9JLL3) Tumor necrosis factor receptor superfamily member 19| precursor (Toxicity and JNK inducer) (TRADE) Length = 416 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = +2 Query: 41 YCGHMDCCKLHRSVCRGWRCFSLFDHLHMQFSVCCLHSHS*VCSVLRGFYRQPVVEVER 217 +C H CC+ HR ++ +H+ S+CC + S +VL R P ER Sbjct: 228 HCAHRACCQYHRDSA------PMYGPVHLIPSLCCEEARSSARAVLGCGLRSPTTLQER 280
>GLPK_PSETO (O87924) Glycerol kinase (EC 2.7.1.30) (ATP:glycerol| 3-phosphotransferase) (Glycerokinase) (GK) Length = 503 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Frame = -2 Query: 297 HCPPARFSLEDSRSPSQRAAAGLHHPCLS---------TSTTGCR*NPRSTEQTQLWECK 145 H P F+ + + A AGLHH ++ T+ + R +W+C+ Sbjct: 51 HDPMEIFATQSAVMVEALAQAGLHHDQVAAIGITNQRETTVVWDKVTGRPIYNAIVWQCR 110 Query: 144 QQTENCICR*SKREKH 97 + TE IC+ KR+ H Sbjct: 111 RSTEIQICQQLKRDGH 126
>MCH1_NEUCR (Q9P3K8) Probable transporter MCH1| Length = 598 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +3 Query: 159 VEFARYFEDS--IDNLWSKLKGKDGADLQQPADLESVNLLERSEREGNAASPQSEDNVAS 332 +E + Y + S + W+ + GA Q P D+ES +L+ S+ + ++ S + +DN Sbjct: 279 LERSGYLDGSTFLQGSWTADRPGYGAIEQSPLDMESAGILDPSKPDNDSDSEEEDDNARI 338 Query: 333 DANFPIHTE 359 + ++ E Sbjct: 339 KKTWVLNAE 347
>NOP12_EMENI (Q5BDC8) Nucleolar protein 12| Length = 520 Score = 30.4 bits (67), Expect = 2.1 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = +3 Query: 183 DSIDNLWSKLKGKDGADLQQPADLESVNLLERSEREGNAASPQSEDNVASD--ANFPIHT 356 + ++ + + K+ Q+ E + LE +G SPQSED + D A+ P H Sbjct: 115 EDLEESYMRRLAKEEQKEQKKRRAERSSSLEEESEDGEKESPQSEDGESEDEGADIPKHE 174 Query: 357 ELAVA 371 LA A Sbjct: 175 ALAGA 179
>PC11Y_HUMAN (Q9BZA8) Protocadherin-11 Y-linked precursor (Protocadherin-11)| (Protocadherin-22) (Protocadherin on the Y chromosome) (PCDH-Y) (Protocadherin prostate cancer) (Protocadherin-PC) Length = 1340 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/87 (25%), Positives = 34/87 (39%) Frame = -2 Query: 417 EHVSSALLHPTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAA 238 +H SS+ + C+ L+ + H P QT V H PP ++ SP Sbjct: 1152 DHSSSSQAQASALCHSPPLSQAS--TQHHSPPVTQTIVLCHSPPVTQTIALCHSPPPIQV 1209 Query: 237 AGLHHPCLSTSTTGCR*NPRSTEQTQL 157 + LHH T +P S + + L Sbjct: 1210 SALHHSPPLVQGTALHHSPPSAQASAL 1236
>RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistance to| Peronospora parasitica protein 13) Length = 835 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = +3 Query: 147 YIPIVEFARYFEDSIDNLWSKLKGKDGADLQQPADLESVNLLERSEREG 293 Y+ VE AR ED + WSKL D++ D + L ERS+R G Sbjct: 44 YLKDVE-AREREDEVSKEWSKLVLDFAYDVEDVLDTYHLKLEERSQRRG 91
>PC11X_HUMAN (Q9BZA7) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) (PCDH-X) (Protocadherin-S) Length = 1347 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/87 (24%), Positives = 33/87 (37%) Frame = -2 Query: 417 EHVSSALLHPTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAA 238 +H SS+ + C+ L+ + H P QT H PP ++ SP Sbjct: 1159 DHSSSSQAQASALCHSPPLSQAS--TQHHSPRVTQTIALCHSPPVTQTIALCHSPPPIQV 1216 Query: 237 AGLHHPCLSTSTTGCR*NPRSTEQTQL 157 + LHH T +P S + + L Sbjct: 1217 SALHHSPPLVQATALHHSPPSAQASAL 1243
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = +2 Query: 44 CGHMDCCKLHRSVCRGWRCFSLFDHLHMQFSVCC--LHSHS*VCSVLRGFYRQPVVEVER 217 CG D C RC + + H+Q S C H+ S SV++ F+ +P + E Sbjct: 1247 CGAEDVVPFQCPACDFQRCQACWQR-HLQASRMCPACHTASRKQSVMQVFWPEPHKDHEG 1305 Query: 218 QGWCRPAAA 244 G RP AA Sbjct: 1306 AGGARPVAA 1314
>ATPF_CLOAB (O05098) ATP synthase B chain (EC 3.6.3.14)| Length = 159 Score = 29.6 bits (65), Expect = 3.5 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%) Frame = +3 Query: 159 VEFARYFEDS-------IDNLWSKLKGKDGADLQQPADLESVNLLERSEREGNAASPQSE 317 VE + EDS ++N K + K ++ A E+ N+LER++RE ++E Sbjct: 60 VESEKNLEDSKLQGKTIVENYKVKAE-KVSEEITAEAKTEAQNILERAKRETQREKEKAE 118 Query: 318 DNVASDANFPIHTELAVADCSKGLD 392 D + + ELAV SK L+ Sbjct: 119 DEIKNQV-----VELAVLISSKALE 138
>SRGP1_MOUSE (Q91Z69) SLIT-ROBO Rho GTPase-activating protein 1 (srGAP1)| (Rho-GTPase-activating protein 13) (Fragment) Length = 714 Score = 29.3 bits (64), Expect = 4.6 Identities = 14/50 (28%), Positives = 22/50 (44%) Frame = +3 Query: 231 DLQQPADLESVNLLERSEREGNAASPQSEDNVASDANFPIHTELAVADCS 380 D+ P D S + L R + G P SD + P+H A+++ S Sbjct: 461 DMNSPTDRHSDSYLARQRKRGEPPPPGRRPGRTSDGHCPLHPPHALSNSS 510
>VE2_HPV70 (P50773) Regulatory protein E2| Length = 360 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%) Frame = -2 Query: 300 LHCPPARFSLEDSRSPSQRAAAGLHH--PCLSTSTTGC 193 +HCP + +S D P+ A L H P + +TT C Sbjct: 199 IHCPDSMYSTSDDTVPTTELTAELQHTTPAHTAATTPC 236
>PC11X_PANTR (Q71M42) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/87 (24%), Positives = 33/87 (37%) Frame = -2 Query: 417 EHVSSALLHPTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAA 238 +H SS+ + C+ L+ + H P QT H PP ++ SP Sbjct: 1159 DHSSSSQAQASALCHSPPLSQAS--TQHHSPPVTQTIALCHSPPVTQTIALCHSPPPIQV 1216 Query: 237 AGLHHPCLSTSTTGCR*NPRSTEQTQL 157 + LHH T +P S + + L Sbjct: 1217 SALHHSPPLVQATALHHSPPSAQASAL 1243
>PC11X_PANPA (Q6WYY1) Protocadherin-11 X-linked precursor (Protocadherin-11)| (Protocadherin on the X chromosome) Length = 1347 Score = 29.3 bits (64), Expect = 4.6 Identities = 21/87 (24%), Positives = 33/87 (37%) Frame = -2 Query: 417 EHVSSALLHPTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAA 238 +H SS+ + C+ L+ + H P QT H PP ++ SP Sbjct: 1159 DHSSSSQAQASALCHSPPLSQAS--TQHHSPPVTQTIALCHSPPVTQTIALCHSPPPIQV 1216 Query: 237 AGLHHPCLSTSTTGCR*NPRSTEQTQL 157 + LHH T +P S + + L Sbjct: 1217 SALHHSPPLVQATALHHSPPSAQASAL 1243
>HEM4_MOUSE (P51163) Uroporphyrinogen-III synthase (EC 4.2.1.75) (UROS)| (Uroporphyrinogen-III cosynthetase) (Hydroxymethylbilane hydrolyase [cyclizing]) (UROIIIS) Length = 265 Score = 28.9 bits (63), Expect = 6.0 Identities = 23/104 (22%), Positives = 41/104 (39%) Frame = +3 Query: 90 DGGVSPFLITYICNSLFVVYIPIVEFARYFEDSIDNLWSKLKGKDGADLQQPADLESVNL 269 D G+ P++ L IP++ F S+ S +G G P +E+V L Sbjct: 13 DSGLDPYIQELRLCGLEATLIPVLSFEFMSLPSLSEKLSHPEGFGGLIFTSPRAVEAVKL 72 Query: 270 LERSEREGNAASPQSEDNVASDANFPIHTELAVADCSKGLDAKG 401 + + A +D + + + + + A GLDA+G Sbjct: 73 CLEKDNKTEAWEKSLKDRWNAKSVYVVGSATASLVNKIGLDAEG 116
>INSR_RAT (P15127) Insulin receptor precursor (EC 2.7.10.1) (IR) [Contains:| Insulin receptor alpha subunit; Insulin receptor beta subunit] Length = 1383 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/66 (27%), Positives = 26/66 (39%) Frame = -2 Query: 390 PTLCCNLRQLALCG*GSLHLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAAAGLHHPCLS 211 PT C R L G C++T CPP + +D R + LH+ C + Sbjct: 248 PTKCVACRNFYLDG--------QCVET-----CPPPYYHFQDWRCVNFSFCQDLHYKCRN 294 Query: 210 TSTTGC 193 + GC Sbjct: 295 SRKPGC 300
>Z3H7B_HUMAN (Q9UGR2) Zinc finger CCCH-type domain-containing protein 7B| (Rotavirus 'X'-associated non-structural protein) (RoXaN) Length = 993 Score = 28.5 bits (62), Expect = 7.9 Identities = 23/90 (25%), Positives = 35/90 (38%) Frame = +2 Query: 137 VCCLHSHS*VCSVLRGFYRQPVVEVERQGWCRPAAAR*LGERESSREKRAGGQCSLTSV* 316 +C LH + C G Y + + + E+ + R L R+ RA + Sbjct: 81 LCKLHVNRAACYFTMGLYEKALEDSEKALGLDSESIRAL-----FRKARALNELGRHKEA 135 Query: 317 RQCGFRCKLPYPHRASCRRLQQRVGCKRAL 406 +C RC L PH S +L Q + K L Sbjct: 136 YECSSRCSLALPHDESVTQLGQELAQKLGL 165
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 28.5 bits (62), Expect = 7.9 Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 2/110 (1%) Frame = -2 Query: 336 HLKPHCLQTEVRLHCPPARFSLEDSRSPSQRAAAGLHHPCLSTSTTGCR*NPRSTEQTQL 157 H C+ E C + ++ S R L + CL S C N R ++ + Sbjct: 2175 HQNAACIDLEEGYECKCNQGFMDHSHGRPGRICKQLTNECLRPSLNSCDRNARCIDKEEG 2234 Query: 156 WECKQQTENCICR*SKREKHRHPRQ--TERCSLQQSICPQ*QRCKSALNT 13 +EC+ + S K R R+ E + + + C + RCK +++ Sbjct: 2235 YECECRDGFIDVSPSPTLKGRACRELVNECANSRLNDCDKNARCKDTMDS 2284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,003,422 Number of Sequences: 219361 Number of extensions: 1356450 Number of successful extensions: 4124 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4122 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
