>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  305 bits (154), Expect = 7e-80
 Identities = 376/449 (83%), Gaps = 6/449 (1%)
 Strand = Plus / Plus

                                                                            
Query: 6        tggaggtggtgtttagggctgatttacatcgttgctattgcgggcatatggattgctgca 65
                |||||||||||||||||  |||||||||| |||||| ||||| | |||||||||||||||
Sbjct: 28044733 tggaggtggtgtttaggattgatttacattgttgctgttgcgagtatatggattgctgca 28044792

                                                                            
Query: 66       agctacatcgttcagtctgtcgtggatggcggtgtttctccctttttgatcacctacata 125
                |||||||| ||||||||||| |||||||  ||||||||||| || ||||| |||||||||
Sbjct: 28044793 agctacattgttcagtctgttgtggatgagggtgtttctccattcttgattacctacata 28044852

                                                                            
Query: 126      tgcaattctctgtttgttgtttacattcccatagttgagtttgctcggtacttcgaggat 185
                ||||||||||| |||||| ||||||| || |||||||||  ||| || ||||| ||||||
Sbjct: 28044853 tgcaattctctatttgttatttacatcccaatagttgaggctgcacgatactttgaggat 28044912

                                                                            
Query: 186      tctatcgacaacctgtggtcgaagttgaaaggcaaggatggtgcagacctgcagcagccc 245
                |||||| ||||| | ||| | ||||||||||||||||||| ||| |||||| ||||| | 
Sbjct: 28044913 tctatcaacaacttttggacaaagttgaaaggcaaggatgttgcggacctggagcagtct 28044972

                                                                            
Query: 246      gctgacttggagagcgtgaatcttctagagagaagcgagcgggagggcaatgcagcctca 305
                |||||  |||||||| | ||||||||  |  |||| || |  ||||||||| ||||||||
Sbjct: 28044973 gctgatctggagagcataaatcttctccatggaagtgaacaagagggcaatacagcctca 28045032

                                                                            
Query: 306      cc-tca-----gtctgaagacaatgtggcttcagatgcaaacttccctatccacacagag 359
                ||  ||     | |||||||||   |||||||||| |||  ||||||| ||||  | |||
Sbjct: 28045033 ccaacaaggttgcctgaagacatattggcttcagaagcagtcttccctgtccaggccgag 28045092

                                                                            
Query: 360      ctagctgtcgcagattgcagcaaagggttggatgcaaaagggcgctggacacgtgctcgt 419
                ||   ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28045093 ctgaatgtagcagatggcagcaaagggttggatgcaaaagggcgctggacacgtgctcgt 28045152

                                             
Query: 420      acggncagagtcagcatgctagtctgccc 448
                  ||  |||||||||||| ||||||||||
Sbjct: 28045153 gtggctagagtcagcatggtagtctgccc 28045181

>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0547F09
          Length = 140615

 Score =  305 bits (154), Expect = 7e-80
 Identities = 376/449 (83%), Gaps = 6/449 (1%)
 Strand = Plus / Plus

                                                                         
Query: 6     tggaggtggtgtttagggctgatttacatcgttgctattgcgggcatatggattgctgca 65
             |||||||||||||||||  |||||||||| |||||| ||||| | |||||||||||||||
Sbjct: 89552 tggaggtggtgtttaggattgatttacattgttgctgttgcgagtatatggattgctgca 89611

                                                                         
Query: 66    agctacatcgttcagtctgtcgtggatggcggtgtttctccctttttgatcacctacata 125
             |||||||| ||||||||||| |||||||  ||||||||||| || ||||| |||||||||
Sbjct: 89612 agctacattgttcagtctgttgtggatgagggtgtttctccattcttgattacctacata 89671

                                                                         
Query: 126   tgcaattctctgtttgttgtttacattcccatagttgagtttgctcggtacttcgaggat 185
             ||||||||||| |||||| ||||||| || |||||||||  ||| || ||||| ||||||
Sbjct: 89672 tgcaattctctatttgttatttacatcccaatagttgaggctgcacgatactttgaggat 89731

                                                                         
Query: 186   tctatcgacaacctgtggtcgaagttgaaaggcaaggatggtgcagacctgcagcagccc 245
             |||||| ||||| | ||| | ||||||||||||||||||| ||| |||||| ||||| | 
Sbjct: 89732 tctatcaacaacttttggacaaagttgaaaggcaaggatgttgcggacctggagcagtct 89791

                                                                         
Query: 246   gctgacttggagagcgtgaatcttctagagagaagcgagcgggagggcaatgcagcctca 305
             |||||  |||||||| | ||||||||  |  |||| || |  ||||||||| ||||||||
Sbjct: 89792 gctgatctggagagcataaatcttctccatggaagtgaacaagagggcaatacagcctca 89851

                                                                         
Query: 306   cc-tca-----gtctgaagacaatgtggcttcagatgcaaacttccctatccacacagag 359
             ||  ||     | |||||||||   |||||||||| |||  ||||||| ||||  | |||
Sbjct: 89852 ccaacaaggttgcctgaagacatattggcttcagaagcagtcttccctgtccaggccgag 89911

                                                                         
Query: 360   ctagctgtcgcagattgcagcaaagggttggatgcaaaagggcgctggacacgtgctcgt 419
             ||   ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89912 ctgaatgtagcagatggcagcaaagggttggatgcaaaagggcgctggacacgtgctcgt 89971

                                          
Query: 420   acggncagagtcagcatgctagtctgccc 448
               ||  |||||||||||| ||||||||||
Sbjct: 89972 gtggctagagtcagcatggtagtctgccc 90000

>dbj|AK104993.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G09, full
           insert sequence
          Length = 1973

 Score =  305 bits (154), Expect = 7e-80
 Identities = 376/449 (83%), Gaps = 6/449 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   tggaggtggtgtttagggctgatttacatcgttgctattgcgggcatatggattgctgca 65
           |||||||||||||||||  |||||||||| |||||| ||||| | |||||||||||||||
Sbjct: 397 tggaggtggtgtttaggattgatttacattgttgctgttgcgagtatatggattgctgca 456

                                                                       
Query: 66  agctacatcgttcagtctgtcgtggatggcggtgtttctccctttttgatcacctacata 125
           |||||||| ||||||||||| |||||||  ||||||||||| || ||||| |||||||||
Sbjct: 457 agctacattgttcagtctgttgtggatgagggtgtttctccattcttgattacctacata 516

                                                                       
Query: 126 tgcaattctctgtttgttgtttacattcccatagttgagtttgctcggtacttcgaggat 185
           ||||||||||| |||||| ||||||| || |||||||||  ||| || ||||| ||||||
Sbjct: 517 tgcaattctctatttgttatttacatcccaatagttgaggctgcacgatactttgaggat 576

                                                                       
Query: 186 tctatcgacaacctgtggtcgaagttgaaaggcaaggatggtgcagacctgcagcagccc 245
           |||||| ||||| | ||| | ||||||||||||||||||| ||| |||||| ||||| | 
Sbjct: 577 tctatcaacaacttttggacaaagttgaaaggcaaggatgttgcggacctggagcagtct 636

                                                                       
Query: 246 gctgacttggagagcgtgaatcttctagagagaagcgagcgggagggcaatgcagcctca 305
           |||||  |||||||| | ||||||||  |  |||| || |  ||||||||| ||||||||
Sbjct: 637 gctgatctggagagcataaatcttctccatggaagtgaacaagagggcaatacagcctca 696

                                                                       
Query: 306 cc-tca-----gtctgaagacaatgtggcttcagatgcaaacttccctatccacacagag 359
           ||  ||     | |||||||||   |||||||||| |||  ||||||| ||||  | |||
Sbjct: 697 ccaacaaggttgcctgaagacatattggcttcagaagcagtcttccctgtccaggccgag 756

                                                                       
Query: 360 ctagctgtcgcagattgcagcaaagggttggatgcaaaagggcgctggacacgtgctcgt 419
           ||   ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ctgaatgtagcagatggcagcaaagggttggatgcaaaagggcgctggacacgtgctcgt 816

                                        
Query: 420 acggncagagtcagcatgctagtctgccc 448
             ||  |||||||||||| ||||||||||
Sbjct: 817 gtggctagagtcagcatggtagtctgccc 845

>ref|NM_114736.1| Arabidopsis thaliana DNA binding AT3G48770 mRNA, complete cds
          Length = 5700

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 143  tgtttacattcccatagttg 162
            ||||||||||||||||||||
Sbjct: 2611 tgtttacattcccatagttg 2592

>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence
          Length = 255036

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 282   gagcgggagggcaatgcagc 301
             ||||||||||||||||||||
Sbjct: 69942 gagcgggagggcaatgcagc 69961

>gb|AC112520.5| Mus musculus BAC clone RP23-2N4 from 12, complete sequence
          Length = 233153

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 296    tgcagcctcacctcagtctg 315
              ||||||||||||||||||||
Sbjct: 221841 tgcagcctcacctcagtctg 221860

>gb|AC016522.10| Mus musculus chromosome 7, clone RP23-352D23, complete sequence
          Length = 191935

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 322   atgtggcttcagatgcaaacttcc 345
             ||||||||||||||||||| ||||
Sbjct: 57282 atgtggcttcagatgcaaatttcc 57259

>emb|AL445531.10| Human DNA sequence from clone RP11-546O6 on chromosome 9 Contains the
             3' end of the NCBP1 gene for nuclear cap binding protein
             subunit 1, 80kDa (NCBP, CBP80), the XPA gene for xeroderma
             pigmentosum, complementation group A (XP1, XPAC), a
             keratin 18 (KRT18) pseudogene and two CpG islands,
             complete sequence
          Length = 111345

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   cagcctcacctcagtctgaa 317
             ||||||||||||||||||||
Sbjct: 96131 cagcctcacctcagtctgaa 96150

>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18
          Length = 82912

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tgtttacattcccatagttg 162
             ||||||||||||||||||||
Sbjct: 30789 tgtttacattcccatagttg 30808

>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence
          Length = 180084

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gagcgggagggcaatgcagc 301
              ||||||||||||||||||||
Sbjct: 125787 gagcgggagggcaatgcagc 125806

>dbj|AK089582.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830002N10 product:unclassifiable, full
           insert sequence
          Length = 2341

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 cctatccacacagagctagc 364
           ||||||||||||||||||||
Sbjct: 778 cctatccacacagagctagc 759

>gb|AC132623.4| Mus musculus BAC clone RP23-123N23 from chromosome 12, complete sequence
          Length = 195885

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    tgcagcctcacctcagtctg 315
              ||||||||||||||||||||
Sbjct: 180840 tgcagcctcacctcagtctg 180821

>gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete sequence
          Length = 184473

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    caattctctgtttgttgttt 147
              ||||||||||||||||||||
Sbjct: 176144 caattctctgtttgttgttt 176163

>emb|AL806533.8| Mouse DNA sequence from clone RP23-468I23 on chromosome 4, complete
             sequence
          Length = 201226

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 345   cctatccacacagagctagc 364
             ||||||||||||||||||||
Sbjct: 68150 cctatccacacagagctagc 68169

>gb|AC018413.10| Homo sapiens chromosome 18, clone RP11-17M16, complete sequence
          Length = 112797

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   attctctgtttgttgtttacattc 153
             |||||||||||||||| |||||||
Sbjct: 92917 attctctgtttgttgtctacattc 92894


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,353,557
Number of Sequences: 3902068
Number of extensions: 3353557
Number of successful extensions: 60338
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60296
Number of HSP's gapped (non-prelim): 42
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)