| Clone Name | basd21a13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT018886.1| Zea mays clone EL01T0205E01.d mRNA sequence Length = 1617 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 cgacgacccggactccgccgt 49 ||||||||||||||||||||| Sbjct: 951 cgacgacccggactccgccgt 971
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 cagcactgggaggcgcaccgg 102 ||||||||||||||||||||| Sbjct: 3519339 cagcactgggaggcgcaccgg 3519319
>ref|NM_189031.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1152 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ccgccgtcgacgccgtccac 62 |||||||||||||||||||| Sbjct: 605 ccgccgtcgacgccgtccac 586
>gb|BT017884.1| Zea mays clone EL01N0514G01.c mRNA sequence Length = 627 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 caagctgatggtgatcgact 130 |||||||||||||||||||| Sbjct: 117 caagctgatggtgatcgact 136
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete sequence Length = 167239 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 51940 tccccgacgacgacccggactccg 51963
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 21033338 tccccgacgacgacccggactccg 21033315
>ref|XM_749062.1| Aspergillus fumigatus Af293 polyketide synthase type I (Afu3g14700) partial mRNA Length = 7545 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gccgtcgacgccgtccactc 64 |||||||||||||||||||| Sbjct: 6677 gccgtcgacgccgtccactc 6658
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 tccgccgtcgacgccgtcca 61 |||||||||||||||||||| Sbjct: 175775 tccgccgtcgacgccgtcca 175794
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 11094 tccccgacgacgacccggactccg 11071
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ccgccgtcgacgccgtccac 62 |||||||||||||||||||| Sbjct: 25693711 ccgccgtcgacgccgtccac 25693730 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 cgacgacccggactccgcc 47 ||||||||||||||||||| Sbjct: 19572143 cgacgacccggactccgcc 19572161
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 21026367 tccccgacgacgacccggactccg 21026344
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 19604272 tccccgacgacgacccggactccg 19604295 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 ggcgacgacccggactccg 45 ||||||||||||||||||| Sbjct: 26564922 ggcgacgacccggactccg 26564904
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 70558 tccccgacgacgacccggactccg 70581
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0700D12 Length = 145177 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 ccgccgtcgacgccgtccac 62 |||||||||||||||||||| Sbjct: 71459 ccgccgtcgacgccgtccac 71478
>dbj|AK072995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147F22, full insert sequence Length = 1633 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 474 tccccgacgacgacccggactccg 497
>dbj|AK061586.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C01, full insert sequence Length = 1555 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 tccccggcgacgacccggactccg 45 |||||| ||||||||||||||||| Sbjct: 396 tccccgacgacgacccggactccg 419
>gb|AY104013.1| Zea mays PCO085678 mRNA sequence Length = 736 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 caagctgatggtgatcgact 130 |||||||||||||||||||| Sbjct: 181 caagctgatggtgatcgact 200
>ref|XM_482349.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1113 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 cgacgacccggactccgcc 47 ||||||||||||||||||| Sbjct: 375 cgacgacccggactccgcc 393
>ref|XM_467127.1| Oryza sativa (japonica cultivar-group), mRNA Length = 372 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 ggcgacgacccggactccg 45 ||||||||||||||||||| Sbjct: 235 ggcgacgacccggactccg 253
>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens quinquefasciatus-3940135D9, complete sequence Length = 93659 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 cgccgtcgacgccgtccac 62 ||||||||||||||||||| Sbjct: 1625 cgccgtcgacgccgtccac 1643
>ref|XM_450955.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1074 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gccgctccccggcgacgac 35 ||||||||||||||||||| Sbjct: 303 gccgctccccggcgacgac 321
>gb|AC105259.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1115_B04, complete sequence Length = 95383 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 ccgccgtcgacgccgtcca 61 ||||||||||||||||||| Sbjct: 49983 ccgccgtcgacgccgtcca 49965
>ref|XM_362912.1| Magnaporthe grisea 70-15 hypothetical protein (MG08525.4) partial cds Length = 1440 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 cgccgtcgacgccgtccac 62 ||||||||||||||||||| Sbjct: 1097 cgccgtcgacgccgtccac 1115
>gb|AC110212.12| Mus musculus chromosome 19, clone RP23-183H23, complete sequence Length = 212687 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 ctgggtaccagcactggga 92 ||||||||||||||||||| Sbjct: 128531 ctgggtaccagcactggga 128513
>gb|AC006944.13| Mus musculus strain 129S6/SvEvTac clone rp22-225p5 map 1q21-23, complete sequence Length = 120888 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 73 cctgggtaccagcactgggaggc 95 ||||||||||||||| ||||||| Sbjct: 93742 cctgggtaccagcacagggaggc 93720
>gb|BT009023.1| Triticum aestivum clone wdk3c.pk012.h14:fis, full insert mRNA sequence Length = 817 Score = 38.2 bits (19), Expect = 6.1 Identities = 31/35 (88%) Strand = Plus / Minus Query: 23 ccccggcgacgacccggactccgccgtcgacgccg 57 ||||||||||||||| ||| |||||| ||| |||| Sbjct: 177 ccccggcgacgaccccgaccccgccgccgaggccg 143
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 22 tccccggcgacgacccggactcc 44 ||||||||||| ||||||||||| Sbjct: 2485625 tccccggcgaccacccggactcc 2485647
>gb|AC008100.71| Mus musculus strain 129X1/SvJ ES cell line RW4 chromosome 1q21-23 clone mgs1-423c02, complete sequence Length = 220020 Score = 38.2 bits (19), Expect = 6.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 73 cctgggtaccagcactgggaggc 95 ||||||||||||||| ||||||| Sbjct: 208617 cctgggtaccagcacagggaggc 208595
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 gccgctccccggcgacgac 35 ||||||||||||||||||| Sbjct: 17779882 gccgctccccggcgacgac 17779864
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 cgacgacccggactccgcc 47 ||||||||||||||||||| Sbjct: 11107600 cgacgacccggactccgcc 11107618
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 ccgccgtcgacgccgtcca 61 ||||||||||||||||||| Sbjct: 8471713 ccgccgtcgacgccgtcca 8471695
>gb|AC079905.28| Homo sapiens 12 BAC RP11-813P10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189456 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 gcctgggtaccagcactgg 90 ||||||||||||||||||| Sbjct: 80324 gcctgggtaccagcactgg 80342
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 cgccgtcgacgccgtccac 62 ||||||||||||||||||| Sbjct: 464012 cgccgtcgacgccgtccac 463994
>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1217_C01 Length = 100180 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 cgacgacccggactccgcc 47 ||||||||||||||||||| Sbjct: 37506 cgacgacccggactccgcc 37524
>dbj|AP005006.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519E06 Length = 170634 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 ggcgacgacccggactccg 45 ||||||||||||||||||| Sbjct: 107303 ggcgacgacccggactccg 107285
>dbj|AP005574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1595_D08 Length = 116351 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 gccgctccccggcgacgac 35 ||||||||||||||||||| Sbjct: 20526 gccgctccccggcgacgac 20508
>dbj|AP005399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0676H02 Length = 144252 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 gccgctccccggcgacgac 35 ||||||||||||||||||| Sbjct: 88516 gccgctccccggcgacgac 88498
>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0042B03 Length = 167669 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 29 cgacgacccggactccgcc 47 ||||||||||||||||||| Sbjct: 47703 cgacgacccggactccgcc 47721
>dbj|AK064102.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-A07, full insert sequence Length = 1722 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 17 gccgctccccggcgacgac 35 ||||||||||||||||||| Sbjct: 675 gccgctccccggcgacgac 693
>gb|U82823.1|SEU82823 Saccharopolyspora erythraea putative carboxypeptidase, putative lysozyme, putative Streptomyces subtilisin inhibitor-like protein, putative peptidyl-prolyl cis-trans isomerase, putative transposase, putative esterase mutated and putative erythromycin C-12 hydroxylase genes, complete cds Length = 8407 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 cgccgtcgacgccgtccac 62 ||||||||||||||||||| Sbjct: 2459 cgccgtcgacgccgtccac 2441
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 ggcgacgacccggactccg 45 ||||||||||||||||||| Sbjct: 310640 ggcgacgacccggactccg 310658
>emb|AJ223075.1|HSTRIP Homo sapiens mRNA for TRIP protein Length = 3656 Score = 38.2 bits (19), Expect = 6.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 acgaggccgctccccggcg 30 ||||||||||||||||||| Sbjct: 4 acgaggccgctccccggcg 22 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 580,346 Number of Sequences: 3902068 Number of extensions: 580346 Number of successful extensions: 50362 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49725 Number of HSP's gapped (non-prelim): 637 length of query: 130 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 109 effective length of database: 17,151,101,840 effective search space: 1869470100560 effective search space used: 1869470100560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)