ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd21a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF527606.1| Hordeum vulgare iron/ascorbate-dependent oxidoreductase (Hcp1) mRNA, complete cds Length = 1360 Score = 494 bits (249), Expect = e-136 Identities = 366/405 (90%) Strand = Plus / Plus Query: 69 aggagccgccgcgacagtacgtggtgcaggagcaggacggtcacggcgacctgctggccg 128 ||||||||||| | | |||| | ||||| ||||| ||| ||||||||||||||||||||| Sbjct: 80 aggagccgccgagccggtacttagtgcacgagcaagaccgtcacggcgacctgctggccg 139 Query: 129 ccgacgagtttccggagcccatccccctcatcgatcttacccggctcacggacgtcgacg 188 || |||| | |||||||||||||| ||||| || |||| |||||||| ||||| ||||| Sbjct: 140 cccacgaaatgccggagcccatccctctcattgaccttagccggctcatggacgccgacg 199 Query: 189 aggccgaaaggctccgggcggcgctgcagacatggggcttcttcctggccaccaaccatg 248 ||||||| | |||||||||||| || ||||| |||||||||||||||||||||||||||| Sbjct: 200 aggccgacaagctccgggcggctctacagacctggggcttcttcctggccaccaaccatg 259 Query: 249 ggatcgaggactctctcatggatgccatcacgagcgtgtcgagggagttcttccggcagc 308 |||||||||||||||||||||| || || | ||||| |||||||||||||||||| || | Sbjct: 260 ggatcgaggactctctcatggaagcaatgatgagcgcgtcgagggagttcttccgtcaac 319 Query: 309 cggcggaagagaagcagaaatgcagcaacctggtggacggcaacggcgagcactaccagg 368 || | || ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 320 cgtctgaggagaagcagaaatgcagcaacctggtggacggcaacggcaagcactaccagg 379 Query: 369 tggaagggtatggaagtgacaaggtggtgtccgaggatcaggtcctcaactggaacgacc 428 ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct: 380 tggaagggtatggaagtgacaaggtggagtccgaggatcaggtcctcaattggaacgacc 439 Query: 429 ggttgcatctgagagtggagccggaagacgagaggaatttcgcta 473 |||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct: 440 ggttgcatctgagagttgagcccgaagatgagaggaatttcgcta 484
>ref|NM_185692.1| Oryza sativa (japonica cultivar-group), Ozsa8043 predicted mRNA Length = 1164 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 111 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 170 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctggccac 240 || ||||||||| | | |||| ||||||| ||||||| ||||||||||||||| || Sbjct: 171 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgcttac 230 Query: 241 caaccatgg 249 ||||||||| Sbjct: 231 caaccatgg 239 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 34 gtgcaagagctggcggcggccggcgtcgaggagcc 68 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 335 acggcaagaacttccaggtggaagggtatggaactgac 372
>ref|XM_476309.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1053 Score = 58.0 bits (29), Expect = 3e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 111 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 170 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctggccac 240 || ||||||||| | | |||| ||||||| ||||||| ||||||||||||||| || Sbjct: 171 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgcttac 230 Query: 241 caaccatgg 249 ||||||||| Sbjct: 231 caaccatgg 239 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 34 gtgcaagagctggcggcggccggcgtcgaggagcc 68 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 335 acggcaagaacttccaggtggaagggtatggaactgac 372
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 3904597 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 3904656 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 236 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 3904657 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 3904712 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 3892774 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 3892833 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 236 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 3892834 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 3892889 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 3854718 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 3854777 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 236 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 3854778 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 3854833 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 3904520 gtgcaagagctggcggcggccggcgtcgaggagcc 3904554 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 3892697 gtgcaagagctggcggcggccggcgtcgaggagcc 3892731 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 3854641 gtgcaagagctggcggcggccggcgtcgaggagcc 3854675 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 3904914 acggcaagaacttccaggtggaagggtatggaactgac 3904951 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 3893023 acggcaagaacttccaggtggaagggtatggaactgac 3893060 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 3855035 acggcaagaacttccaggtggaagggtatggaactgac 3855072
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 10473 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 10532 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 236 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 10533 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 10588 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 10396 gtgcaagagctggcggcggccggcgtcgaggagcc 10430 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 10790 acggcaagaacttccaggtggaagggtatggaactgac 10827
>dbj|AP002069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0015E04 Length = 152046 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 150728 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 150787 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 236 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 150788 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 150843 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 121 gctggccgccgacgagtttccggagcccatccccctcatcgatcttacccggctcacgga 180 ||||| ||||| |||| | ||||||||||||||| || | ||||| | |||||| | | Sbjct: 112672 gctggtcgccgccgagctgccggagcccatccccgtcgttgatctcagccggctagccgg 112731 Query: 181 cgtcgacgaggccgaaaggctccgggcggcgctgcagacatggggcttcttcctgg 236 || ||||||||| | | |||| ||||||| ||||||| |||||||||||||||| Sbjct: 112732 cgccgacgaggctgccaagctcagggcggctctgcagaattggggcttcttcctgg 112787 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 150651 gtgcaagagctggcggcggccggcgtcgaggagcc 150685 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagcc 75 ||||| |||||||| |||||||||||||||||||| Sbjct: 112595 gtgcaagagctggcggcggccggcgtcgaggagcc 112629 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 151045 acggcaagaacttccaggtggaagggtatggaactgac 151082 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 351 acggcgagcactaccaggtggaagggtatggaagtgac 388 ||||| || ||| |||||||||||||||||||| |||| Sbjct: 112989 acggcaagaacttccaggtggaagggtatggaactgac 113026
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagccgccg 79 ||||| |||||||| || ||||||||||||||||||||| Sbjct: 10387386 gtgcaagagctggcggcagccggcgtcgaggagccgccg 10387424 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 442 agtggagccggaagacgagaggaatttcgc 471 ||||||||| ||||||||||||||| |||| Sbjct: 12788329 agtggagcctgaagacgagaggaatctcgc 12788358
>dbj|AP005398.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0669G10 Length = 133372 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagccgccg 79 ||||| |||||||| || ||||||||||||||||||||| Sbjct: 29808 gtgcaagagctggcggcagccggcgtcgaggagccgccg 29846
>dbj|AK065581.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034J09, full insert sequence Length = 1729 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 41 gtgcaggagctggctgcggccggcgtcgaggagccgccg 79 ||||| |||||||| || ||||||||||||||||||||| Sbjct: 380 gtgcaagagctggcggcagccggcgtcgaggagccgccg 418
>ref|NM_197542.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0040D23.1), mRNA Length = 1494 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 gagttcttccggcagccggcggaagagaag 322 ||||||||||||| ||||||||| |||||| Sbjct: 271 gagttcttccggctgccggcggaggagaag 300
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 gccggcgtcgaggagccgccgc 80 |||||||||||||||||||||| Sbjct: 953188 gccggcgtcgaggagccgccgc 953167
>gb|AC092697.6| Oryza sativa chromosome 10 BAC OSJNBb0060I05 genomic sequence, complete sequence Length = 105841 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 gagttcttccggcagccggcggaagagaag 322 ||||||||||||| ||||||||| |||||| Sbjct: 83216 gagttcttccggctgccggcggaggagaag 83245
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 gagttcttccggcagccggcggaagagaag 322 ||||||||||||| ||||||||| |||||| Sbjct: 7862 gagttcttccggctgccggcggaggagaag 7891
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 169 ccggctcacggacgtcgacgag 190 |||||||||||||||||||||| Sbjct: 4560844 ccggctcacggacgtcgacgag 4560865
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 gagttcttccggcagccggcggaagagaag 322 ||||||||||||| ||||||||| |||||| Sbjct: 20367714 gagttcttccggctgccggcggaggagaag 20367743
>dbj|AP005651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0086N11 Length = 146185 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 442 agtggagccggaagacgagaggaatttcgc 471 ||||||||| ||||||||||||||| |||| Sbjct: 136606 agtggagcctgaagacgagaggaatctcgc 136635
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 442 agtggagccggaagacgagaggaatttcgc 471 ||||||||| ||||||||||||||| |||| Sbjct: 7811 agtggagcctgaagacgagaggaatctcgc 7840
>dbj|AK111474.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F04, full insert sequence Length = 1257 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 442 agtggagccggaagacgagaggaatttcgc 471 ||||||||| ||||||||||||||| |||| Sbjct: 474 agtggagcctgaagacgagaggaatctcgc 503
>dbj|AK061357.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-B08, full insert sequence Length = 1004 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 gagttcttccggcagccggcggaagagaag 322 ||||||||||||| ||||||||| |||||| Sbjct: 386 gagttcttccggctgccggcggaggagaag 415
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 293 gagttcttccggcagccggcggaagagaag 322 ||||||||||||| ||||||||| |||||| Sbjct: 20378986 gagttcttccggctgccggcggaggagaag 20379015
>ref|XM_541613.2| PREDICTED: Canis familiaris similar to Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta chain 3) (Beta-IV spectrin) (LOC484499), mRNA Length = 8696 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 45 aggagctggctgcggccggcg 65 ||||||||||||||||||||| Sbjct: 2266 aggagctggctgcggccggcg 2286
>gb|AC129312.6| Mus musculus BAC clone RP24-405K6 from chromosome 1, complete sequence Length = 197135 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 399 ccgaggatcaggtcctcaact 419 ||||||||||||||||||||| Sbjct: 107993 ccgaggatcaggtcctcaact 107973
>ref|XM_476744.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1298 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggagttcttccggcagccggcgga 315 |||||||||||||| ||||||||| Sbjct: 321 ggagttcttccggctgccggcgga 344
>ref|XM_595616.2| PREDICTED: Bos taurus similar to Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin heavy chain, type A) (Nonmuscle myosin heavy chain-A) (NMMHC-A) (LOC517447), mRNA Length = 705 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 acgtggtgcaggagcaggac 106 |||||||||||||||||||| Sbjct: 446 acgtggtgcaggagcaggac 465
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 aggccgaaaggctccgggcggcgc 212 ||||||||| |||||||||||||| Sbjct: 2006697 aggccgaaacgctccgggcggcgc 2006720
>emb|BX640452.1| Bordetella bronchiseptica strain RB50, complete genome; segment 16/16 Length = 123385 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cggcgacctgctggccgccg 131 |||||||||||||||||||| Sbjct: 7589 cggcgacctgctggccgccg 7608
>emb|BX640436.1| Bordetella parapertussis strain 12822, complete genome; segment 14/14 Length = 255260 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cggcgacctgctggccgccg 131 |||||||||||||||||||| Sbjct: 143417 cggcgacctgctggccgccg 143436
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cggcgacctgctggccgccg 131 |||||||||||||||||||| Sbjct: 169204 cggcgacctgctggccgccg 169223
>gb|AF512431.1| Saccharothrix mutabilis subsp. capreolus nonribosomal peptide synthetase gene cluster, partial sequence Length = 28890 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ggccggcgtcgaggagccgccgcg 81 ||||||||||||||||| |||||| Sbjct: 17600 ggccggcgtcgaggagctgccgcg 17577
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gatggtgcggccgacgacgg 41 |||||||||||||||||||| Sbjct: 20112011 gatggtgcggccgacgacgg 20111992
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggagttcttccggcagccggcgga 315 |||||||||||||| ||||||||| Sbjct: 3732189 ggagttcttccggctgccggcgga 3732212
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 acctggtggacggcaacggcgagc 359 |||||||||||||| ||||||||| Sbjct: 4857995 acctggtggacggccacggcgagc 4857972
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggagttcttccggcagccggcgga 315 |||||||||||||| ||||||||| Sbjct: 76540 ggagttcttccggctgccggcgga 76563
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 gatggtgcggccgacgacgg 41 |||||||||||||||||||| Sbjct: 58557 gatggtgcggccgacgacgg 58538
>dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full insert sequence Length = 1301 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggagttcttccggcagccggcgga 315 |||||||||||||| ||||||||| Sbjct: 325 ggagttcttccggctgccggcgga 348
>dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F03, full insert sequence Length = 1298 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggagttcttccggcagccggcgga 315 |||||||||||||| ||||||||| Sbjct: 321 ggagttcttccggctgccggcgga 344
>gb|AY104706.1| Zea mays PCO076122 mRNA sequence Length = 1382 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 292 ggagttcttccggcagccggcgga 315 |||||||||||||| ||||||||| Sbjct: 359 ggagttcttccggctgccggcgga 382
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 acggtcacggcgacctgctggccg 128 |||| ||||||||||||||||||| Sbjct: 1586764 acgggcacggcgacctgctggccg 1586787
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 acggcgacctgctggccgcc 130 |||||||||||||||||||| Sbjct: 662701 acggcgacctgctggccgcc 662720 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,121,781 Number of Sequences: 3902068 Number of extensions: 3121781 Number of successful extensions: 77751 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76607 Number of HSP's gapped (non-prelim): 1136 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
