ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd20g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMW... 408 e-111
2ref|XM_471067.1| Oryza sativa (japonica cultivar-group), predic... 60 4e-06
3dbj|AK061898.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
4emb|AJ698084.1| Oryza sativa (japonica cultivar-group) mRNA for ... 60 4e-06
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
6dbj|AK065035.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
7emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4,... 60 4e-06
8gb|BT016568.1| Zea mays clone Contig401 mRNA sequence 54 3e-04
9gb|DQ427307.1| Sorghum bicolor voucher PI585454 locus CSU535 gen... 48 0.017
10gb|DQ427306.1| Sorghum bicolor voucher PI267539 locus CSU535 gen... 48 0.017
11gb|DQ427305.1| Sorghum bicolor voucher PI267408 locus CSU535 gen... 48 0.017
12gb|DQ427304.1| Sorghum bicolor voucher PI221607 locus CSU535 gen... 48 0.017
13gb|DQ427303.1| Sorghum bicolor voucher PI152702 locus CSU535 gen... 48 0.017
14gb|DQ427302.1| Sorghum bicolor voucher NSL92371 locus CSU535 gen... 48 0.017
15gb|DQ427301.1| Sorghum bicolor voucher NSL87902b locus CSU535 ge... 48 0.017
16gb|DQ427300.1| Sorghum bicolor voucher NSL87902a locus CSU535 ge... 48 0.017
17gb|DQ427299.1| Sorghum bicolor voucher NSL87666 locus CSU535 gen... 48 0.017
18gb|DQ427298.1| Sorghum bicolor voucher NSL77217 locus CSU535 gen... 48 0.017
19gb|DQ427297.1| Sorghum bicolor voucher NSL77034 locus CSU535 gen... 48 0.017
20gb|DQ427296.1| Sorghum bicolor voucher NSL56174 locus CSU535 gen... 48 0.017
21gb|DQ427295.1| Sorghum bicolor voucher NSL56003 locus CSU535 gen... 48 0.017
22gb|DQ427294.1| Sorghum bicolor voucher NSL55243 locus CSU535 gen... 48 0.017
23gb|DQ427293.1| Sorghum bicolor voucher NSL51365 locus CSU535 gen... 48 0.017
24gb|DQ427292.1| Sorghum bicolor voucher NSL51030 locus CSU535 gen... 48 0.017
25gb|DQ427291.1| Sorghum bicolor voucher NSL50875 locus CSU535 gen... 48 0.017
26gb|DQ427290.1| Sorghum bicolor voucher BTx623 locus CSU535 genom... 48 0.017
27gb|BT018884.1| Zea mays clone EL01T0205B04.d mRNA sequence 46 0.066
28dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 44 0.26
29gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 44 0.26
30gb|DQ427308.1| Sorghum propinquum locus CSU535 genomic sequence 40 4.0

>emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMWG0682
          Length = 577

 Score =  408 bits (206), Expect = e-111
 Identities = 214/218 (98%)
 Strand = Plus / Plus

                                                                       
Query: 91  gcagcgatggcacacgccaacacaaagtttgtcgccggcgagctcactgcttcggaaaac 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcagcgatggcacacgccaacacaaagtttgtcgccggcgagctcactgcttcggaaaac 60

                                                                       
Query: 151 aacgacgaggccggttcgaccagtaacaacgcccaagccgagaagncaaagcactggacg 210
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61  aacgacgaggccggttcgaccagtaacaacgcccaagccgagaagccaaagcactggacg 120

                                                                       
Query: 211 gncaacctacccaaagtcttcgtgataggcagcgtggtcgccctggcttgcaccttcgac 270
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggcaacctacccaaagtcttcgtgataggcagcgtggtcgccctggcttgcaccttcgac 180

                                                 
Query: 271 aaggggctactgaccaaggctctngtgttcngaacggc 308
           ||||||||||||||||||||||| |||||| |||||||
Sbjct: 181 aaggggctactgaccaaggctctcgtgttcggaacggc 218



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>ref|XM_471067.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1203

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccagaccgcc 60
           ||||| ||||||||||| |||||| |||||||||||||| |  | |||||||| | ||| 
Sbjct: 868 caggggatgtggggctgcgtcaaaaggattgagcctggcttgagggcataccaaatcgca 927

                                                                
Query: 61  agggctgccggcgaacccatctcgaaattcgcagcgatggcacacgccaacac 113
           ||| |||| ||||| ||| | || |||| ||| || |||||||| | ||||||
Sbjct: 928 aggactgctggcgagcccctttcaaaatgcgctgccatggcacatgtcaacac 980



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 45/54 (83%)
 Strand = Plus / Plus

                                                                  
Query: 175  aacaacgcccaagccgagaagncaaagcactggacggncaacctacccaaagtc 228
            ||||||||  |||| |||||  ||||||||||||| | |||  |||||||||||
Sbjct: 1039 aacaacgctgaagctgagaaaccaaagcactggacaggcaatatacccaaagtc 1092



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>dbj|AK061898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H01, full
            insert sequence
          Length = 1620

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccagaccgcc 60
            ||||| ||||||||||| |||||| |||||||||||||| |  | |||||||| | ||| 
Sbjct: 910  caggggatgtggggctgcgtcaaaaggattgagcctggcttgagggcataccaaatcgca 969

                                                                 
Query: 61   agggctgccggcgaacccatctcgaaattcgcagcgatggcacacgccaacac 113
            ||| |||| ||||| ||| | || |||| ||| || |||||||| | ||||||
Sbjct: 970  aggactgctggcgagcccctttcaaaatgcgctgccatggcacatgtcaacac 1022



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 45/54 (83%)
 Strand = Plus / Plus

                                                                  
Query: 175  aacaacgcccaagccgagaagncaaagcactggacggncaacctacccaaagtc 228
            ||||||||  |||| |||||  ||||||||||||| | |||  |||||||||||
Sbjct: 1081 aacaacgctgaagctgagaaaccaaagcactggacaggcaatatacccaaagtc 1134



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>emb|AJ698084.1| Oryza sativa (japonica cultivar-group) mRNA for membrane related
            protein (mrp1 gene)
          Length = 1366

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccagaccgcc 60
            ||||| ||||||||||| |||||| |||||||||||||| |  | |||||||| | ||| 
Sbjct: 913  caggggatgtggggctgcgtcaaaaggattgagcctggcttgagggcataccaaatcgca 972

                                                                 
Query: 61   agggctgccggcgaacccatctcgaaattcgcagcgatggcacacgccaacac 113
            ||| |||| ||||| ||| | || |||| ||| || |||||||| | ||||||
Sbjct: 973  aggactgctggcgagcccctttcaaaatgcgctgccatggcacatgtcaacac 1025



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 45/54 (83%)
 Strand = Plus / Plus

                                                                  
Query: 175  aacaacgcccaagccgagaagncaaagcactggacggncaacctacccaaagtc 228
            ||||||||  |||| |||||  ||||||||||||| | |||  |||||||||||
Sbjct: 1084 aacaacgctgaagctgagaaaccaaagcactggacaggcaatatacccaaagtc 1137



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                           
Query: 1       cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccagaccgcc 60
               ||||| ||||||||||| |||||| |||||||||||||| |  | |||||||| | ||| 
Sbjct: 1136689 caggggatgtggggctgcgtcaaaaggattgagcctggcttgagggcataccaaatcgca 1136630

                                                                    
Query: 61      agggctgccggcgaacccatctcgaaattcgcagcgatggcacacgccaacac 113
               ||| |||| ||||| ||| | || |||| ||| || |||||||| | ||||||
Sbjct: 1136629 aggactgctggcgagcccctttcaaaatgcgctgccatggcacatgtcaacac 1136577



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 45/54 (83%)
 Strand = Plus / Minus

                                                                     
Query: 175     aacaacgcccaagccgagaagncaaagcactggacggncaacctacccaaagtc 228
               ||||||||  |||| |||||  ||||||||||||| | |||  |||||||||||
Sbjct: 1136518 aacaacgctgaagctgagaaaccaaagcactggacaggcaatatacccaaagtc 1136465



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>dbj|AK065035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H07, full
            insert sequence
          Length = 1869

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1    cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccagaccgcc 60
            ||||| ||||||||||| |||||| |||||||||||||| |  | |||||||| | ||| 
Sbjct: 1155 caggggatgtggggctgcgtcaaaaggattgagcctggcttgagggcataccaaatcgca 1214

                                                                 
Query: 61   agggctgccggcgaacccatctcgaaattcgcagcgatggcacacgccaacac 113
            ||| |||| ||||| ||| | || |||| ||| || |||||||| | ||||||
Sbjct: 1215 aggactgctggcgagcccctttcaaaatgcgctgccatggcacatgtcaacac 1267



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 45/54 (83%)
 Strand = Plus / Plus

                                                                  
Query: 175  aacaacgcccaagccgagaagncaaagcactggacggncaacctacccaaagtc 228
            ||||||||  |||| |||||  ||||||||||||| | |||  |||||||||||
Sbjct: 1326 aacaacgctgaagctgagaaaccaaagcactggacaggcaatatacccaaagtc 1379



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>emb|AL606450.3|OSJN00001 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020P07,
             complete sequence
          Length = 167895

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                         
Query: 1     cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccagaccgcc 60
             ||||| ||||||||||| |||||| |||||||||||||| |  | |||||||| | ||| 
Sbjct: 79071 caggggatgtggggctgcgtcaaaaggattgagcctggcttgagggcataccaaatcgca 79012

                                                                  
Query: 61    agggctgccggcgaacccatctcgaaattcgcagcgatggcacacgccaacac 113
             ||| |||| ||||| ||| | || |||| ||| || |||||||| | ||||||
Sbjct: 79011 aggactgctggcgagcccctttcaaaatgcgctgccatggcacatgtcaacac 78959



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 45/54 (83%)
 Strand = Plus / Minus

                                                                   
Query: 175   aacaacgcccaagccgagaagncaaagcactggacggncaacctacccaaagtc 228
             ||||||||  |||| |||||  ||||||||||||| | |||  |||||||||||
Sbjct: 78900 aacaacgctgaagctgagaaaccaaagcactggacaggcaatatacccaaagtc 78847



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>gb|BT016568.1| Zea mays clone Contig401 mRNA sequence
          Length = 845

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                       
Query: 190 gagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggtc 249
           |||||| |||||||||||||   |||| ||||||| ||  || |||| | | |||  |||
Sbjct: 79  gagaagccaaagcactggacaaacaacatacccaaggttctcatgatcgacggcgccgtc 138

                                
Query: 250 gccctggcttgcaccttcgac 270
           |||||||||||||||||||||
Sbjct: 139 gccctggcttgcaccttcgac 159



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>gb|DQ427307.1| Sorghum bicolor voucher PI585454 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427306.1| Sorghum bicolor voucher PI267539 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427305.1| Sorghum bicolor voucher PI267408 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427304.1| Sorghum bicolor voucher PI221607 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427303.1| Sorghum bicolor voucher PI152702 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427302.1| Sorghum bicolor voucher NSL92371 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427301.1| Sorghum bicolor voucher NSL87902b locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427300.1| Sorghum bicolor voucher NSL87902a locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427299.1| Sorghum bicolor voucher NSL87666 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427298.1| Sorghum bicolor voucher NSL77217 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427297.1| Sorghum bicolor voucher NSL77034 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427296.1| Sorghum bicolor voucher NSL56174 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427295.1| Sorghum bicolor voucher NSL56003 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427294.1| Sorghum bicolor voucher NSL55243 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427293.1| Sorghum bicolor voucher NSL51365 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427292.1| Sorghum bicolor voucher NSL51030 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427291.1| Sorghum bicolor voucher NSL50875 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|DQ427290.1| Sorghum bicolor voucher BTx623 locus CSU535 genomic sequence
          Length = 689

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                       
Query: 189 cgagaagncaaagcactggacggncaacctacccaaagtcttcgtgataggcagcgtggt 248
           ||||||| |||||||||||||   |||  ||||||| ||  || |||||||| | |  ||
Sbjct: 18  cgagaagccaaagcactggacaaacaatatacccaaggttctcatgataggcggtgccgt 77

                             
Query: 249 cgccctggcttgcacctt 266
           ||||||||||||||||||
Sbjct: 78  cgccctggcttgcacctt 95



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>gb|BT018884.1| Zea mays clone EL01T0205B04.d mRNA sequence
          Length = 1603

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                  
Query: 1    cagggcatgtggggctgngtcaaacggattgagcctggcctccgtgcataccag 54
            ||||| ||||||||||| |||||  |||| ||||||||||| || || ||||||
Sbjct: 973  caggggatgtggggctgcgtcaagaggatagagcctggccttcgggcgtaccag 1026



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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 56      ccgccagggctgccggcgaacc 77
               ||||||||||||||||||||||
Sbjct: 1919030 ccgccagggctgccggcgaacc 1919009



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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 56      ccgccagggctgccggcgaacc 77
               ||||||||||||||||||||||
Sbjct: 2397997 ccgccagggctgccggcgaacc 2398018



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>gb|DQ427308.1| Sorghum propinquum locus CSU535 genomic sequence
          Length = 696

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 gtcgccctggcttgcacctt 266
           ||||||||||||||||||||
Sbjct: 76  gtcgccctggcttgcacctt 95


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,360,827
Number of Sequences: 3902068
Number of extensions: 1360827
Number of successful extensions: 18193
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18102
Number of HSP's gapped (non-prelim): 72
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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