ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd20f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1) 88 8e-18
2MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1) 56 4e-08
3MT1_ORYSA (Q40633) Metallothionein-like protein 1 48 9e-06
4MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1) 38 0.012
5MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1) 38 0.012
6MT25_BRAJU (P56172) Metallothionein-like protein type 2, MT2-28 28 9.4
7MT23_BRAJU (P56170) Metallothionein-like protein type 2, MT2-22 28 9.4

>MT1_WHEAT (P43400) Metallothionein-like protein 1 (MT-1)|
          Length = 75

 Score = 88.2 bits (217), Expect = 8e-18
 Identities = 43/45 (95%), Positives = 44/45 (97%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQSGEGCS 222
           KMYPDLTEQGSA AQVAAVVVLG+APENKAGQFEVAAGQSGEGCS
Sbjct: 19  KMYPDLTEQGSAAAQVAAVVVLGVAPENKAGQFEVAAGQSGEGCS 63



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>MT1_FESRU (O24528) Metallothionein-like protein 1 (MT-1)|
          Length = 70

 Score = 55.8 bits (133), Expect = 4e-08
 Identities = 31/44 (70%), Positives = 34/44 (77%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQSGEGC 219
           KMYPDL EQ S T Q  AVVV+G+A ENKAGQFE+A   SGEGC
Sbjct: 19  KMYPDLDEQASTTTQ--AVVVVGVAHENKAGQFEMA---SGEGC 57



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>MT1_ORYSA (Q40633) Metallothionein-like protein 1|
          Length = 74

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 27/47 (57%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAA--GQSGEGCS 222
           K YPDL E+ S+T    A VVLG+APE KA QFE AA  G++  GCS
Sbjct: 19  KKYPDLEEKSSSTK---ATVVLGVAPEKKAQQFEAAAESGETAHGCS 62



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>MT1_MAIZE (P30571) Metallothionein-like protein 1 (MT-1)|
          Length = 76

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAG-QFEVAAGQSGE---GCS 222
           K YPDL E  +A       VVLG+APE KA  +F  AA +SGE   GCS
Sbjct: 19  KKYPDLEETSTAAQPT---VVLGVAPEKKAAPEFVEAAAESGEAAHGCS 64



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>MT1_HORVU (P26571) Metallothionein-like protein 1 (MT-1)|
          Length = 74

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 24/47 (51%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAA--GQSGEGCS 222
           KMYPDL E+  AT QV  V+VLG+   +   QFE AA  G++  GCS
Sbjct: 19  KMYPDLEEKSGATMQV-TVIVLGVG--SAKVQFEEAAEFGEAAHGCS 62



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>MT25_BRAJU (P56172) Metallothionein-like protein type 2, MT2-28|
          Length = 80

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQS 207
           KMYPDL+  G  T      +VLG+AP   + QFE A+G++
Sbjct: 23  KMYPDLSFSGETT--TTETLVLGLAPAMNS-QFE-ASGET 58



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>MT23_BRAJU (P56170) Metallothionein-like protein type 2, MT2-22|
          Length = 80

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 88  KMYPDLTEQGSATAQVAAVVVLGMAPENKAGQFEVAAGQS 207
           KMYPDL+  G  T   A  +VLG+AP   + Q+E A+G++
Sbjct: 23  KMYPDLSFSGETTTSEA--LVLGVAPSMNS-QYE-ASGET 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,260,692
Number of Sequences: 219361
Number of extensions: 343930
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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