| Clone Name | basd20e22 |
|---|---|
| Clone Library Name | barley_pub |
>PSA6_ORYSA (Q9LSU3) Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S| proteasome alpha subunit A) (20S proteasome subunit alpha-1) Length = 246 Score = 73.2 bits (178), Expect = 2e-13 Identities = 37/42 (88%), Positives = 38/42 (90%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD TS+THLF ITKY GLLATGLTADARSLV QARNEAA Sbjct: 58 DKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAA 99
>PSA6_SOYBN (O48551) Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S| proteasome alpha subunit A) (20S proteasome subunit alpha-1) (Proteasome iota subunit) Length = 246 Score = 72.8 bits (177), Expect = 3e-13 Identities = 35/42 (83%), Positives = 39/42 (92%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD+TS+THLF ITKY GLLATG+TADAR+LV QARNEAA Sbjct: 58 DKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAA 99
>PSA6_TOBAC (Q9XG77) Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S| proteasome alpha subunit A) (20S proteasome subunit alpha-1) Length = 246 Score = 70.9 bits (172), Expect = 1e-12 Identities = 34/42 (80%), Positives = 38/42 (90%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD TS++HLF ITKY GLLATG+TADAR+LV QARNEAA Sbjct: 58 DKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAA 99
>PSA6A_ARATH (O81146) Proteasome subunit alpha type 6-A (EC 3.4.25.1)| (Proteasome subunit alpha type 1) (20S proteasome alpha subunit A-1) (Proteasome component 1) Length = 246 Score = 69.7 bits (169), Expect = 2e-12 Identities = 33/42 (78%), Positives = 38/42 (90%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD +S+THLF ITKY GL+ATG+TADARSLV QARN+AA Sbjct: 58 DKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAA 99
>PSA6B_ARATH (O81147) Proteasome subunit alpha type 6-B (EC 3.4.25.1)| (Proteasome subunit alpha type 1) (20S proteasome alpha subunit A-2) Length = 246 Score = 68.9 bits (167), Expect = 4e-12 Identities = 32/42 (76%), Positives = 38/42 (90%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD +S++HLF +TKY GLLATG+TAD+RSLV QARNEAA Sbjct: 58 DKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAA 99
>PSA6_RAT (P60901) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) Length = 246 Score = 53.1 bits (126), Expect = 2e-07 Identities = 25/42 (59%), Positives = 33/42 (78%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD +++THLF IT+ G + TG+TAD+RS V +AR EAA Sbjct: 58 DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAA 99
>PSA6_MOUSE (Q9QUM9) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) Length = 246 Score = 53.1 bits (126), Expect = 2e-07 Identities = 25/42 (59%), Positives = 33/42 (78%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD +++THLF IT+ G + TG+TAD+RS V +AR EAA Sbjct: 58 DKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAA 99
>PSA6_HUMAN (P60900) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| iota chain) (Macropain iota chain) (Multicatalytic endopeptidase complex iota chain) (27 kDa prosomal protein) (PROS-27) (p27K) Length = 246 Score = 53.1 bits (126), Expect = 2e-07 Identities = 25/42 (59%), Positives = 33/42 (78%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD +++THLF IT+ G + TG+TAD+RS V +AR EAA Sbjct: 58 DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAA 99
>PSA6_SCHPO (O94517) Probable proteasome subunit alpha type 6 (EC 3.4.25.1)| Length = 244 Score = 47.8 bits (112), Expect = 9e-06 Identities = 23/42 (54%), Positives = 32/42 (76%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKL+D +++ H+F ITK G + TG ADAR+ VS+AR+EAA Sbjct: 56 DKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAA 97
>PSA1_TRYBB (Q9GU37) Proteasome subunit alpha type 1 (EC 3.4.25.1) (20SPA1)| Length = 266 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/42 (42%), Positives = 28/42 (66%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKL+ +IT L+++ TG+ TG D ++LV +ARNEA+ Sbjct: 55 DKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEAS 96
>PSA6_DROME (Q9XZJ4) Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S| proteasome subunit alpha-1) Length = 244 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/42 (50%), Positives = 27/42 (64%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 +K + ++THLF ITK G TG AD+RS V +AR EAA Sbjct: 58 EKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAA 99
>PSA6_YEAST (P21243) Proteasome component C7-alpha (EC 3.4.25.1) (Macropain| subunit C7-alpha) (Proteinase YSCE subunit 7) (Multicatalytic endopeptidase complex C7) (Component Y8) (SCL1 suppressor protein) Length = 252 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/42 (40%), Positives = 29/42 (69%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 DKLLD T+++++F I++ G++ G DAR+ +A+ EAA Sbjct: 61 DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAA 102
>PSMA_METAC (Q8TPX5) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 247 Score = 38.1 bits (87), Expect = 0.007 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 +L++ SI +F I ++ G +GL ADARSLV +AR EA Sbjct: 56 RLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEA 95
>PSA3_RAT (P18422) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) (Proteasome subunit K) Length = 254 Score = 37.7 bits (86), Expect = 0.009 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 KL ++ S LF++ ++ G+ GL ADARSL AR EA+ Sbjct: 56 KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEAS 96
>PSA3_MOUSE (O70435) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) (Proteasome subunit K) Length = 254 Score = 37.7 bits (86), Expect = 0.009 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 KL ++ S LF++ ++ G+ GL ADARSL AR EA+ Sbjct: 56 KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEAS 96
>PSA3_HUMAN (P25788) Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome| component C8) (Macropain subunit C8) (Multicatalytic endopeptidase complex subunit C8) Length = 254 Score = 37.7 bits (86), Expect = 0.009 Identities = 18/41 (43%), Positives = 26/41 (63%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 KL ++ S LF++ ++ G+ GL ADARSL AR EA+ Sbjct: 56 KLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEAS 96
>PSMA_METMA (Q8PTU1) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 249 Score = 37.4 bits (85), Expect = 0.012 Identities = 19/40 (47%), Positives = 26/40 (65%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 +L++ SI +F I + G +GL ADARSLV +AR EA Sbjct: 58 RLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEA 97
>PSA5_YEAST (P32379) Proteasome component PUP2 (EC 3.4.25.1) (Macropain subunit| PUP2) (Proteinase YSCE subunit PUP2) (Multicatalytic endopeptidase complex subunit PUP2) Length = 260 Score = 35.8 bits (81), Expect = 0.034 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 LL+ SI + I ++ G +GLTADARS++ AR A Sbjct: 58 LLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAA 96
>PSMA_METMP (Q6M0L9) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 259 Score = 34.7 bits (78), Expect = 0.076 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 KL+D +SI +F I + +GL ADAR L+ +AR EA Sbjct: 59 KLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARIEA 98
>PSA5_SCHPO (Q9UT97) Probable proteasome subunit alpha type 5 (EC 3.4.25.1)| Length = 247 Score = 34.7 bits (78), Expect = 0.076 Identities = 15/36 (41%), Positives = 23/36 (63%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQAR 116 L++ S+ LF I + G +GLTADAR+++ AR Sbjct: 58 LMESHSVEKLFEIDSHIGCAISGLTADARTIIEHAR 93
>PSA5_ENTHI (Q94561) Proteasome subunit alpha type 5 (EC 3.4.25.1)| Length = 247 Score = 33.5 bits (75), Expect = 0.17 Identities = 17/39 (43%), Positives = 24/39 (61%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 L+ +SI + I + G +GLTADAR+L+ AR EA Sbjct: 58 LMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEA 96
>PSMA_ARCFU (O29760) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 246 Score = 32.0 bits (71), Expect = 0.49 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 KLL+ +I ++ I ++ +GL ADAR L+ +AR EA Sbjct: 57 KLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEA 96
>PSMA_SULSO (Q9UXC6) Proteasome alpha subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha subunit) Length = 241 Score = 30.8 bits (68), Expect = 1.1 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 LLD SI +F I + G GL +D R L+ ARN A Sbjct: 60 LLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIA 98
>PSA1_DICDI (Q27562) Proteasome subunit alpha type 1 (EC 3.4.25.1) (Proteasome| subunit C2) Length = 248 Score = 30.8 bits (68), Expect = 1.1 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 36 LFSITKYTGLLATGLTADARSLVSQARNEAA 128 +F + + G+ +GLTADAR L + RNE + Sbjct: 63 IFVVDDHVGIAISGLTADARMLCNYMRNECS 93
>PSA7L_MOUSE (Q9CWH6) Proteasome subunit alpha type 7-like (EC 3.4.25.1)| Length = 250 Score = 30.4 bits (67), Expect = 1.4 Identities = 14/39 (35%), Positives = 25/39 (64%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D+ ++ + ++ + + GLTADAR ++S+AR E Sbjct: 54 KLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVE 92
>PSA6_CAEEL (O17586) Proteasome subunit alpha type 6 (EC 3.4.25.1) (Proteasome| subunit alpha 1) Length = 246 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/42 (30%), Positives = 25/42 (59%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEAA 128 D L+ ++T ++ I++ G A G+ DA+ + +A+ EAA Sbjct: 58 DSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAA 99
>RNF31_HUMAN (Q96EP0) RING finger protein 31 (Zinc in-between-RING-finger| ubiquitin-associated domain protein) Length = 1072 Score = 29.3 bits (64), Expect = 3.2 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = +1 Query: 28 SRTSSPLPSTPACLPPASQLMRGPWSP 108 +RTSSP+P+ A P AS L +GP P Sbjct: 433 NRTSSPIPAQHAPRPYASSLEKGPPKP 459
>PSMA1_HALVO (Q9V2V6) Proteasome alpha-1 subunit (EC 3.4.25.1) (Multicatalytic| endopeptidase complex alpha-1 subunit) Length = 252 Score = 28.9 bits (63), Expect = 4.1 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 L++ TS+ + + G+ + G ADAR L+ AR+++ Sbjct: 60 LMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQS 98
>Z3H7B_HUMAN (Q9UGR2) Zinc finger CCCH-type domain-containing protein 7B| (Rotavirus 'X'-associated non-structural protein) (RoXaN) Length = 993 Score = 28.9 bits (63), Expect = 4.1 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +1 Query: 22 PASRTSSPLPSTPACLPPASQLMRGPWSPKQEMKQ 126 P S P PS C+P + L++ P + E KQ Sbjct: 405 PPSGAQKPAPSPEPCMPNTALLIKNPLAATHEFKQ 439
>PSA7_CARAU (Q9PTW9) Proteasome subunit alpha type 7 (EC 3.4.25.1) (Proteasome| subunit alpha 4) Length = 251 Score = 28.5 bits (62), Expect = 5.4 Identities = 12/39 (30%), Positives = 26/39 (66%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL ++ ++ + ++ ++ + GLTADAR ++++AR E Sbjct: 54 KLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVE 92
>PSA4_YEAST (P23638) Proteasome component Y13 (EC 3.4.25.1) (Macropain subunit| Y13) (Proteinase YSCE subunit 13) (Multicatalytic endopeptidase complex subunit Y13) Length = 258 Score = 28.5 bits (62), Expect = 5.4 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 L DTS L+ + + GLTADA L++ AR A Sbjct: 57 LEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHA 95
>PSA7_DICDI (P34120) Proteasome subunit alpha type 7 (EC 3.4.25.1) (Proteasome| component DD5) Length = 250 Score = 28.5 bits (62), Expect = 5.4 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D SI + + + L GLTAD+R L+S+A E Sbjct: 55 KLQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALME 93
>PSA7A_XENLA (Q9PVY6) Proteasome subunit alpha type 7-A (EC 3.4.25.1)| (Proteasome subunit alpha 4-A) Length = 248 Score = 28.5 bits (62), Expect = 5.4 Identities = 13/39 (33%), Positives = 25/39 (64%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D+ ++ + ++ + + GLTADAR ++++AR E Sbjct: 52 KLQDERTVRKICALDENVFMAFAGLTADARIVINRARVE 90
>PSA73_DROVI (O16812) Proteasome subunit alpha type 7-1B (EC 3.4.25.1)| (Testis-specific proteasome 28 kDa subunit 1B) Length = 245 Score = 28.5 bits (62), Expect = 5.4 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +3 Query: 3 DKLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 D L + + + I ++ + GLTADAR LVS+A+ EA Sbjct: 50 DSLQIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEA 90
>PSA7B_XENLA (Q9PVQ1) Proteasome subunit alpha type 7-B (EC 3.4.25.1)| (Proteasome subunit alpha 4-B) Length = 247 Score = 28.5 bits (62), Expect = 5.4 Identities = 13/39 (33%), Positives = 25/39 (64%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D+ ++ + ++ + + GLTADAR ++++AR E Sbjct: 52 KLQDERTVRKICALDENVFMAFAGLTADARIVINRARVE 90
>PSA7_CHICK (O13268) Proteasome subunit alpha type 7 (EC 3.4.25.1) (GPRO-28)| Length = 249 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D+ ++ + ++ + GLTADAR ++++AR E Sbjct: 52 KLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVE 90
>PSA73_DROME (Q27575) Proteasome subunit alpha type 7-1B (EC 3.4.25.1)| (Testis-specific proteasome 28 kDa subunit 1B) (Testis-specific alpha4-t2 proteasome subunit) Length = 252 Score = 27.7 bits (60), Expect = 9.2 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +3 Query: 9 LLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNEA 125 L ++ + + + + + +GLTADAR LVS+A+ EA Sbjct: 55 LQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEA 93
>PSA7_MOUSE (Q9Z2U0) Proteasome subunit alpha type 7 (EC 3.4.25.1) (Proteasome| subunit RC6-1) Length = 248 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D+ ++ + ++ + GLTADAR ++++AR E Sbjct: 52 KLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVE 90
>PSA7_HUMAN (O14818) Proteasome subunit alpha type 7 (EC 3.4.25.1) (Proteasome| subunit RC6-1) (Proteasome subunit XAPC7) Length = 248 Score = 27.7 bits (60), Expect = 9.2 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +3 Query: 6 KLLDDTSITHLFSITKYTGLLATGLTADARSLVSQARNE 122 KL D+ ++ + ++ + GLTADAR ++++AR E Sbjct: 52 KLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVE 90 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.123 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,456,909 Number of Sequences: 219361 Number of extensions: 284692 Number of successful extensions: 1309 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 1213 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1308 length of database: 80,573,946 effective HSP length: 18 effective length of database: 76,625,448 effective search space used: 1839010752 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)