ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd20e05 |
|---|---|
| Clone Library Name | barley_pub |
>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)| Length = 1972 Score = 32.0 bits (71), Expect = 0.61 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +2 Query: 80 SLPIHPRRRLQNHSLNRMLLLAPMAKHPPRKVRVRSASPEAELAVAGKLMPNHRMEQKM 256 S P HP++ L+N+ N L A + H P V ++S EA LA+ K ++ + + Sbjct: 270 SSPAHPKQTLENNHPNPFLTNALLGNHQPNGV-IQSVIQEAPLALTTKTKMQSKINENI 327
>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking| family 7) Length = 5327 Score = 31.6 bits (70), Expect = 0.80 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = +1 Query: 127 SDASVGPNGKASPEEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLD 267 S AS G KA+ + + S+PGSR G R + A S+ G++ + D Sbjct: 5231 SPASTG--AKANRADPKKSASRPGSRAGSRAGSRASSRRGSDASDFD 5275
>MSA2_PLAFH (Q99319) Merozoite surface antigen 2 precursor (MSA-2) (Allelic| form 3) Length = 281 Score = 31.2 bits (69), Expect = 1.0 Identities = 17/77 (22%), Positives = 32/77 (41%) Frame = +1 Query: 19 GSGSVTNAAPTAGNGTPARPQXXXXXXXXXXXXQLESDASVGPNGKASPEEGESEVSKPG 198 G G+V +A A G A+ +++AS + + +P ++ + G Sbjct: 85 GDGAVASAGNGANPGADAKRSTSTPATTTTTTTTNDAEASTSTSSE-NPNHNNAKTNPKG 143 Query: 199 SRVGRRRKANAKSQNGT 249 V KAN ++QN + Sbjct: 144 KEVQEPNKANTETQNNS 160
>EMB30_ARATH (Q42510) Pattern formation protein EMB30| Length = 1451 Score = 30.8 bits (68), Expect = 1.4 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = +1 Query: 226 NAKSQNGTEDAGLDNPDLGPFLLKHARDL--IASDNPRRALKYALRATKSFEKCAGGKPS 399 +AK G ED G + D+G L+ + L + D +AL+ S +KC GG Sbjct: 1224 SAKENMGEEDFGKMSQDIGEMWLRLVQGLRKVCLDQREDVRNHALQ---SLQKCLGGVDG 1280 Query: 400 LNLVMS 417 +NL S Sbjct: 1281 INLAHS 1286
>MACF4_HUMAN (Q96PK2) Microtubule-actin crosslinking factor 1, isoform 4| Length = 5938 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/80 (21%), Positives = 30/80 (37%) Frame = +1 Query: 28 SVTNAAPTAGNGTPARPQXXXXXXXXXXXXQLESDASVGPNGKASPEEGESEVSKPGSRV 207 S T P++G+ S + K + + + S+PGSR Sbjct: 5807 SGTKVIPSSGSKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRA 5866 Query: 208 GRRRKANAKSQNGTEDAGLD 267 G R + A S+ G++ + D Sbjct: 5867 GSRAGSRASSRRGSDASDFD 5886
>MACF1_HUMAN (Q9UPN3) Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5| (Actin cross-linking family protein 7) (Macrophin-1) (Trabeculin-alpha) (620 kDa actin-binding protein) (ABP620) Length = 5430 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/80 (21%), Positives = 30/80 (37%) Frame = +1 Query: 28 SVTNAAPTAGNGTPARPQXXXXXXXXXXXXQLESDASVGPNGKASPEEGESEVSKPGSRV 207 S T P++G+ S + K + + + S+PGSR Sbjct: 5299 SGTKVIPSSGSKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRADPKKSASRPGSRA 5358 Query: 208 GRRRKANAKSQNGTEDAGLD 267 G R + A S+ G++ + D Sbjct: 5359 GSRAGSRASSRRGSDASDFD 5378
>CP4A4_RABIT (P10611) Cytochrome P450 4A4 precursor (EC 1.14.14.1) (CYPIVA4)| (Prostaglandin omega-hydroxylase) (P450-P-2) Length = 510 Score = 30.0 bits (66), Expect = 2.3 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 8/88 (9%) Frame = -2 Query: 403 SSLAFHLHISQMTWWHGEHISALAVDYQ-------RQSSLLHA*EEMDQGLGYRAQHLLF 245 SSL H+S MT + I A YQ S + A +++ + YRA+++ Sbjct: 181 SSLEIFQHVSLMTL---DTIMKCAFSYQGSVQLDRNSHSYIQAINDLNNLVFYRARNVFH 237 Query: 244 HSVIWH*LSGDGQLGFRAC-*PHSHLPR 164 S + LS +G+L RAC H H R Sbjct: 238 QSDFLYRLSPEGRLFHRACQLAHEHTDR 265
>TIM50_ASPFU (Q4WI16) Import inner membrane translocase subunit tim50,| mitochondrial precursor Length = 501 Score = 29.3 bits (64), Expect = 3.9 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 16/62 (25%) Frame = +1 Query: 118 QLESDASVGPNGKASPEEGESEVSKPGSRV----------------GRRRKANAKSQNGT 249 Q E D P G A+PE E+ SKP + GR +K+ S N T Sbjct: 52 QTEFDTKADPAGNAAPEASEATESKPQQPLPDLTQGIPSTLAAELEGRTKKSGQTSLNLT 111 Query: 250 ED 255 ED Sbjct: 112 ED 113
>CTCF_MOUSE (Q61164) Transcriptional repressor CTCF (CCCTC-binding factor)| (CTCFL paralog) (11-zinc finger protein) Length = 736 Score = 29.3 bits (64), Expect = 3.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = +1 Query: 127 SDASVGPNGKASPEEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDL 279 +D GP+G GE++ SK G R+RK +K ++ ++ PDL Sbjct: 574 ADNCAGPDGVEGENGGETKKSKRG----RKRKMRSKKEDSSDSEENAEPDL 620
>CIC_HUMAN (Q96RK0) Protein capicua homolog| Length = 1608 Score = 29.3 bits (64), Expect = 3.9 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Frame = +1 Query: 1 EEEKEKGSGSVTNA-APTAGNGTPARPQXXXXXXXXXXXXQLESDASVGPNGKASPEEGE 177 +EE+E G V +A AP+ G PA P + S V K P G Sbjct: 637 KEEQEGGGARVPSAPAPSLAYGAPAAPLSRPAATMVTNVVRPVSSTPVPIASKPFPTSGR 696 Query: 178 SEVSKPGSRVGRRRKANAKSQ 240 +E S P G R + S+ Sbjct: 697 AEAS-PNDTAGARTEMGTGSR 716
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 29.3 bits (64), Expect = 3.9 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Frame = +1 Query: 118 QLESDASVGPNGKASPEEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDLGPFLLK 297 QL+SDA+ P ASP + +S +R+ A++ + + PD L + Sbjct: 968 QLDSDAAFVPAPGASPYPDDGGLSPEATRMAEEALRQARAMDAAKLTAELAPDARARLRE 1027 Query: 298 HARDLIAS-DNPRRALKYALRATKSF 372 AR L A + R K A A + F Sbjct: 1028 RARSLEAMLEGARERAKVARDAREKF 1053
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 28.9 bits (63), Expect = 5.2 Identities = 12/15 (80%), Positives = 13/15 (86%) Frame = -1 Query: 284 GPRSGLSSPASSVPF 240 GP SGLS+PASS PF Sbjct: 977 GPSSGLSNPASSAPF 991
>GLMU_PSEHT (Q3IK30) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 452 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 176 RVRSASPEAELAVAGKLMPNHRMEQ-KMLGSITQTLVH 286 R+RSA P+ VAGK M H ++ K LG+ T LV+ Sbjct: 15 RMRSALPKVLHKVAGKTMVQHVIDNAKALGATTTNLVY 52
>EX7S_RHOBA (Q7UWB5) Probable exodeoxyribonuclease VII small subunit (EC| 3.1.11.6) (Exonuclease VII small subunit) Length = 139 Score = 28.9 bits (63), Expect = 5.2 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +1 Query: 172 GESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDL 279 GES V K SR G+RR A A + ++ G+D+ DL Sbjct: 98 GESLVQKQASR-GKRRGAVAPDHSASDTTGVDSADL 132
>MSA2_PLAF2 (Q03646) Merozoite surface antigen 2 precursor (MSA-2)| Length = 347 Score = 28.9 bits (63), Expect = 5.2 Identities = 17/77 (22%), Positives = 33/77 (42%) Frame = +1 Query: 19 GSGSVTNAAPTAGNGTPARPQXXXXXXXXXXXXQLESDASVGPNGKASPEEGESEVSKPG 198 G+G+ A +AGNG A +++AS + + S +E + G Sbjct: 151 GNGAGNGAVASAGNGAVAERSSSTPATTTTTTTTNDAEASTSTSSENS-NHNNAETNPKG 209 Query: 199 SRVGRRRKANAKSQNGT 249 + + +AN ++QN + Sbjct: 210 NGEVQPNQANKETQNNS 226
>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) Length = 1790 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +1 Query: 148 NGKASPEEGESEVSK-PGSRVGRRRKANAKSQNGTEDAGLDNPDL 279 N K +P+ E E PG G + K + K + G E NP+L Sbjct: 910 NAKDNPKSKEKESENVPGDGKGNKHKKHRKRRKGEESESFLNPEL 954
>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular| protein of testis) (Proliferation potential-related protein) (Protein P2P-R) (Retinoblastoma-binding Q protein 1) (Protein RBQ-1) Length = 1792 Score = 28.5 bits (62), Expect = 6.7 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 166 EEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDL 279 +E ESE + PG G + K + K + G E G NP+L Sbjct: 917 KEKESE-NAPGDGKGNKHKKHRKRRKGEESEGFLNPEL 953
>WIN1_SCHPO (O74304) MAP kinase kinase kinase win1 (EC 2.7.11.25)| Length = 1436 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/94 (21%), Positives = 39/94 (41%) Frame = +2 Query: 29 VLQMQHLLLAMGPLPGLSLPIHPRRRLQNHSLNRMLLLAPMAKHPPRKVRVRSASPEAEL 208 ++ ++H+ P +LP P+R +H L + A + HP RK ++R S + Sbjct: 193 MIDVEHINSTAVPSKTKNLPEKPKR---SHKLRNSITFAKIEDHPERKSQLRRLSSSLKC 249 Query: 209 AVAGKLMPNHRMEQKMLGSITQTLVHFFLSMQET 310 P + L + ++F ++ ET Sbjct: 250 -----FDPEYDYNDPSLSIRRDSSTYYFSNVNET 278
>UL14_EHV1V (P84404) Hypothetical gene 48 protein| Length = 317 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/62 (33%), Positives = 26/62 (41%) Frame = +1 Query: 127 SDASVGPNGKASPEEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDLGPFLLKHAR 306 S S P + +PE+ KPG A +SQ T D L +PD G L R Sbjct: 172 SPRSTCPAPRKAPEDARCGARKPGEVNNYTPSAQPRSQETTVD-HLASPDEGTRLGDRTR 230 Query: 307 DL 312 DL Sbjct: 231 DL 232
>UL14_EHV1B (P28949) Hypothetical gene 48 protein| Length = 317 Score = 28.1 bits (61), Expect = 8.8 Identities = 21/62 (33%), Positives = 26/62 (41%) Frame = +1 Query: 127 SDASVGPNGKASPEEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDLGPFLLKHAR 306 S S P + +PE+ KPG A +SQ T D L +PD G L R Sbjct: 172 SPRSTCPAPRKAPEDARCGARKPGEVNNYTPSAQPRSQETTVD-HLASPDEGTRLGDRTR 230 Query: 307 DL 312 DL Sbjct: 231 DL 232
>TBX6L_CHICK (P79779) T-box-containing protein TBX6L (Fragment)| Length = 361 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/43 (25%), Positives = 23/43 (53%) Frame = +1 Query: 148 NGKASPEEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPD 276 +GK + EG ++ KP G++RK + ++G E+ + + Sbjct: 210 HGKNTRREGRAKSQKPSPAKGQKRKLPEEKESGAEERDFEKDE 252
>OCLN_CHICK (Q91049) Occludin| Length = 504 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +1 Query: 148 NGKASPEEGESEVSKPGSRVGRRRKAN 228 +G+ E+G+ + S+P +R GRRR+ N Sbjct: 345 HGEEEEEKGKDQPSRPPARRGRRRRRN 371
>ATG18_MAGGR (Q524W4) Autophagy-related protein 18| Length = 469 Score = 28.1 bits (61), Expect = 8.8 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = +1 Query: 142 GPNGKASP-----EEGESEVSKPGSRVGRRRKANAKSQNGTEDAGLDNPDLGPFLLKHAR 306 GPN AS GE + PG + +A+ S++ + D+G ++P G A Sbjct: 266 GPNNGASGAAGAGSAGEVLAASPGQDITGSPRADRWSRSRSYDSGNESPGSG----SEAN 321 Query: 307 DLIASDNPR 333 D+ S +PR Sbjct: 322 DIAGSPSPR 330 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.304 0.125 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,645,910 Number of Sequences: 219361 Number of extensions: 1339021 Number of successful extensions: 2529 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2524 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits)
