ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd20e04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ622892.1| Triticum durum partial mRNA for DRP5 protein (drg5 gene) Length = 478 Score = 357 bits (180), Expect = 9e-96 Identities = 210/220 (95%), Gaps = 1/220 (0%) Strand = Plus / Minus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| Sbjct: 460 gggtgctgctcacgctgg-aggagaagaaggtgccctaccagatgaagctcatcgacgtc 402 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct: 401 agcaacaagcccgactggttcctgaagatcaatccagagggcaaggtgcctgtgtataac 342 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 341 ggtggtgatggcaaatggattgctgattctgatgtgatcactcaagtcattgaggagaag 282 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 ||||||||||||||||||||||||||| |||| ||||||| Sbjct: 281 tacccaactccatcacttgtgacccctgctgaatatgcat 242
>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 956 Score = 349 bits (176), Expect = 2e-93 Identities = 209/220 (95%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||||||| ||| |||||||||| ||||||||| |||||||||||||||||||| Sbjct: 145 gggtgctgctcacgttgg-aggagaagaaggtgccctaccagatgaagctcatcgacgtc 203 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct: 204 agcaacaagcccgactggttcctgaagatcaatccagagggcaaggtgcctgtgtataac 263 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 264 ggtggtgatggcaaatggattgctgattctgatgtgatcactcaagtcattgaggagaag 323 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 ||||||||||||||||||||||||||| |||| ||||||| Sbjct: 324 tacccaactccatcacttgtgacccctgctgaatatgcat 363
>gb|AY074786.1| Oryza sativa dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 1067 Score = 278 bits (140), Expect = 7e-72 Identities = 200/220 (90%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 153 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 211 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||| Sbjct: 212 cagaacaagcccgactggtttctgaagatcagcccagaggggaaggtgcctgtgtttaac 271 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 272 ggtggtgatggcaaatggattcctgattctgatgtgatcactcaagtcattgaggagaag 331 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 |||||||| || || ||||| ||||||||||||||||||| Sbjct: 332 tacccaaccccgtctcttgtcacccctcctgagtatgcat 371
>dbj|AK070895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074C02, full insert sequence Length = 1198 Score = 278 bits (140), Expect = 7e-72 Identities = 200/220 (90%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 154 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 212 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||| Sbjct: 213 cagaacaagcccgactggtttctgaagatcagcccagaggggaaggtgcctgtgtttaac 272 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 273 ggtggtgatggcaaatggattcctgattctgatgtgatcactcaagtcattgaggagaag 332 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 |||||||| || || ||||| ||||||||||||||||||| Sbjct: 333 tacccaaccccgtctcttgtcacccctcctgagtatgcat 372
>dbj|AK061836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D08, full insert sequence Length = 1053 Score = 278 bits (140), Expect = 7e-72 Identities = 200/220 (90%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 158 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 216 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||||||||||||||| |||||||||| |||||||| | |||||||| ||||||| Sbjct: 217 cagaacaagcccgactggtttctgaagatcagcccagaggggaaggtgcctgtgtttaac 276 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 277 ggtggtgatggcaaatggattcctgattctgatgtgatcactcaagtcattgaggagaag 336 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 |||||||| || || ||||| ||||||||||||||||||| Sbjct: 337 tacccaaccccgtctcttgtcacccctcctgagtatgcat 376
>dbj|AB037970.1| Oryza sativa (japonica cultivar-group) DHAR1 mRNA for GSH-dependent dehydroascorbate reductase 1, complete cds Length = 1044 Score = 270 bits (136), Expect = 2e-69 Identities = 199/220 (90%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 123 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 181 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||| ||||||||||| |||||||||| |||||||| | |||||||| ||||||| Sbjct: 182 cagaacaaccccgactggtttctgaagatcagcccagaggggaaggtgcctgtgtttaac 241 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| Sbjct: 242 ggtggtgatggcaaatggattcctgattctgatgtgatcactcaagtcattgaggagaag 301 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 |||||||| || || ||||| ||||||||||||||||||| Sbjct: 302 tacccaaccccgtctcttgtcacccctcctgagtatgcat 341
>gb|AY106435.1| Zea mays PCO106999 mRNA sequence Length = 1141 Score = 190 bits (96), Expect = 1e-45 Identities = 189/220 (85%), Gaps = 1/220 (0%) Strand = Plus / Plus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||||||||||| |||||||||| || || |||||| |||||||| ||||| || Sbjct: 167 gggtgctgctcacgctgg-aggagaagaaggtcccgtacgaggtgaagctcgtcgacctc 225 Query: 61 agcaacaagcccgactggttcctgaagatcaatccagagggcanggtgcctgngtttaac 120 ||||||||||||| ||||| ||||| |||| |||||||| | ||||||| ||| ||| Sbjct: 226 ggcaacaagcccgaatggtttctgaacatcagcccagagggtaaggtgcctttgttcaac 285 Query: 121 ggnggtgatggcaaatggattgctgattctgatgtgattactcaagtcattgaggagaag 180 || || ||||||||||| ||||||||||||||||| || || |||||||||||||||||| Sbjct: 286 ggtggagatggcaaatgcattgctgattctgatgtaatcacccaagtcattgaggagaag 345 Query: 181 tacccaactccatcacttgtgacccctcctgagtatgcat 220 | ||||||||| || || || |||||||| || ||||||| Sbjct: 346 ttcccaactccttctctggtcacccctccagaatatgcat 385
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 188 bits (95), Expect = 5e-45 Identities = 131/144 (90%) Strand = Plus / Minus Query: 77 ggttcctgaagatcaatccagagggcanggtgcctgngtttaacggnggtgatggcaaat 136 |||| |||||||||| |||||||| | |||||||| ||||||||| ||||||||||||| Sbjct: 51952 ggtttctgaagatcagcccagaggggaaggtgcctgtgtttaacggtggtgatggcaaat 51893 Query: 137 ggattgctgattctgatgtgattactcaagtcattgaggagaagtacccaactccatcac 196 ||||| |||||||||||||||| ||||||||||||||||||||||||||||| || || | Sbjct: 51892 ggattcctgattctgatgtgatcactcaagtcattgaggagaagtacccaaccccgtctc 51833 Query: 197 ttgtgacccctcctgagtatgcat 220 |||| ||||||||||||||||||| Sbjct: 51832 ttgtcacccctcctgagtatgcat 51809 Score = 95.6 bits (48), Expect = 5e-17 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 53259 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 53201 Query: 61 agcaacaagcccgactggt 79 |||||||||||||||| Sbjct: 53200 cagaacaagcccgactggt 53182
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 188 bits (95), Expect = 5e-45 Identities = 131/144 (90%) Strand = Plus / Minus Query: 77 ggttcctgaagatcaatccagagggcanggtgcctgngtttaacggnggtgatggcaaat 136 |||| |||||||||| |||||||| | |||||||| ||||||||| ||||||||||||| Sbjct: 119971 ggtttctgaagatcagcccagaggggaaggtgcctgtgtttaacggtggtgatggcaaat 119912 Query: 137 ggattgctgattctgatgtgattactcaagtcattgaggagaagtacccaactccatcac 196 ||||| |||||||||||||||| ||||||||||||||||||||||||||||| || || | Sbjct: 119911 ggattcctgattctgatgtgatcactcaagtcattgaggagaagtacccaaccccgtctc 119852 Query: 197 ttgtgacccctcctgagtatgcat 220 |||| ||||||||||||||||||| Sbjct: 119851 ttgtcacccctcctgagtatgcat 119828 Score = 95.6 bits (48), Expect = 5e-17 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 121278 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 121220 Query: 61 agcaacaagcccgactggt 79 |||||||||||||||| Sbjct: 121219 cagaacaagcccgactggt 121201
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 188 bits (95), Expect = 5e-45 Identities = 131/144 (90%) Strand = Plus / Minus Query: 77 ggttcctgaagatcaatccagagggcanggtgcctgngtttaacggnggtgatggcaaat 136 |||| |||||||||| |||||||| | |||||||| ||||||||| ||||||||||||| Sbjct: 847529 ggtttctgaagatcagcccagaggggaaggtgcctgtgtttaacggtggtgatggcaaat 847470 Query: 137 ggattgctgattctgatgtgattactcaagtcattgaggagaagtacccaactccatcac 196 ||||| |||||||||||||||| ||||||||||||||||||||||||||||| || || | Sbjct: 847469 ggattcctgattctgatgtgatcactcaagtcattgaggagaagtacccaaccccgtctc 847410 Query: 197 ttgtgacccctcctgagtatgcat 220 |||| ||||||||||||||||||| Sbjct: 847409 ttgtcacccctcctgagtatgcat 847386 Score = 95.6 bits (48), Expect = 5e-17 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand = Plus / Minus Query: 1 gggtgctgctcacgctggcaggagaagaangtgccctacgagatgaagctcatcgacgtc 60 |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 848836 gggtgctgctgactctgg-aggagaagaaggtgccctacgagatgaagctcatcgacgtc 848778 Query: 61 agcaacaagcccgactggt 79 |||||||||||||||| Sbjct: 848777 cagaacaagcccgactggt 848759
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12 Length = 306650 Score = 56.0 bits (28), Expect = 5e-05 Identities = 28/28 (100%) Strand = Plus / Minus Query: 63 caacaagcccgactggttcctgaagatc 90 |||||||||||||||||||||||||||| Sbjct: 77599 caacaagcccgactggttcctgaagatc 77572
>gb|AY823555.1| Pennisetum glaucum dehydroascorbate reductase mRNA, partial cds Length = 369 Score = 48.1 bits (24), Expect = 0.011 Identities = 24/24 (100%) Strand = Plus / Plus Query: 132 caaatggattgctgattctgatgt 155 |||||||||||||||||||||||| Sbjct: 24 caaatggattgctgattctgatgt 47
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.011 Identities = 45/52 (86%) Strand = Plus / Minus Query: 134 aatggattgctgattctgatgtgattactcaagtcattgaggagaagtaccc 185 ||||| |||||||||||||||| ||||| |||| || || ||||||||||| Sbjct: 6905125 aatgggttgctgattctgatgttattacacaagcgatagaagagaagtaccc 6905074
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 48.1 bits (24), Expect = 0.011 Identities = 45/52 (86%) Strand = Plus / Minus Query: 134 aatggattgctgattctgatgtgattactcaagtcattgaggagaagtaccc 185 ||||| |||||||||||||||| ||||| |||| || || ||||||||||| Sbjct: 94650 aatgggttgctgattctgatgttattacacaagcgatagaagagaagtaccc 94599
>dbj|AK106013.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B04, full insert sequence Length = 1123 Score = 48.1 bits (24), Expect = 0.011 Identities = 45/52 (86%) Strand = Plus / Plus Query: 134 aatggattgctgattctgatgtgattactcaagtcattgaggagaagtaccc 185 ||||| |||||||||||||||| ||||| |||| || || ||||||||||| Sbjct: 508 aatgggttgctgattctgatgttattacacaagcgatagaagagaagtaccc 559
>dbj|AK070471.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050F24, full insert sequence Length = 1197 Score = 48.1 bits (24), Expect = 0.011 Identities = 45/52 (86%) Strand = Plus / Minus Query: 134 aatggattgctgattctgatgtgattactcaagtcattgaggagaagtaccc 185 ||||| |||||||||||||||| ||||| |||| || || ||||||||||| Sbjct: 663 aatgggttgctgattctgatgttattacacaagcgatagaagagaagtaccc 612
>emb|AL162402.19| Human DNA sequence from clone RP5-1054K23 on chromosome 1p13.3-21.1, complete sequence Length = 80743 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 gaggagaagtacccaactcca 192 ||||||||||||||||||||| Sbjct: 18278 gaggagaagtacccaactcca 18298
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tcacgctggcaggagaagaa 29 |||||||||||||||||||| Sbjct: 4622974 tcacgctggcaggagaagaa 4622993
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 gattgctgattctgatgtga 157 |||||||||||||||||||| Sbjct: 2496737 gattgctgattctgatgtga 2496718 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,712,049 Number of Sequences: 3902068 Number of extensions: 1712049 Number of successful extensions: 88839 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88679 Number of HSP's gapped (non-prelim): 157 length of query: 220 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 198 effective length of database: 17,147,199,772 effective search space: 3395145554856 effective search space used: 3395145554856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
