| Clone Name | basd20d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1307 Score = 337 bits (170), Expect = 2e-89 Identities = 299/342 (87%) Strand = Plus / Plus Query: 26 cctgtacgacacggtgtcgaaatccaccttcgtcgctgctgatgctgatggcagtatccc 85 |||||| ||||| |||| |||||||||||||| ||||| ||||||||||| || || || Sbjct: 657 cctgtatgacactctgtcaaaatccaccttcgttgctgcagatgctgatggtagcattcc 716 Query: 86 cttcttctggggcgtcgactccgaagaccaccttgtgttctctgacgacaatgagcttct 145 |||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||| Sbjct: 717 tttcttctggggcgttgactccgagaaccaccttgtgttctctgacaatgttgaccttct 776 Query: 146 caaggcagggtgcggaaactcattcgcgccattccccaaaggctgcttctacaccacatc 205 ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || Sbjct: 777 caaggcatcctgcgggaactcgtttgcgccattccccaaaggctgcttctacaccacctc 836 Query: 206 tggagggctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtgga 265 |||||||||||||||||||||||| ||||||||||| |||||| | ||||| || || || Sbjct: 837 tggagggctgcagagcttcgagcacccgctgaacgagctgaagcctgtgccgcgggtcga 896 Query: 266 cagccaaggccagatgtgtggctccaccttcaaggtcgacagcgaggccaagaaggactc 325 |||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct: 897 cagccagggccagatgtgcggctccaactacaaggtcgacagcgaggccaagaaggactc 956 Query: 326 ggggatccctcgcgtcggtagtgccgctgattggtctaacca 367 ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct: 957 cgggatccctcgggtcggcagcgccgcagactggtccaacca 998
>dbj|AB110189.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 17FPG011 Length = 1129 Score = 337 bits (170), Expect = 2e-89 Identities = 299/342 (87%) Strand = Plus / Plus Query: 26 cctgtacgacacggtgtcgaaatccaccttcgtcgctgctgatgctgatggcagtatccc 85 |||||| ||||| |||| |||||||||||||| ||||| ||||||||||| || || || Sbjct: 476 cctgtatgacactctgtcaaaatccaccttcgttgctgcagatgctgatggtagcattcc 535 Query: 86 cttcttctggggcgtcgactccgaagaccaccttgtgttctctgacgacaatgagcttct 145 |||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||| Sbjct: 536 tttcttctggggcgttgactccgagaaccaccttgtgttctctgacaatgttgaccttct 595 Query: 146 caaggcagggtgcggaaactcattcgcgccattccccaaaggctgcttctacaccacatc 205 ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || Sbjct: 596 caaggcatcctgcgggaactcgtttgcgccattccccaaaggctgcttctacaccacctc 655 Query: 206 tggagggctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtgga 265 |||||||||||||||||||||||| ||||||||||| |||||| | ||||| || || || Sbjct: 656 tggagggctgcagagcttcgagcacccgctgaacgagctgaagcctgtgccgcgggtcga 715 Query: 266 cagccaaggccagatgtgtggctccaccttcaaggtcgacagcgaggccaagaaggactc 325 |||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct: 716 cagccagggccagatgtgcggctccaactacaaggtcgacagcgaggccaagaaggactc 775 Query: 326 ggggatccctcgcgtcggtagtgccgctgattggtctaacca 367 ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct: 776 cgggatccctcgggtcggcagcgccgcagactggtccaacca 817
>dbj|AK065730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037C05, full insert sequence Length = 1111 Score = 337 bits (170), Expect = 2e-89 Identities = 299/342 (87%) Strand = Plus / Plus Query: 26 cctgtacgacacggtgtcgaaatccaccttcgtcgctgctgatgctgatggcagtatccc 85 |||||| ||||| |||| |||||||||||||| ||||| ||||||||||| || || || Sbjct: 479 cctgtatgacactctgtcaaaatccaccttcgttgctgcagatgctgatggtagcattcc 538 Query: 86 cttcttctggggcgtcgactccgaagaccaccttgtgttctctgacgacaatgagcttct 145 |||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||| Sbjct: 539 tttcttctggggcgttgactccgagaaccaccttgtgttctctgacaatgttgaccttct 598 Query: 146 caaggcagggtgcggaaactcattcgcgccattccccaaaggctgcttctacaccacatc 205 ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || Sbjct: 599 caaggcatcctgcgggaactcgtttgcgccattccccaaaggctgcttctacaccacctc 658 Query: 206 tggagggctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtgga 265 |||||||||||||||||||||||| ||||||||||| |||||| | ||||| || || || Sbjct: 659 tggagggctgcagagcttcgagcacccgctgaacgagctgaagcctgtgccgcgggtcga 718 Query: 266 cagccaaggccagatgtgtggctccaccttcaaggtcgacagcgaggccaagaaggactc 325 |||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct: 719 cagccagggccagatgtgcggctccaactacaaggtcgacagcgaggccaagaaggactc 778 Query: 326 ggggatccctcgcgtcggtagtgccgctgattggtctaacca 367 ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct: 779 cgggatccctcgggtcggcagcgccgcagactggtccaacca 820
>dbj|AK060366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-A05, full insert sequence Length = 1394 Score = 337 bits (170), Expect = 2e-89 Identities = 299/342 (87%) Strand = Plus / Plus Query: 26 cctgtacgacacggtgtcgaaatccaccttcgtcgctgctgatgctgatggcagtatccc 85 |||||| ||||| |||| |||||||||||||| ||||| ||||||||||| || || || Sbjct: 760 cctgtatgacactctgtcaaaatccaccttcgttgctgcagatgctgatggtagcattcc 819 Query: 86 cttcttctggggcgtcgactccgaagaccaccttgtgttctctgacgacaatgagcttct 145 |||||||||||||| |||||||| |||||||||||||||||||| | ||| ||||| Sbjct: 820 tttcttctggggcgttgactccgagaaccaccttgtgttctctgacaatgttgaccttct 879 Query: 146 caaggcagggtgcggaaactcattcgcgccattccccaaaggctgcttctacaccacatc 205 ||||||| ||||| ||||| || |||||||||||||||||||||||||||||||| || Sbjct: 880 caaggcatcctgcgggaactcgtttgcgccattccccaaaggctgcttctacaccacctc 939 Query: 206 tggagggctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtgga 265 |||||||||||||||||||||||| ||||||||||| |||||| | ||||| || || || Sbjct: 940 tggagggctgcagagcttcgagcacccgctgaacgagctgaagcctgtgccgcgggtcga 999 Query: 266 cagccaaggccagatgtgtggctccaccttcaaggtcgacagcgaggccaagaaggactc 325 |||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||| Sbjct: 1000 cagccagggccagatgtgcggctccaactacaaggtcgacagcgaggccaagaaggactc 1059 Query: 326 ggggatccctcgcgtcggtagtgccgctgattggtctaacca 367 ||||||||||| ||||| || ||||| || ||||| ||||| Sbjct: 1060 cgggatccctcgggtcggcagcgccgcagactggtccaacca 1101
>gb|AY105257.1| Zea mays PCO119343 mRNA sequence Length = 1188 Score = 230 bits (116), Expect = 3e-57 Identities = 252/296 (85%), Gaps = 1/296 (0%) Strand = Plus / Plus Query: 26 cctgtacgacacggtgtcgaaatccaccttcgtcgctgctgatgctgatggcagtatccc 85 |||||| ||||| ||||||| || ||||| || |||||||| |||||||| || ||||| Sbjct: 535 cctgtatgacaccctgtcgaagtctacctttgttgctgctgacgctgatggtagcatccc 594 Query: 86 cttcttctggggcgtcgactccgaagaccaccttgtgttctctgacgacaatgagcttct 145 |||||||||||||| |||| |||| |||||||||||||||||||||| || | | || Sbjct: 595 tttcttctggggcgttgactacgaaaaccaccttgtgttctctgacgatgttgggatcct 654 Query: 146 caaggcagggtgcggaaactcattcgcgccattccccaaaggctgcttctacaccacatc 205 |||| |||| ||||| ||||| | ||| ||||| || ||||| |||||||||||||| || Sbjct: 655 caagacaggctgcggcaactcgtacgctccatttcctaaaggttgcttctacaccacctc 714 Query: 206 tggaggg-ctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtgg 264 || ||| ||||||||||||||||| ||| || |||| | ||||| ||||||||||||| Sbjct: 715 cggtggggctgcagagcttcgagcacccgttgcacgaggtcaaggcggtgccacgcgtgg 774 Query: 265 acagccaaggccagatgtgtggctccaccttcaaggtcgacagcgaggccaagaag 320 ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| Sbjct: 775 acagccaaggccagatgtgcggctccatcttcaaggtcgacagcgagagcaagaag 830
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Minus Query: 185 aggctgcttctacaccacatctggagggctgcagagcttcgagcatccgctgaacgaact 244 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || Sbjct: 30268834 aggctgcttctacaccacctctggagggctgcagagcttcgagcacccgctgaacgagct 30268775 Query: 245 gaaggccgtgccacgcgtggacagccaaggccagatgtgtggctccaccttcaaggtcga 304 |||| | ||||| || || |||||||| ||||||||||| ||||||| || ||||||||| Sbjct: 30268774 gaagcctgtgccgcgggtcgacagccagggccagatgtgcggctccaactacaaggtcga 30268715 Query: 305 cagcgaggccaagaaggactcggggatccctcgcgtcggtagtgccgctgattggtctaa 364 ||||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct: 30268714 cagcgaggccaagaaggactccgggatccctcgggtcggcagcgccgcagactggtccaa 30268655 Query: 365 cca 367 ||| Sbjct: 30268654 cca 30268652 Score = 99.6 bits (50), Expect = 7e-18 Identities = 104/122 (85%) Strand = Plus / Minus Query: 66 gatgctgatggcagtatccccttcttctggggcgtcgactccgaagaccaccttgtgttc 125 ||||||||||| || || || |||||||||||||| |||||||| |||||||||||||| Sbjct: 30269062 gatgctgatggtagcattcctttcttctggggcgttgactccgagaaccaccttgtgttc 30269003 Query: 126 tctgacgacaatgagcttctcaaggcagggtgcggaaactcattcgcgccattccccaaa 185 |||||| | ||| |||||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 30269002 tctgacaatgttgaccttctcaaggcatcctgcgggaactcgtttgcgccattccccaaa 30268943 Query: 186 gg 187 || Sbjct: 30268942 gg 30268941 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 11394135 aactgaaggccgtgccacgc 11394154
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Minus Query: 185 aggctgcttctacaccacatctggagggctgcagagcttcgagcatccgctgaacgaact 244 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || Sbjct: 60514 aggctgcttctacaccacctctggagggctgcagagcttcgagcacccgctgaacgagct 60455 Query: 245 gaaggccgtgccacgcgtggacagccaaggccagatgtgtggctccaccttcaaggtcga 304 |||| | ||||| || || |||||||| ||||||||||| ||||||| || ||||||||| Sbjct: 60454 gaagcctgtgccgcgggtcgacagccagggccagatgtgcggctccaactacaaggtcga 60395 Query: 305 cagcgaggccaagaaggactcggggatccctcgcgtcggtagtgccgctgattggtctaa 364 ||||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct: 60394 cagcgaggccaagaaggactccgggatccctcgggtcggcagcgccgcagactggtccaa 60335 Query: 365 cca 367 ||| Sbjct: 60334 cca 60332 Score = 99.6 bits (50), Expect = 7e-18 Identities = 104/122 (85%) Strand = Plus / Minus Query: 66 gatgctgatggcagtatccccttcttctggggcgtcgactccgaagaccaccttgtgttc 125 ||||||||||| || || || |||||||||||||| |||||||| |||||||||||||| Sbjct: 60742 gatgctgatggtagcattcctttcttctggggcgttgactccgagaaccaccttgtgttc 60683 Query: 126 tctgacgacaatgagcttctcaaggcagggtgcggaaactcattcgcgccattccccaaa 185 |||||| | ||| |||||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 60682 tctgacaatgttgaccttctcaaggcatcctgcgggaactcgtttgcgccattccccaaa 60623 Query: 186 gg 187 || Sbjct: 60622 gg 60621
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 212 bits (107), Expect = 7e-52 Identities = 164/183 (89%) Strand = Plus / Minus Query: 185 aggctgcttctacaccacatctggagggctgcagagcttcgagcatccgctgaacgaact 244 |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || Sbjct: 30360256 aggctgcttctacaccacctctggagggctgcagagcttcgagcacccgctgaacgagct 30360197 Query: 245 gaaggccgtgccacgcgtggacagccaaggccagatgtgtggctccaccttcaaggtcga 304 |||| | ||||| || || |||||||| ||||||||||| ||||||| || ||||||||| Sbjct: 30360196 gaagcctgtgccgcgggtcgacagccagggccagatgtgcggctccaactacaaggtcga 30360137 Query: 305 cagcgaggccaagaaggactcggggatccctcgcgtcggtagtgccgctgattggtctaa 364 ||||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| || Sbjct: 30360136 cagcgaggccaagaaggactccgggatccctcgggtcggcagcgccgcagactggtccaa 30360077 Query: 365 cca 367 ||| Sbjct: 30360076 cca 30360074 Score = 99.6 bits (50), Expect = 7e-18 Identities = 104/122 (85%) Strand = Plus / Minus Query: 66 gatgctgatggcagtatccccttcttctggggcgtcgactccgaagaccaccttgtgttc 125 ||||||||||| || || || |||||||||||||| |||||||| |||||||||||||| Sbjct: 30360484 gatgctgatggtagcattcctttcttctggggcgttgactccgagaaccaccttgtgttc 30360425 Query: 126 tctgacgacaatgagcttctcaaggcagggtgcggaaactcattcgcgccattccccaaa 185 |||||| | ||| |||||||||||| ||||| ||||| || ||||||||||||||| Sbjct: 30360424 tctgacaatgttgaccttctcaaggcatcctgcgggaactcgtttgcgccattccccaaa 30360365 Query: 186 gg 187 || Sbjct: 30360364 gg 30360363 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 11390898 aactgaaggccgtgccacgc 11390917
>gb|BT019109.1| Zea mays clone Contig714.F mRNA sequence Length = 486 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 207 ggagggctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggac 266 |||||||| ||||||||||||| || ||||| || |||||| |||| ||||| ||| Sbjct: 15 ggagggctcaagagcttcgagcaccccatgaacaggctcaaggccatgccgcgcgtcgac 74 Query: 267 agccaaggccagatgtgtggctccaccttcaaggtcgaca 306 ||| ||||| ||||| ||| |||||||||||||||||| Sbjct: 75 agcgaaggcgccatgtgcggcgccaccttcaaggtcgaca 114
>gb|BT024180.1| Zea mays clone EL01N0417H11 mRNA sequence Length = 1180 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 207 ggagggctgcagagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggac 266 |||||||| ||||||||||||| || ||||| || |||||| |||| ||||| ||| Sbjct: 704 ggagggctcaagagcttcgagcaccccatgaacaggctcaaggccatgccgcgcgtcgac 763 Query: 267 agccaaggccagatgtgtggctccaccttcaaggtcgaca 306 ||| ||||| ||||| ||| |||||||||||||||||| Sbjct: 764 agcgaaggcgccatgtgcggcgccaccttcaaggtcgaca 803
>emb|AL606456.2|OSJN00017 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0017I01, complete sequence Length = 133331 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 35584 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 35525 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 35524 tcatgtgcggcgccaccttcaaggtcgaca 35495
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 34730022 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 34729963 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 34729962 tcatgtgcggcgccaccttcaaggtcgaca 34729933
>dbj|AK121152.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J16, full insert sequence Length = 1418 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 901 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 960 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 961 tcatgtgcggcgccaccttcaaggtcgaca 990
>dbj|AK120508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123H02, full insert sequence Length = 644 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 135 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 194 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 195 tcatgtgcggcgccaccttcaaggtcgaca 224
>dbj|AK119666.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D04, full insert sequence Length = 1278 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 761 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 820 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 821 tcatgtgcggcgccaccttcaaggtcgaca 850
>dbj|AK106133.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-G01, full insert sequence Length = 1279 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 766 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 825 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 826 tcatgtgcggcgccaccttcaaggtcgaca 855
>dbj|AK104376.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G05, full insert sequence Length = 1279 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 766 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 825 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 826 tcatgtgcggcgccaccttcaaggtcgaca 855
>dbj|AK104249.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G04, full insert sequence Length = 1283 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 766 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 825 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 826 tcatgtgcggcgccaccttcaaggtcgaca 855
>dbj|AK099975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E09, full insert sequence Length = 1281 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 767 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 826 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 827 tcatgtgcggcgccaccttcaaggtcgaca 856
>dbj|AK099653.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013065M12, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 767 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 826 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 827 tcatgtgcggcgccaccttcaaggtcgaca 856
>dbj|AK099368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052O07, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 767 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 826 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 827 tcatgtgcggcgccaccttcaaggtcgaca 856
>dbj|AK099087.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023006D09, full insert sequence Length = 1275 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 762 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 821 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 822 tcatgtgcggcgccaccttcaaggtcgaca 851
>dbj|AK099009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116G09, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 767 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 826 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 827 tcatgtgcggcgccaccttcaaggtcgaca 856
>dbj|AK068608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157B10, full insert sequence Length = 1500 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 978 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 1037 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 1038 tcatgtgcggcgccaccttcaaggtcgaca 1067
>dbj|AK065314.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O24, full insert sequence Length = 1284 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Plus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 767 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 826 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 827 tcatgtgcggcgccaccttcaaggtcgaca 856
>emb|AL732353.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0801D08, complete sequence Length = 103264 Score = 52.0 bits (26), Expect = 0.002 Identities = 74/90 (82%) Strand = Plus / Minus Query: 217 agagcttcgagcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcc 276 ||||||||||||| ||| ||||| |||||||| |||| || ||||||||| | ||| Sbjct: 72548 agagcttcgagcacccgatgaaccggctgaaggcgatgccgcgggtggacagcgagggcg 72489 Query: 277 agatgtgtggctccaccttcaaggtcgaca 306 ||||| ||| |||||||||||||||||| Sbjct: 72488 tcatgtgcggcgccaccttcaaggtcgaca 72459
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 31 acgacacggtgtcgaaatccaccttc 56 ||||||||||||||| |||||||||| Sbjct: 38451 acgacacggtgtcgagatccaccttc 38426
>gb|AY104934.1| Zea mays PCO071754 mRNA sequence Length = 1058 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 87 ttcttctggggcgtcgactccgaagaccaccttg 120 |||||||||||||| |||| |||| ||||||||| Sbjct: 72 ttcttctggggcgttgactacgaaaaccaccttg 39
>gb|BT018507.1| Zea mays clone EL01N0428E04.d mRNA sequence Length = 1088 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 177 ttccccaaaggctgcttctacaccacatctggagggctgcagagcttcgagca 229 ||||||||||||| ||||| ||| || || ||||||||| ||||| |||||| Sbjct: 666 ttccccaaaggcttcttcttcacgacgtccggagggctgaggagctacgagca 718
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 tcgtcgctgctgatgctgatg 75 ||||||||||||||||||||| Sbjct: 18944503 tcgtcgctgctgatgctgatg 18944483 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 17858124 aactgaaggccgtgccacgc 17858105
>gb|AY107997.1| Zea mays PCO137552 mRNA sequence Length = 867 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 177 ttccccaaaggctgcttctacaccacatctggagggctgcagagcttcgagca 229 ||||||||||||| ||||| ||| || || ||||||||| ||||| |||||| Sbjct: 507 ttccccaaaggcttcttcttcacgacgtccggagggctgaggagctacgagca 559
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 tcgtcgctgctgatgctgatg 75 ||||||||||||||||||||| Sbjct: 18870730 tcgtcgctgctgatgctgatg 18870710 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 17784493 aactgaaggccgtgccacgc 17784474
>emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 153064 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tcgtcgctgctgatgctgatg 75 ||||||||||||||||||||| Sbjct: 25876 tcgtcgctgctgatgctgatg 25896
>emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151203 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 tcgtcgctgctgatgctgatg 75 ||||||||||||||||||||| Sbjct: 40620 tcgtcgctgctgatgctgatg 40600
>gb|AF001530.1|AF001530 Musa acuminata ripening-associated protein mRNA, partial cds Length = 376 Score = 42.1 bits (21), Expect = 1.5 Identities = 89/112 (79%) Strand = Plus / Plus Query: 166 cattcgcgccattccccaaaggctgcttctacaccacatctggagggctgcagagcttcg 225 |||| ||||| || |||||||| ||||||| || ||||| || || |||| || || | Sbjct: 1 catttgcgccctttcccaaaggttgcttctttacgacatccgggggattgcanagttttg 60 Query: 226 agcatccgctgaacgaactgaaggccgtgccacgcgtggacagccaaggcca 277 ||||||| |||||||| || || || ||||| | || |||||||||||||| Sbjct: 61 agcatcccctgaacgagctcaaagcgatgccaagggtcgacagccaaggcca 112
>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence Length = 226006 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 acagccaaggccagatgtgt 284 |||||||||||||||||||| Sbjct: 120439 acagccaaggccagatgtgt 120458
>ref|XM_362257.1| Magnaporthe grisea 70-15 hypothetical protein (MG04702.4) partial cds Length = 771 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 cttctggggcgtcgactccg 108 |||||||||||||||||||| Sbjct: 397 cttctggggcgtcgactccg 378
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 19895547 aactgaaggccgtgccacgc 19895566
>gb|AC009364.9| Homo sapiens chromosome 7 clone RP11-348A15, complete sequence Length = 151153 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 accacatctggagggctgca 217 |||||||||||||||||||| Sbjct: 16076 accacatctggagggctgca 16057
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 102432 aactgaaggccgtgccacgc 102451
>gb|AC018643.3|AC018643 Human Chromosome 7 clone RP11-297N5, complete sequence Length = 198470 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 accacatctggagggctgca 217 |||||||||||||||||||| Sbjct: 150177 accacatctggagggctgca 150158
>dbj|AP003516.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0047D12 Length = 145981 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 118505 aactgaaggccgtgccacgc 118524
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 140382 aactgaaggccgtgccacgc 140401
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142246 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 aactgaaggccgtgccacgc 260 |||||||||||||||||||| Sbjct: 77322 aactgaaggccgtgccacgc 77303
>gb|AF051092.1|AF051092 Xanthomonas campestris restriction endonuclease R.XbaI (xbaIR) and DNA modification methyltransferase M.XbaI (xbaIM) genes, complete cds; and transposase gene, partial cds Length = 3141 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 cctgtacgacacggtgtcga 45 |||||||||||||||||||| Sbjct: 2974 cctgtacgacacggtgtcga 2993 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,860,432 Number of Sequences: 3902068 Number of extensions: 2860432 Number of successful extensions: 52193 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52021 Number of HSP's gapped (non-prelim): 168 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)