ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd20c23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
2dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
3dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
4dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 2e-61
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 168 9e-39
6dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic D... 168 9e-39
7ref|XM_477429.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
8emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3... 60 6e-06
9dbj|AK067254.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
10emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ub... 60 6e-06
11gb|AY105141.1| Zea mays PCO120313 mRNA sequence 52 0.002
12ref|NM_197199.1| Oryza sativa (japonica cultivar-group) unknown ... 46 0.094
13gb|AY639952.1| Avicennia marina putative protein (Am900550) mRNA... 46 0.094
14gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, compl... 44 0.37
15gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen... 42 1.5
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 i... 42 1.5
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
19emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chr... 40 5.8
20ref|XM_967583.1| PREDICTED: Tribolium castaneum similar to CG136... 40 5.8
21dbj|AK171019.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 5.8
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
23gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 ... 40 5.8
24gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 f... 40 5.8
25gb|AC007386.3| Homo sapiens BAC clone RP11-359K10 from 2, comple... 40 5.8
26gb|AC001231.3| Homo sapiens chromosome 17, clone CTB-44J6, compl... 40 5.8
27gb|AY147930.1| Expression vector pFerX8, complete sequence 40 5.8
28gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, co... 40 5.8
29dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
30dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
31gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 ... 40 5.8
32emb|AL844533.11| Mouse DNA sequence from clone RP23-299K8 on chr... 40 5.8
33emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chrom... 40 5.8 
>dbj|AK106188.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D10, full
           insert sequence
          Length = 1173

 Score =  244 bits (123), Expect = 2e-61
 Identities = 180/199 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 288
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 217 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 276

                                                                       
Query: 289 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 348
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 277 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 336

                                                                       
Query: 349 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 408
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 337 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 396

                              
Query: 409 acaccctccccagctacct 427
           | |||||||| || |||||
Sbjct: 397 ataccctccctagttacct 415
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>dbj|AK104453.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H10, full
           insert sequence
          Length = 1290

 Score =  244 bits (123), Expect = 2e-61
 Identities = 180/199 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 288
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 217 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 276

                                                                       
Query: 289 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 348
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 277 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 336

                                                                       
Query: 349 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 408
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 337 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 396

                              
Query: 409 acaccctccccagctacct 427
           | |||||||| || |||||
Sbjct: 397 ataccctccctagttacct 415
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>dbj|AK099185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K15, full
           insert sequence
          Length = 1291

 Score =  244 bits (123), Expect = 2e-61
 Identities = 180/199 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 288
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 218 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 277

                                                                       
Query: 289 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 348
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 278 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 337

                                                                       
Query: 349 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 408
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 338 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 397

                              
Query: 409 acaccctccccagctacct 427
           | |||||||| || |||||
Sbjct: 398 ataccctccctagttacct 416
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>dbj|AK060020.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-G11, full
           insert sequence
          Length = 1296

 Score =  244 bits (123), Expect = 2e-61
 Identities = 180/199 (90%)
 Strand = Plus / Plus

                                                                       
Query: 229 tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctgg 288
           |||||||||||||||| |||||||| || ||||| ||||||||||| |||||||||||||
Sbjct: 217 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctgg 276

                                                                       
Query: 289 cgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacagct 348
           |||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||||
Sbjct: 277 cgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacagct 336

                                                                       
Query: 349 ccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctcct 408
           ||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |
Sbjct: 337 ccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttcat 396

                              
Query: 409 acaccctccccagctacct 427
           | |||||||| || |||||
Sbjct: 397 ataccctccctagttacct 415
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                            
Query: 287      ggcgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacag 346
                |||||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||
Sbjct: 39422812 ggcgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacag 39422871

                                                                            
Query: 347      ctccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctc 406
                ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 39422872 ctccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttc 39422931

                                     
Query: 407      ctacaccctccccagctacct 427
                 || |||||||| || |||||
Sbjct: 39422932 atataccctccctagttacct 39422952



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                           
Query: 229      tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctg 287
                |||||||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 39422544 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctg 39422602
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>dbj|AP006839.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             fosmid clone:OSJNOa108M02
          Length = 38208

 Score =  168 bits (85), Expect = 9e-39
 Identities = 127/141 (90%)
 Strand = Plus / Plus

                                                                         
Query: 287   ggcgcatgctatccacagggcctatggcggcacctgcgtgcagatgaggctgtcctacag 346
             |||||||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||
Sbjct: 33336 ggcgcatgctatacacagggcctatgggggtgcctgtgtgcagatgaggctgtcttacag 33395

                                                                         
Query: 347   ctccatggctccaatcatcctcaaccttatccagtggatggactgcagctgctccctctc 406
             ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||
Sbjct: 33396 ctccatggctccaatcatccttaacctcatccagtggatggattgcagctgctccctttc 33455

                                  
Query: 407   ctacaccctccccagctacct 427
              || |||||||| || |||||
Sbjct: 33456 atataccctccctagttacct 33476



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 54/59 (91%)
 Strand = Plus / Plus

                                                                        
Query: 229   tgtccctcaggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctg 287
             |||||||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 33068 tgtccctcaggggctctctcaaggcgcttgaagctgatatccaccatgccaacaccctg 33126
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>ref|XM_477429.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1107

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 303
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 208 ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 267

                                                         
Query: 304 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 349
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 268 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 313
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>emb|AJ620335.1| Oryza sativa (indica cultivar-group) mRNA for E3 ubiquitin ligase
           (ubl gene)
          Length = 762

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 303
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 47  ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 106

                                                         
Query: 304 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 349
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 107 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 152
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>dbj|AK067254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099E09, full
           insert sequence
          Length = 1107

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 303
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 208 ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 267

                                                         
Query: 304 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 349
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 268 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 313
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>emb|AJ867287.1| Oryza sativa (indica cultivar-group) mRNA for ubiquitin ligase E3
           (ubl gene)
          Length = 762

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 244 ccctcaaggccctcgaagccgatatccaccacgccaacaccctggcgcatgctatccaca 303
           |||||||||| || || ||||| |||||||| ||||||||| ||||  |||||||||| |
Sbjct: 47  ccctcaaggcactggaggccgacatccaccatgccaacaccatggctaatgctatccaga 106

                                                         
Query: 304 gggcctatggcggcacctgcgtgcagatgaggctgtcctacagctc 349
           ||  |||||| ||  | || |||||||||||| |||| | ||||||
Sbjct: 107 ggaactatggtggagcatgtgtgcagatgaggttgtcgtgcagctc 152
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>gb|AY105141.1| Zea mays PCO120313 mRNA sequence
          Length = 1248

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 236 caggggctccctcaaggccctcgaagccgatatccaccacgccaacaccctggc 289
           ||||| |||| ||||||  |||||||| || ||||| |||||||||||||||||
Sbjct: 189 cagggactccatcaaggtgctcgaagctgacatccagcacgccaacaccctggc 242
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>ref|NM_197199.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0078O01.6), mRNA
          Length = 1073

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 255 ctcgaagccgatatccaccacgccaacaccctggc 289
           |||||||| || ||||| |||||||||||||||||
Sbjct: 34  ctcgaagctgacatccagcacgccaacaccctggc 68
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>gb|AY639952.1| Avicennia marina putative protein (Am900550) mRNA, complete cds
          Length = 964

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 255 ctcgaagccgatatccaccacgccaacaccctggc 289
           |||||||||||||| || || ||||||||||||||
Sbjct: 173 ctcgaagccgatattcaacatgccaacaccctggc 207
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>gb|AC138553.3| Ornithorhynchus anatinus clone OA_Bb-524H4, complete sequence
          Length = 144677

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 400    ccctctcctacaccctccccag 421
              ||||||||||||||||||||||
Sbjct: 100888 ccctctcctacaccctccccag 100867
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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 255   ctcgaagccgatatccaccacgccaacaccctg 287
             |||||||| || ||||| |||||||||||||||
Sbjct: 65948 ctcgaagctgacatccagcacgccaacaccctg 65980
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 255      ctcgaagccgatatccaccacgccaacaccctg 287
                |||||||| || ||||| |||||||||||||||
Sbjct: 18562537 ctcgaagctgacatccagcacgccaacaccctg 18562569
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>emb|AL954687.17| Zebrafish DNA sequence from clone CH211-202B2 in linkage group 19,
              complete sequence
          Length = 191582

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     cacccacaccccaacagcaca 50
              |||||||||||||||||||||
Sbjct: 171758 cacccacaccccaacagcaca 171778
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 255      ctcgaagccgatatccaccacgccaacaccctg 287
                |||||||| || ||||| |||||||||||||||
Sbjct: 18572990 ctcgaagctgacatccagcacgccaacaccctg 18573022
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>emb|AL732327.6| Human DNA sequence from clone RP11-387P24 on chromosome X Contains
            part of the SH3KBP1 gene for SH3-domain kinase binding
            protein 1 (CIN85), complete sequence
          Length = 190325

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  atggactgcagctgctccct 403
            ||||||||||||||||||||
Sbjct: 6821 atggactgcagctgctccct 6840
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>ref|XM_967583.1| PREDICTED: Tribolium castaneum similar to CG13676-PA (LOC661426),
            mRNA
          Length = 2632

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 124  ctccccctcgcccaagtctc 143
            ||||||||||||||||||||
Sbjct: 2051 ctccccctcgcccaagtctc 2070
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>dbj|AK171019.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630218K08
            product:tripartite motif protein 26, full insert sequence
          Length = 4337

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  tgtccctcaggggctccctc 248
            ||||||||||||||||||||
Sbjct: 1978 tgtccctcaggggctccctc 1997
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 208      tgcttcacggcggccggccg 227
                ||||||||||||||||||||
Sbjct: 21072458 tgcttcacggcggccggccg 21072439
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>gb|AF532115.1| Mus musculus strain 129/SvJ BAC clone citb553n23 from the MHC region,
             complete sequence
          Length = 161729

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tgtccctcaggggctccctc 248
             ||||||||||||||||||||
Sbjct: 93986 tgtccctcaggggctccctc 94005
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>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region,
             complete sequence
          Length = 172199

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tgtccctcaggggctccctc 248
             ||||||||||||||||||||
Sbjct: 21294 tgtccctcaggggctccctc 21313
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>gb|AC007386.3| Homo sapiens BAC clone RP11-359K10 from 2, complete sequence
          Length = 176742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    ccctctcctacaccctcccc 419
              ||||||||||||||||||||
Sbjct: 101110 ccctctcctacaccctcccc 101091
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>gb|AC001231.3| Homo sapiens chromosome 17, clone CTB-44J6, complete sequence
          Length = 134457

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 215  cggcggccggccgctgtccc 234
            ||||||||||||||||||||
Sbjct: 2149 cggcggccggccgctgtccc 2130
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>gb|AY147930.1| Expression vector pFerX8, complete sequence
          Length = 17787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   caggggctccctcaaggccc 255
             ||||||||||||||||||||
Sbjct: 12847 caggggctccctcaaggccc 12866
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>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence
          Length = 188574

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 215  cggcggccggccgctgtccc 234
            ||||||||||||||||||||
Sbjct: 4550 cggcggccggccgctgtccc 4569
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>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0431A03
          Length = 149500

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 208    tgcttcacggcggccggccg 227
              ||||||||||||||||||||
Sbjct: 138633 tgcttcacggcggccggccg 138614
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0413H11
          Length = 147655

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   tgcttcacggcggccggccg 227
             ||||||||||||||||||||
Sbjct: 43668 tgcttcacggcggccggccg 43649
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>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete
             sequence
          Length = 158414

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tgtccctcaggggctccctc 248
             ||||||||||||||||||||
Sbjct: 21277 tgtccctcaggggctccctc 21296
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>emb|AL844533.11| Mouse DNA sequence from clone RP23-299K8 on chromosome 2, complete
              sequence
          Length = 183820

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 401    cctctcctacaccctcccca 420
              ||||||||||||||||||||
Sbjct: 145408 cctctcctacaccctcccca 145389
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>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete
              sequence
          Length = 202624

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    tgtccctcaggggctccctc 248
              ||||||||||||||||||||
Sbjct: 164325 tgtccctcaggggctccctc 164306


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,099,219
Number of Sequences: 3902068
Number of extensions: 3099219
Number of successful extensions: 68659
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 68527
Number of HSP's gapped (non-prelim): 134
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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