ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd20b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POF13_SCHPO (O94334) F-box protein pof13 32 1.7
2YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region 31 2.9
3P3P_LACLC (P15292) PIII-type proteinase precursor (EC 3.4.21.96)... 29 8.4

>POF13_SCHPO (O94334) F-box protein pof13|
          Length = 396

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 317 TLTPVIFGSYLVFRVCLDLVPLAXPAPKQCFTPRCPVNCC 198
           TLT       ++F+  LD +P     P +C   RCP+N C
Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262



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>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region|
          Length = 154

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 130 VVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGXASG 258
           V+ +G +PL PR  W++   + AQQLT    ++   G+G  +G
Sbjct: 82  VLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123



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>P3P_LACLC (P15292) PIII-type proteinase precursor (EC 3.4.21.96) (Lactocepin)|
            (Cell wall-associated serine proteinase)
          Length = 1902

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 271  QTLNTRYDPKITGVKVGQ*DDGX*ASSSRGKQPGSPAKAPK*PLSDKGGGGAK 429
            Q+L T+    +   K     DG   +S +G   G+PA AP     DKG  G++
Sbjct: 1779 QSLKTKVAAAVEAAKTVGKGDGTTGTSDKGGGQGTPAPAPGDTGKDKGDEGSQ 1831


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,048,850
Number of Sequences: 219361
Number of extensions: 1525290
Number of successful extensions: 3315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3314
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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