| Clone Name | basd20a03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY123422.1| Triticum aestivum putative Rieske Fe-S precursor protein mRNA, complete cds Length = 866 Score = 763 bits (385), Expect = 0.0 Identities = 439/456 (96%), Gaps = 1/456 (0%) Strand = Plus / Plus Query: 10 tgctagctcgctcgctcgatcgtcctctccgccctgtagcagccagctcaccatggcctc 69 |||| |||||||||||||||||||||| |||||||| |||||||||| |||||||||||| Sbjct: 1 tgctcgctcgctcgctcgatcgtcctccccgccctgcagcagccagc-caccatggcctc 59 Query: 70 caccgngctctccaccgcctccaaccccacccagctctgccgaacccgtgcgagctcgct 129 |||| ||||||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct: 60 taccgcgctctccaccgcctccaaccctacccagctctgccggacccgtgcaagctcgct 119 Query: 130 atgcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgaggaacatcacatg 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 120 gtgcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgaggaacatcacctg 179 Query: 190 catggccggcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaa 249 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 180 catggccggcagcatctccgcggaccgcgtgccggacatgagcaagagggagctgatgaa 239 Query: 250 cctcctgctgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctc 309 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 cctgctcctgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctc 299 Query: 310 cttcctcgtcccggccggctccgggagcaacgccggaggggtcgccgccaaggacaagct 369 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 cttcctcgtccccgccggctccgggagcaacgccggaggggtcgccgccaaggacaagct 359 Query: 370 cggcaacgacatcctcgtcgaggattggctcaagacgcacggccccaacgaccgcacgct 429 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 360 cggcaacgacatcctcgtcgaggactggctcaagacgcacggccccaacgaccgcacgct 419 Query: 430 cgcccaggggctcaagggtgatcctacctaccttgt 465 ||||||||||||||||||||||||||||||||||| Sbjct: 420 ggcccaggggctcaagggtgatcctacctaccttgt 455
>dbj|AK071634.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100K03, full insert sequence Length = 1082 Score = 256 bits (129), Expect = 6e-65 Identities = 222/253 (87%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| | || |||||||||||||||||| ||||| | |||||||||||||||| | Sbjct: 199 gcagcatcccggccgaccgcgtcccggacatgggcaagcgccagctgatgaacctcctcc 258 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 259 tgctcggcgccatctcgctccccaccgtcggcatgctcgtcccctacggcgccttcttca 318 Query: 318 tcccggccggctccgggagcaacgccggaggggtcgccgccaaggacaagctcggcaacg 377 |||| ||||| ||||||| | || ||| ||| | ||||||||||||||||||||||| Sbjct: 319 tccccgccgggtccgggaacgccggcggcgggcaggtcgccaaggacaagctcggcaacg 378 Query: 378 acatcctcgtcgaggattggctcaagacgcacggccccaacgaccgcacgctcgcccagg 437 || | |||| |||||| ||||||||||| |||||||||||||||||||| ||| |||||| Sbjct: 379 acgtgctcgccgaggagtggctcaagacacacggccccaacgaccgcaccctcacccagg 438 Query: 438 ggctcaagggtga 450 ||||||||||||| Sbjct: 439 ggctcaagggtga 451 Score = 109 bits (55), Expect = 8e-21 Identities = 104/120 (86%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 60 ccatggcctccaccgngctctccaccgcctccaaccccacccagctctgccgaacccgtg 119 ||||||||||||||| ||||||||||||||||||||| || ||||| ||| | | || | Sbjct: 52 ccatggcctccaccgcgctctccaccgcctccaaccctactcagctgtgcaggtctcgcg 111 Query: 120 cgagctcgctatgcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 179 | |||||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 112 c---ctcgctgggcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 168
>gb|AF093631.1|AF093631 Oryza sativa Rieske Fe-S precursor protein (RISP) mRNA, complete cds Length = 919 Score = 256 bits (129), Expect = 6e-65 Identities = 222/253 (87%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| | || |||||||||||||||||| ||||| | |||||||||||||||| | Sbjct: 187 gcagcatcccggccgaccgcgtcccggacatgggcaagcgccagctgatgaacctcctcc 246 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 247 tgctcggcgccatctcgctccccaccgtcggcatgctcgtcccctacggcgccttcttca 306 Query: 318 tcccggccggctccgggagcaacgccggaggggtcgccgccaaggacaagctcggcaacg 377 |||| ||||| ||||||| | || ||| ||| | ||||||||||||||||||||||| Sbjct: 307 tccccgccgggtccgggaacgccggcggcgggcaggtcgccaaggacaagctcggcaacg 366 Query: 378 acatcctcgtcgaggattggctcaagacgcacggccccaacgaccgcacgctcgcccagg 437 || | |||| |||||| ||||||||||| |||||||||||||||||||| ||| |||||| Sbjct: 367 acgtgctcgccgaggagtggctcaagacacacggccccaacgaccgcaccctcacccagg 426 Query: 438 ggctcaagggtga 450 ||||||||||||| Sbjct: 427 ggctcaagggtga 439 Score = 109 bits (55), Expect = 8e-21 Identities = 104/120 (86%), Gaps = 3/120 (2%) Strand = Plus / Plus Query: 60 ccatggcctccaccgngctctccaccgcctccaaccccacccagctctgccgaacccgtg 119 ||||||||||||||| ||||||||||||||||||||| || ||||| ||| | | || | Sbjct: 40 ccatggcctccaccgcgctctccaccgcctccaaccctactcagctgtgcaggtctcgcg 99 Query: 120 cgagctcgctatgcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 179 | |||||| |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 100 c---ctcgctgggcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 156
>gb|AY104934.1| Zea mays PCO071754 mRNA sequence Length = 1058 Score = 224 bits (113), Expect = 2e-55 Identities = 218/253 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 ||||||||||||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 277 gcagcatctccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 336 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||| | |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 337 tcctcggcgccatctcgttgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 396 Query: 318 tcccggccggctccgggagcaacgccggaggggtcgccgccaaggacaagctcggcaacg 377 |||| ||||||||||||| | || ||| ||| | ||||||||||||||| ||||||| Sbjct: 397 tccctgccggctccgggaacgccggcggcgggacctacgccaaggacaagctgggcaacg 456 Query: 378 acatcctcgtcgaggattggctcaagacgcacggccccaacgaccgcacgctcgcccagg 437 ||||| || ||||| |||||||| |||||||| |||||||||||||||||||| |||| Sbjct: 457 acatcacggtggaggagtggctcaacacgcacggtcccaacgaccgcacgctcgcgcagg 516 Query: 438 ggctcaagggtga 450 ||||||||||||| Sbjct: 517 ggctcaagggtga 529 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 76 gctctccaccgcctccaaccccacccagctct 107 ||||||||||||| |||| ||||||||||||| Sbjct: 149 gctctccaccgccgccaatcccacccagctct 180
>gb|BT016255.1| Zea mays clone Contig88 mRNA sequence Length = 998 Score = 208 bits (105), Expect = 1e-50 Identities = 216/253 (85%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 ||||||||||||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 218 gcagcatctccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 277 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||| | |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 278 tcctcggcgccatctcgttgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 337 Query: 318 tcccggccggctccgggagcaacgccggaggggtcgccgccaaggacaagctcggcaacg 377 |||| ||||||||||||| | || ||| ||| | ||||||||||||||| ||||||| Sbjct: 338 tccctgccggctccgggaacgccggcggcgggacctacgccaaggacaagctgggcaacg 397 Query: 378 acatcctcgtcgaggattggctcaagacgcacggccccaacgaccgcacgctcgcccagg 437 ||||| || |||| |||||||| |||||||| |||||||| ||||||||||| |||| Sbjct: 398 acatcacggtggaggcgtggctcaacacgcacggtcccaacgatcgcacgctcgcgcagg 457 Query: 438 ggctcaagggtga 450 ||||||||||||| Sbjct: 458 ggctcaagggtga 470 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 76 gctctccaccgcctccaaccccacccagctct 107 ||||||||||||| |||| ||||||||||||| Sbjct: 90 gctctccaccgccgccaatcccacccagctct 121
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 147 bits (74), Expect = 4e-32 Identities = 116/130 (89%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| | || |||||||||||||||||| ||||| | |||||||||||||||| | Sbjct: 22132041 gcagcatcccggccgaccgcgtcccggacatgggcaagcgccagctgatgaacctcctcc 22132100 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 22132101 tgctcggcgccatctcgctccccaccgtcggcatgctcgtcccctacggcgccttcttca 22132160 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 22132161 tccccgccgg 22132170 Score = 127 bits (64), Expect = 3e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||||||||||||| | |||| |||||| ||||||||||| |||||||| Sbjct: 22132295 cgccaaggacaagctcggcaacgacgtgctcgccgaggagtggctcaagacacacggccc 22132354 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 |||||||||||| ||| ||||||||||||||| Sbjct: 22132355 caacgaccgcaccctcacccaggggctcaagg 22132386 Score = 79.8 bits (40), Expect = 7e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 132 gcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 179 |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 22131963 gcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 22132010 Score = 69.9 bits (35), Expect = 7e-09 Identities = 46/50 (92%) Strand = Plus / Plus Query: 60 ccatggcctccaccgngctctccaccgcctccaaccccacccagctctgc 109 ||||||||||||||| ||||||||||||||||||||| || ||| ||||| Sbjct: 22130878 ccatggcctccaccgcgctctccaccgcctccaaccctactcaggtctgc 22130927
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 147 bits (74), Expect = 4e-32 Identities = 116/130 (89%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| | || |||||||||||||||||| ||||| | |||||||||||||||| | Sbjct: 85697 gcagcatcccggccgaccgcgtcccggacatgggcaagcgccagctgatgaacctcctcc 85756 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct: 85757 tgctcggcgccatctcgctccccaccgtcggcatgctcgtcccctacggcgccttcttca 85816 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 85817 tccccgccgg 85826 Score = 127 bits (64), Expect = 3e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||||||||||||| | |||| |||||| ||||||||||| |||||||| Sbjct: 85951 cgccaaggacaagctcggcaacgacgtgctcgccgaggagtggctcaagacacacggccc 86010 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 |||||||||||| ||| ||||||||||||||| Sbjct: 86011 caacgaccgcaccctcacccaggggctcaagg 86042 Score = 79.8 bits (40), Expect = 7e-12 Identities = 46/48 (95%) Strand = Plus / Plus Query: 132 gcaagcccgtcaagggcctgggcttcggccgggagcgcatcccgagga 179 |||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 85619 gcaagcccgtcaagggcctgggcttcggccgggagcgcgtgccgagga 85666 Score = 69.9 bits (35), Expect = 7e-09 Identities = 46/50 (92%) Strand = Plus / Plus Query: 60 ccatggcctccaccgngctctccaccgcctccaaccccacccagctctgc 109 ||||||||||||||| ||||||||||||||||||||| || ||| ||||| Sbjct: 84534 ccatggcctccaccgcgctctccaccgcctccaaccctactcaggtctgc 84583
>gb|DQ427777.1| Sorghum propinquum locus HHU30 genomic sequence Length = 742 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 191 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 250 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 251 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 310 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 311 tccccgccgg 320 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 433 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 492 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 493 caacgaccgcacgctggcgcaggggctcaagg 524
>gb|DQ427776.1| Sorghum bicolor voucher PI585454 locus HHU30 genomic sequence Length = 728 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 425 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 484 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 485 caacgaccgcacgctggcgcaggggctcaagg 516
>gb|DQ427775.1| Sorghum bicolor voucher PI267539 locus HHU30 genomic sequence Length = 731 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427774.1| Sorghum bicolor voucher PI267408 locus HHU30 genomic sequence Length = 731 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427773.1| Sorghum bicolor voucher PI221607 locus HHU30 genomic sequence Length = 725 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427772.1| Sorghum bicolor voucher PI152702 locus HHU30 genomic sequence Length = 731 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427771.1| Sorghum bicolor voucher NSL92371 locus HHU30 genomic sequence Length = 731 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427770.1| Sorghum bicolor voucher NSL87902 locus HHU30 genomic sequence Length = 728 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 425 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 484 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 485 caacgaccgcacgctggcgcaggggctcaagg 516
>gb|DQ427769.1| Sorghum bicolor voucher NSL87666 locus HHU30 genomic sequence Length = 733 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 430 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 489 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 490 caacgaccgcacgctggcgcaggggctcaagg 521
>gb|DQ427768.1| Sorghum bicolor voucher NSL77217 locus HHU30 genomic sequence Length = 731 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427767.1| Sorghum bicolor voucher NSL77034 locus HHU30 genomic sequence Length = 723 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 181 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 240 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 241 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 300 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 301 tccccgccgg 310 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 426 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 485 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 486 caacgaccgcacgctggcgcaggggctcaagg 517
>gb|DQ427766.1| Sorghum bicolor voucher NSL56174 locus HHU30 genomic sequence Length = 723 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 181 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 240 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 241 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 300 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 301 tccccgccgg 310 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 426 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 485 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 486 caacgaccgcacgctggcgcaggggctcaagg 517
>gb|DQ427765.1| Sorghum bicolor voucher NSL56003 locus HHU30 genomic sequence Length = 723 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 181 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 240 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 241 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 300 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 301 tccccgccgg 310 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 426 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 485 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 486 caacgaccgcacgctggcgcaggggctcaagg 517
>gb|DQ427764.1| Sorghum bicolor voucher NSL55243 locus HHU30 genomic sequence Length = 723 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 181 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 240 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 241 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 300 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 301 tccccgccgg 310 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 426 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 485 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 486 caacgaccgcacgctggcgcaggggctcaagg 517
>gb|DQ427763.1| Sorghum bicolor voucher NSL51365 locus HHU30 genomic sequence Length = 723 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 181 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 240 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 241 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 300 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 301 tccccgccgg 310 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 426 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 485 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 486 caacgaccgcacgctggcgcaggggctcaagg 517
>gb|DQ427762.1| Sorghum bicolor voucher NSL51030 locus HHU30 genomic sequence Length = 728 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 425 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 484 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 485 caacgaccgcacgctggcgcaggggctcaagg 516
>gb|DQ427761.1| Sorghum bicolor voucher NSL50875 locus HHU30 genomic sequence Length = 725 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|DQ427760.1| Sorghum bicolor voucher BTx623 locus HHU30 genomic sequence Length = 731 Score = 123 bits (62), Expect = 5e-25 Identities = 113/130 (86%) Strand = Plus / Plus Query: 198 gcagcatctccgcggaccgcgtcccggacatgagcaagagggagctgatgaacctcctgc 257 |||||||| |||| ||||||||||| |||||| ||| || |||||||||||||||| | Sbjct: 183 gcagcatccccgccgaccgcgtccccgacatggagaagcggaagctgatgaacctcctcc 242 Query: 258 tgctgggcgccatctcgctccccaccttcggcatgctcgtcccctacggctccttcctcg 317 | || |||||||||||||| |||||| |||||||| |||||||||||||| ||||| ||| Sbjct: 243 tcctcggcgccatctcgctgcccaccgtcggcatggtcgtcccctacggcgccttcttcg 302 Query: 318 tcccggccgg 327 |||| ||||| Sbjct: 303 tccccgccgg 312 Score = 103 bits (52), Expect = 5e-19 Identities = 82/92 (89%) Strand = Plus / Plus Query: 355 cgccaaggacaagctcggcaacgacatcctcgtcgaggattggctcaagacgcacggccc 414 ||||||||||||||| |||||||||||| || || || ||||||||||||||||| || Sbjct: 428 cgccaaggacaagctgggcaacgacatcacggtggatgagtggctcaagacgcacggtcc 487 Query: 415 caacgaccgcacgctcgcccaggggctcaagg 446 ||||||||||||||| || ||||||||||||| Sbjct: 488 caacgaccgcacgctggcgcaggggctcaagg 519
>gb|AY581830.1| Cynodon dactylon putative Rieske Fe-S precursor protein mRNA, partial cds Length = 511 Score = 77.8 bits (39), Expect = 3e-11 Identities = 48/51 (94%) Strand = Plus / Plus Query: 400 caagacgcacggccccaacgaccgcacgctcgcccaggggctcaagggtga 450 |||||||||||||||||| |||||||||||| | ||||||||||||||||| Sbjct: 1 caagacgcacggccccaaagaccgcacgctcacgcaggggctcaagggtga 51
>emb|AJ784853.1| Cyanophora paradoxa mRNA for Rieske iron-sulphur protein (petC-2 gene) Length = 874 Score = 50.1 bits (25), Expect = 0.007 Identities = 40/45 (88%) Strand = Plus / Plus Query: 418 cgaccgcacgctcgcccaggggctcaagggtgatcctacctacct 462 ||||||| ||||||||||||| |||||||| ||| | |||||||| Sbjct: 428 cgaccgctcgctcgcccagggcctcaagggcgatgccacctacct 472
>emb|AJ222783.1|HVJ222783 Hordeum vulgare mRNA for cytochrome b6/f-complex iron-sulfur like-protein, clone RG115 Length = 275 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 441 tcaagggtgatcctacctaccttgt 465 ||||||||||||||||||||||||| Sbjct: 5 tcaagggtgatcctacctaccttgt 29
>emb|X63605.1|PSPETC P.sativum petC mRNA for chloroplast Rieske FeS protein Length = 880 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 443 aagggtgatcctacctaccttgt 465 ||||||||||||||||||||||| Sbjct: 443 aagggtgatcctacctaccttgt 465
>gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete sequence Length = 214621 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 351 tcgccgccaaggacaagctcggcaa 375 ||||||||||||||| ||||||||| Sbjct: 148155 tcgccgccaaggacacgctcggcaa 148179
>gb|AC124390.4| Mus musculus BAC clone RP24-434C11 from chromosome 12, complete sequence Length = 162663 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ctccaaccccacccagctctg 108 ||||||||||||||||||||| Sbjct: 300 ctccaaccccacccagctctg 280
>emb|AL035665.32|HS644L1 Human DNA sequence from clone RP4-644L1 on chromosome 20q12 Contains the MAFB gene for v-maf musculoaponeurotic fibrosarcoma oncogene homolog B (avian), a novel gene and two CpG islands, complete sequence Length = 145593 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 86 gcctccaaccccacccagctctgcc 110 ||||||||||||||||||| ||||| Sbjct: 4928 gcctccaaccccacccagccctgcc 4904
>gb|AC090377.15| Homo sapiens chromosome 18, clone RP11-866E20, complete sequence Length = 192704 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 atgaacctcctgctgctgggc 265 ||||||||||||||||||||| Sbjct: 142162 atgaacctcctgctgctgggc 142142
>gb|AC107990.5| Homo sapiens chromosome 18, clone RP11-103A19, complete sequence Length = 166109 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 245 atgaacctcctgctgctgggc 265 ||||||||||||||||||||| Sbjct: 25320 atgaacctcctgctgctgggc 25300
>ref|NM_135169.2| Drosophila melanogaster Pez CG9493-RA (Pez), mRNA Length = 4527 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 351 tcgccgccaaggacaagctcggcaa 375 ||||||||||||||| ||||||||| Sbjct: 1040 tcgccgccaaggacacgctcggcaa 1064
>gb|AC156643.2| Mus musculus BAC clone RP23-192O3 from chromosome 12, complete sequence Length = 197420 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 88 ctccaaccccacccagctctg 108 ||||||||||||||||||||| Sbjct: 104844 ctccaaccccacccagctctg 104864
>gb|AF217284.1|AF217284 Drosophila melanogaster protein tyrosine phosphatase Pez (Pez) mRNA, complete cds Length = 4433 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 351 tcgccgccaaggacaagctcggcaa 375 ||||||||||||||| ||||||||| Sbjct: 931 tcgccgccaaggacacgctcggcaa 955
>gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22 of 83 of the complete sequence Length = 280095 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 tcgccgccaaggacaagctcggcaa 375 ||||||||||||||| ||||||||| Sbjct: 119717 tcgccgccaaggacacgctcggcaa 119693
>gb|AC005285.1|AC005285 Drosophila melanogaster DNA sequence (P1s DS00121 (D128), DS05470 (D270), and DS00108 (D120)), complete sequence Length = 209071 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 351 tcgccgccaaggacaagctcggcaa 375 ||||||||||||||| ||||||||| Sbjct: 133071 tcgccgccaaggacacgctcggcaa 133047
>emb|CT009609.1| Desulfococcus multivorans vrl island Length = 89210 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 149 ctgggcttcggccgggagcgcatcc 173 |||||||||| |||||||||||||| Sbjct: 5593 ctgggcttcgaccgggagcgcatcc 5569
>ref|XM_510998.1| PREDICTED: Pan troglodytes LOC454126 (LOC454126), mRNA Length = 2335 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 1802 ctccaccgagctctccaccgcct 1824
>ref|XM_529565.1| PREDICTED: Pan troglodytes LOC452570 (LOC452570), mRNA Length = 1461 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cacatgcatggccggcagca 203 |||||||||||||||||||| Sbjct: 1177 cacatgcatggccggcagca 1158
>ref|NM_018094.2| Homo sapiens G1 to S phase transition 2 (GSPT2), mRNA Length = 2503 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 441 tcccggccggctccggcagcaacg 464
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 agcccgtcaagggcctgggc 154 |||||||||||||||||||| Sbjct: 1548385 agcccgtcaagggcctgggc 1548404
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 cgccgccaaggacaagctcg 371 |||||||||||||||||||| Sbjct: 1291073 cgccgccaaggacaagctcg 1291092
>ref|NM_001297.1| Homo sapiens cyclic nucleotide gated channel beta 1 (CNGB1), mRNA Length = 4382 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 3636 ctccaccgagctctccaccgcct 3658
>gb|AC148476.4| Homo sapiens 12 BAC RP13-714J12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 41737 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 cctgctgctgggcgccatct 272 |||||||||||||||||||| Sbjct: 3763 cctgctgctgggcgccatct 3744
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 agggcctgggcttcggccgg 163 |||||||||||||||||||| Sbjct: 540974 agggcctgggcttcggccgg 540955
>gb|AC124358.4| Mus musculus BAC clone RP24-491B24 from chromosome 3, complete sequence Length = 161119 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 226 catgagcaagagggagctgatgaa 249 |||||||||||||||||| ||||| Sbjct: 31611 catgagcaagagggagcttatgaa 31588
>gb|AY883559.2| Zea mays cultivar inbred line B73 teosinte glume architecture 1 (tga1) gene, complete cds Length = 169976 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctagctcgctcgctcgatcg 31 |||||||||||||||||||| Sbjct: 17452 ctagctcgctcgctcgatcg 17433
>emb|AL929101.4| Human DNA sequence from clone RP11-22B10 on chromosome X Contains the GSPT2 gene for G1 to S phase transition 2, a pseudogene similar to part of p30 (nuclear protein p30), a zinc finger protein pseudogene, the 5' end of a variant of the MAGED1 gene for melanoma antigen, family D, 1 and two CpG islands, complete sequence Length = 157110 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 40213 tcccggccggctccggcagcaacg 40236
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 agggcctgggcttcggccgg 163 |||||||||||||||||||| Sbjct: 671285 agggcctgggcttcggccgg 671266
>emb|AL355861.19| Human DNA sequence from clone RP11-567J24 on chromosome 10 Contains the 5' end of a novel gene, the PRDX3 gene for peroxiredoxin 3 (AOP1, MER5, AOP-1, SP-22), the 5' end of the GPRK5 gene for G protein-coupled receptor kinase 5 (GRK5), a novel gene and four CpG islands, complete sequence Length = 168528 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ccaccgcctccaaccccacc 100 |||||||||||||||||||| Sbjct: 162786 ccaccgcctccaaccccacc 162805
>ref|XM_783177.1| PREDICTED: Strongylocentrotus purpuratus similar to tripartite motif protein TRIM2 (LOC583257), mRNA Length = 1002 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gacatcctcgtcgaggattg 396 |||||||||||||||||||| Sbjct: 757 gacatcctcgtcgaggattg 776
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gatgaacctcctgctgctgg 263 |||||||||||||||||||| Sbjct: 1354483 gatgaacctcctgctgctgg 1354502
>gb|BC036077.1| Homo sapiens G1 to S phase transition 2, mRNA (cDNA clone MGC:33729 IMAGE:5313878), complete cds Length = 2513 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 441 tcccggccggctccggcagcaacg 464
>emb|AJ251548.1|HSA251548 Homo sapiens mRNA for polypeptide chain release factor 3b (GSPT2 gene) Length = 1887 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 245 tcccggccggctccggcagcaacg 268
>emb|AL133055.1|HSM801326 Homo sapiens mRNA; cDNA DKFZp434J1015 (from clone DKFZp434J1015) Length = 1904 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 acctcctgctgctgggcgcc 268 |||||||||||||||||||| Sbjct: 255 acctcctgctgctgggcgcc 236
>emb|CR861342.1| Pongo pygmaeus mRNA; cDNA DKFZp459J1511 (from clone DKFZp459J1511) Length = 2532 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 459 tcccggccggctccggcagcaacg 482
>gb|AC009004.6| Homo sapiens chromosome 19 clone LLNLR-291B11, complete sequence Length = 39608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 cctccaaccccacccagctc 106 |||||||||||||||||||| Sbjct: 1207 cctccaaccccacccagctc 1226
>emb|CR626336.1| full-length cDNA clone CS0DK009YE13 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1947 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 1413 ctccaccgagctctccaccgcct 1435
>gb|AE005819.1| Caulobacter crescentus CB15 section 145 of 359 of the complete genome Length = 10591 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 aggggtcgccgccaaggacaagct 369 |||||||| ||||||||||||||| Sbjct: 457 aggggtcggcgccaaggacaagct 434
>dbj|AK023155.1| Homo sapiens cDNA FLJ13093 fis, clone NT2RP3002151, highly similar to G1 TO S PHASE TRANSITION PROTEIN 1 HOMOLOG Length = 2492 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 431 tcccggccggctccggcagcaacg 454
>dbj|AK001303.1| Homo sapiens cDNA FLJ10441 fis, clone NT2RP1000733, highly similar to Human mRNA for GSPT1-TK protein Length = 2481 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 tcccggccggctccgggagcaacg 341 |||||||||||||||| ||||||| Sbjct: 425 tcccggccggctccggcagcaacg 448
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 369 tcggcaacgacatcctcgtcgagg 392 |||||||||||||| ||||||||| Sbjct: 2955467 tcggcaacgacatcatcgtcgagg 2955444
>gb|AC024585.6| Homo sapiens chromosome 19 clone LLNLF-194E9, complete sequence Length = 26400 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 cctccaaccccacccagctc 106 |||||||||||||||||||| Sbjct: 5912 cctccaaccccacccagctc 5893
>ref|XM_498167.2| PREDICTED: Homo sapiens hypothetical protein DKFZp434J1015 (DKFZp434J1015), mRNA Length = 4839 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 acctcctgctgctgggcgcc 268 |||||||||||||||||||| Sbjct: 104 acctcctgctgctgggcgcc 85
>gb|AC073343.6| Homo sapiens BAC clone RP11-611L7 from 7, complete sequence Length = 173967 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 acctcctgctgctgggcgcc 268 |||||||||||||||||||| Sbjct: 7430 acctcctgctgctgggcgcc 7411
>gb|AC010543.9| Homo sapiens chromosome 16 clone RP11-440K14, complete sequence Length = 180286 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 47204 ctccaccgagctctccaccgcct 47182
>gb|AC157941.4| Mus musculus BAC clone RP24-253I2 from chromosome 3, complete sequence Length = 204323 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 catgagcaagagggagctgatgaa 249 |||||||||||||||||| ||||| Sbjct: 34488 catgagcaagagggagcttatgaa 34511
>gb|AC084658.1|CBRG46L07 Caenorhabditis briggsae cosmid G46L07, complete sequence Length = 35227 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gctcgctcgatcgtcctctc 38 |||||||||||||||||||| Sbjct: 14650 gctcgctcgatcgtcctctc 14631
>gb|AC055858.18| Homo sapiens chromosome 17, clone RP11-682M7, complete sequence Length = 167395 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 catgagcaagagggagctga 245 |||||||||||||||||||| Sbjct: 64910 catgagcaagagggagctga 64929
>gb|AE005063.1| Halobacterium sp. NRC-1 section 94 of 170 of the complete genome Length = 11844 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 407 cacggccccaacgaccgcacgctcgccc 434 |||| |||| |||||||||||||||||| Sbjct: 3212 cacgaccccgacgaccgcacgctcgccc 3239
>gb|AF203698.1|AF203698 Rattus norvegicus T calcium channel alpha1G subunit (Cacna1g) gene, partial cds Length = 4171 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 431 gcccaggggctcaagggtgatcct 454 |||||| ||||||||||||||||| Sbjct: 3845 gcccagaggctcaagggtgatcct 3868
>gb|AF042498.1|AF042498 Homo sapiens rod photoreceptor CNG-channel beta subunit (RCNC2) mRNA, complete cds Length = 4382 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 3636 ctccaccgagctctccaccgcct 3658
>emb|AL591067.35| Mouse DNA sequence from clone RP23-333D2 on chromosome 11, complete sequence Length = 196512 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 agcagccagctcaccatggc 66 |||||||||||||||||||| Sbjct: 110253 agcagccagctcaccatggc 110234
>gb|U58837.1|HSU58837 Human cGMP-gated cation channel beta subunit (CNCG2) mRNA, complete cds Length = 4033 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 3641 ctccaccgagctctccaccgcct 3663
>gb|L15296.1|HUMCNGCCA Homo sapiens clone hRCNC2b retinal rod cyclic nucleotide-gated cation channel gene, complete cds Length = 3408 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 2662 ctccaccgagctctccaccgcct 2684
>gb|L15297.1|HUMCNGCCB Homo sapiens clone hRCNC2a retinal rod cyclic nucleotide-gated cation channel gene, complete cds Length = 3025 Score = 40.1 bits (20), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 67 ctccaccgngctctccaccgcct 89 |||||||| |||||||||||||| Sbjct: 2288 ctccaccgagctctccaccgcct 2310
>gb|DQ147204.1| Zea mays subsp. parviglumis isolate p13 phospholipid transfer protein 1 (plt1) gene, complete cds Length = 780 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 tgctagctcgctcgctcgatcgtc 33 |||||||||||||||||| ||||| Sbjct: 44 tgctagctcgctcgctcgctcgtc 21 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,944,514 Number of Sequences: 3902068 Number of extensions: 2944514 Number of successful extensions: 62157 Number of sequences better than 10.0: 80 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61615 Number of HSP's gapped (non-prelim): 522 length of query: 465 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 443 effective length of database: 17,147,199,772 effective search space: 7596209498996 effective search space used: 7596209498996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)