>TP53B_MOUSE (P70399) Tumor suppressor p53-binding protein 1 (p53-binding protein|
            1) (p53BP1) (53BP1)
          Length = 1957

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +1

Query: 166  SPGDYHAVSPRFFGAPTQHHSTGSWPVRCSYGSSSDGDGAPPANFDASGEEFVD 327
            S GD   +S     A + HH++    +   + S S G GA P    ASG E  D
Sbjct: 1280 SSGDLGDISSFSSKASSSHHTSSGTSLSAIHSSGSSGRGAGPLKGKASGTEAAD 1333

>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -1

Query: 440 SLSTRGLFXTHXR---FLPSRILIXKPSDTHLSSTASMTLESTNSSPLASKFAGGAPSPS 270
           S S   LF    R   F PS   +  PS T+LSS ++ + + + +S L+S +     SPS
Sbjct: 183 SYSDTKLFSFDSRSSIFSPSTPTVISPSYTYLSSISATSFQISTTSELSSSWFSTISSPS 242

>Y159_METJA (Q57623) Hypothetical protein MJ0159|
          Length = 542

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 259 GSSSDGDGAPPANFDASGEEFVD--SSVMEAVELRCV 363
           G   +G+G  PANF   G EF++   +++E  EL+C+
Sbjct: 214 GIIENGEGYLPANFRYFGVEFLERFETILEIDELKCI 250

>VIRB9_AGRTU (P0A3W6) Protein virB9 precursor|
          Length = 293

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +1

Query: 163 VSPGDYHAVSPRFF--GAPTQHHSTGSWPVRCSYGSSSDGDGAPPANFDASGEEFVDSSV 336
           V+ GD   +    F  G  T  H  G+  +   Y  + DG  A  AN+   G +      
Sbjct: 190 VAQGDRSLLPLEVFDNGFTTVFHFPGNVRIPSIYTINPDGKEAV-ANYSVKGSD------ 242

Query: 337 MEAVELRCVSDGFXIRMRDGRNLXCVQN 420
              VE+  VS G+  R+RDG  + C+ N
Sbjct: 243 ---VEISSVSRGW--RLRDGHTVLCIWN 265

>VIRB9_AGRT9 (P0A3W7) Protein virB9 precursor|
          Length = 293

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = +1

Query: 163 VSPGDYHAVSPRFF--GAPTQHHSTGSWPVRCSYGSSSDGDGAPPANFDASGEEFVDSSV 336
           V+ GD   +    F  G  T  H  G+  +   Y  + DG  A  AN+   G +      
Sbjct: 190 VAQGDRSLLPLEVFDNGFTTVFHFPGNVRIPSIYTINPDGKEAV-ANYSVKGSD------ 242

Query: 337 MEAVELRCVSDGFXIRMRDGRNLXCVQN 420
              VE+  VS G+  R+RDG  + C+ N
Sbjct: 243 ---VEISSVSRGW--RLRDGHTVLCIWN 265


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,410,643
Number of Sequences: 219361
Number of extensions: 995219
Number of successful extensions: 3073
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3072
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)