>dbj|AK065414.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022J10, full
           insert sequence
          Length = 1348

 Score =  133 bits (67), Expect = 6e-28
 Identities = 203/252 (80%)
 Strand = Plus / Plus

                                                                       
Query: 237 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 296
           |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 318 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 377

                                                                       
Query: 297 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctgtggagctcag 356
            | ||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||
Sbjct: 378 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctgttgagctcag 437

                                                                       
Query: 357 atgtgtgtcagatggtttcgngatcagaatgcgcgacggaagaaaccttangtgtgtnca 416
           | |||| || ||||| || | ||| | |||||| || || | ||||||||  ||||| ||
Sbjct: 438 aagtgtatctgatggatttgtgattaaaatgcgtgatggcaaaaaccttagatgtgtcca 497

                                                                       
Query: 417 gaataacccccgcgtgctaaggctgcngnattctacncctnaccatgctatcgngctnaa 476
            || ||||| || ||  ||||  ||| | ||||| | ||| |||||||||| |  || ||
Sbjct: 498 aaacaacccgcgggtattaagattgcgggattctgcacctcaccatgctattgttctgaa 557

                       
Query: 477 natggaanatgg 488
            |||||| ||||
Sbjct: 558 gatggaagatgg 569

>ref|NM_192215.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Plus

                                                                       
Query: 237 ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 296
           |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 204 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 263

                                                             
Query: 297 cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 346
            | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 264 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 313

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                            
Query: 237      ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 296
                |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 29069078 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 29069019

                                                                  
Query: 297      cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 346
                 | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 29069018 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 29068969

>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0047E11
          Length = 148109

 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                          
Query: 237    ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 296
              |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 113436 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 113377

                                                                
Query: 297    cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 346
               | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 113376 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 113327

>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score =  107 bits (54), Expect = 3e-20
 Identities = 96/110 (87%)
 Strand = Plus / Minus

                                                                         
Query: 237   ctggcctgttcgctgcagctacggctcgtcatctgacggggacggcgccccgccggcgaa 296
             |||||||||| | ||||| ||||||||||| || ||||||||||||||| |  | ||| |
Sbjct: 29444 ctggcctgtttgttgcagttacggctcgtcttccgacggggacggcgccgctgccgcgga 29385

                                                               
Query: 297   cttcgacgccagcggcgaggagttcgtcgactccagcgtcatggaggctg 346
              | ||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 29384 ttacgacgccagcggcgaggagttcgtcaactccagcgtgatggaggctg 29335

>gb|AY661659.1| Sorghum bicolor clone BAC 75D9, complete sequence
          Length = 204120

 Score =  103 bits (52), Expect = 5e-19
 Identities = 81/88 (92%), Gaps = 2/88 (2%)
 Strand = Plus / Minus

                                                                         
Query: 258   cggctcgtcatctgacggggacggcgcc-ccgccggcgaacttcgacgccagcggcgagg 316
             |||||| || || ||||| ||||||||| |||||| || |||||||||||||||||||||
Sbjct: 87538 cggctcctcctccgacggcgacggcgccgccgccg-cggacttcgacgccagcggcgagg 87480

                                         
Query: 317   agttcgtcgactccagcgtcatggaggc 344
             ||||||||||||||||||||||||||||
Sbjct: 87479 agttcgtcgactccagcgtcatggaggc 87452

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 297     cttcgacgccagcggcgaggagttcgtcga 326
               ||||||||||| ||||||||| ||||||||
Sbjct: 5351194 cttcgacgccaccggcgaggatttcgtcga 5351223



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 287     cgccggcgaacttcgacgccagcg 310
               |||||||||||||||| |||||||
Sbjct: 1177604 cgccggcgaacttcgaggccagcg 1177581

>ref|XM_470886.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 ccagcggcgaggagttcgtcg 325
           |||||||||||||||||||||
Sbjct: 797 ccagcggcgaggagttcgtcg 817

>gb|AC091787.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0087G11, complete sequence
          Length = 169728

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   ccagcggcgaggagttcgtcg 325
             |||||||||||||||||||||
Sbjct: 59911 ccagcggcgaggagttcgtcg 59891

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 305      ccagcggcgaggagttcgtcg 325
                |||||||||||||||||||||
Sbjct: 15990506 ccagcggcgaggagttcgtcg 15990526

>gb|AC145985.2| Pan troglodytes BAC clone RP43-17I24 from 7, complete sequence
          Length = 162953

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     agaaaagggagatggaggtca 52
              |||||||||||||||||||||
Sbjct: 155337 agaaaagggagatggaggtca 155317

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 305      ccagcggcgaggagttcgtcg 325
                |||||||||||||||||||||
Sbjct: 15985040 ccagcggcgaggagttcgtcg 15985060

>dbj|AK107457.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C11, full
           insert sequence
          Length = 1679

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 305 ccagcggcgaggagttcgtcg 325
           |||||||||||||||||||||
Sbjct: 874 ccagcggcgaggagttcgtcg 854

>dbj|AK069492.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021B13, full
           insert sequence
          Length = 2092

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 305 ccagcggcgaggagttcgtcg 325
           |||||||||||||||||||||
Sbjct: 949 ccagcggcgaggagttcgtcg 969

>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence
          Length = 384518

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    agcggcgaggagttcgtcga 326
              ||||||||||||||||||||
Sbjct: 287517 agcggcgaggagttcgtcga 287536

>ref|XM_959238.1| Neurospora crassa OR74A hypothetical protein (NCU01967.1) partial
           mRNA
          Length = 1170

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 gcggaggagggcttccggtg 160
           ||||||||||||||||||||
Sbjct: 512 gcggaggagggcttccggtg 531

>ref|XM_329156.1| Neurospora crassa OR74A hypothetical protein (NCU01967.1) partial
           mRNA
          Length = 1170

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 gcggaggagggcttccggtg 160
           ||||||||||||||||||||
Sbjct: 512 gcggaggagggcttccggtg 531

>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 287     cgccggcgaacttcgacgccagcg 310
               |||||||||||||||| |||||||
Sbjct: 1564916 cgccggcgaacttcgatgccagcg 1564893

>emb|CT025643.4| Mouse DNA sequence from clone RP24-386L23 on chromosome 13, complete
             sequence
          Length = 148821

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    ccagaaaagggagatggagg 49
             ||||||||||||||||||||
Sbjct: 59519 ccagaaaagggagatggagg 59538

>emb|AL683812.12| Human DNA sequence from clone RP5-1014E24 on chromosome 1, complete
             sequence
          Length = 40731

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aatccagaaaagggagatgg 46
             ||||||||||||||||||||
Sbjct: 27171 aatccagaaaagggagatgg 27190

>emb|BX842630.1| Neurospora crassa DNA linkage group I BAC contig B13D15
          Length = 127789

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    gcggaggagggcttccggtg 160
              ||||||||||||||||||||
Sbjct: 110891 gcggaggagggcttccggtg 110910

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     cggatcggcggccagctgct 125
               ||||||||||||||||||||
Sbjct: 6410944 cggatcggcggccagctgct 6410963

>gb|AC160099.1| Unidentified bacterium clone zdt-45e5, complete sequence
          Length = 35743

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   agaatgcgcgacggaagaaa 401
             ||||||||||||||||||||
Sbjct: 21020 agaatgcgcgacggaagaaa 21039

>gb|AE005875.1| Caulobacter crescentus CB15 section 201 of 359 of the complete genome
          Length = 12929

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   gctgcgctgcgcccgctctg 93
            ||||||||||||||||||||
Sbjct: 8270 gctgcgctgcgcccgctctg 8289

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 105     tcggatcggcggccagctgc 124
               ||||||||||||||||||||
Sbjct: 1160879 tcggatcggcggccagctgc 1160860

>gb|AC141895.4| Mus musculus BAC clone RP23-299L22 from 10, complete sequence
          Length = 178358

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   ctgtggagctcagatgtgtg 363
             ||||||||||||||||||||
Sbjct: 64092 ctgtggagctcagatgtgtg 64111


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,552,606
Number of Sequences: 3902068
Number of extensions: 2552606
Number of successful extensions: 43705
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43419
Number of HSP's gapped (non-prelim): 281
length of query: 503
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 481
effective length of database: 17,147,199,772
effective search space: 8247803090332
effective search space used: 8247803090332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)