>NFU1_YEAST (P32860) NifU-like protein, mitochondrial precursor|
          Length = 256

 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 21/45 (46%), Positives = 32/45 (71%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 477
           LRL+GAC+SC SS  T+  GIE +LK  + D +K++ Q+ D +Q+
Sbjct: 190 LRLQGACTSCSSSEVTLKYGIESMLKH-YVDEVKEVIQIMDPEQE 233

>NIFU_ANASL (P33179) Nitrogen fixation protein nifU (Fragment)|
          Length = 112

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 253 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 429
           + +VLD+ VRP LI                 + L+GAC SCPSST T+ + IE  L+++ 
Sbjct: 44  IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103

Query: 430 GDAI 441
             ++
Sbjct: 104 NPSL 107

>HIRP5_MOUSE (Q9QZ23) HIRA-interacting protein 5 (mHIRIP5)|
          Length = 199

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 18/48 (37%), Positives = 32/48 (66%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 486
           L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D D+  E+
Sbjct: 148 LKLQGSCTSCPSSIITLKSGIQNML-QFYIPEVEGVEQVMDDDESDEK 194

>NIFU_ANASP (P20628) Nitrogen fixation protein nifU|
          Length = 300

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 253 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 429
           + +VLD+ VRP LI                 + L+GAC SC SST T+ + IE  L+++ 
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 430 GDAI 441
             ++
Sbjct: 292 NPSL 295

>NIFU_ANAAZ (Q43885) Nitrogen fixation protein nifU|
          Length = 300

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +1

Query: 253 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLKEKF 429
           + +VLD+ VRP LI                 + L+GAC SC SST T+ + IE  L+++ 
Sbjct: 232 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291

Query: 430 GDAI 441
             ++
Sbjct: 292 NPSL 295

>HIRP5_HUMAN (Q9UMS0) HIRA-interacting protein 5|
          Length = 196

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 17/48 (35%), Positives = 31/48 (64%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEE 486
           L+L+G+C+SCPSS  T+  GI+ +L + +   ++ + QV D +   +E
Sbjct: 146 LKLQGSCTSCPSSIITLKNGIQNML-QFYIPEVEGVEQVMDDESDEKE 192

>YH9J_SCHPO (Q9UUB8) NifU-like protein C1709.19c|
          Length = 260

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 477
           L+L GAC +C SS  T+  GI+++LK    + ++++ QV D +++
Sbjct: 194 LKLRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQVLDPEEE 237

>NIFU_PLEBO (Q00241) Nitrogen fixation protein nifU (Fragment)|
          Length = 205

 Score = 35.4 bits (80), Expect = 0.12
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 253 VDRVLDD-VRPYLIXXXXXXXXXXXXXXXXXLRLEGACSSCPSSTTTMNMGIERVLK 420
           + +VLD+ VRP LI                 + L+GAC SC SST T+   +E  L+
Sbjct: 137 IQKVLDEEVRPVLIADGGDVELYDVDGDFVKVTLKGACGSCASSTATLKDAVEAKLR 193

>Y2378_PSEPK (Q88KB2) Hypothetical protein PP2378|
          Length = 194

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 477
           L+  G C  C  +  T+  GIER L E+  + +K +R V D  Q+
Sbjct: 146 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LKGVRDVTDHSQK 189

>NIFU_AZOBR (Q43909) Nitrogen fixation protein nifU|
          Length = 310

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIK 444
           +RL GACS C  S  TM MG++  L E  G+ ++
Sbjct: 267 VRLTGACSGCSQSAGTM-MGVQAKLVEALGEFVR 299

>Y2735_PSESM (Q881Z4) Hypothetical protein PSPTO2735|
          Length = 197

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 343 LRLEGACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQ 477
           L+  G C  C  +  T+  GIER L E+  + +  +R V D  Q+
Sbjct: 149 LQFGGGCQGCGQADVTLKEGIERTLLERIPE-LSGVRDVTDHTQK 192

>MYF5_BOVIN (P17667) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 358 ACSSCPSSTTTMNMGIERVLKEKFGDAIKDIRQVFDGDQQPEETTPEAVNRHLDILRPAI 537
           AC +C   +TTM+      ++E+    +K + Q FD  ++   T P      ++ILR AI
Sbjct: 71  ACKACKRKSTTMDRRKAATMRER--RRLKKVNQAFDTLKRCTTTNPNQRLPKVEILRNAI 128

>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1|
          Length = 881

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
 Frame = +3

Query: 366 QLSQLDDDDEHGHRASAQGE---------------VR*RHQGHPPGVRRGPATRRDD 491
           ++ Q DDD+E      AQG                 R    G PPGVR G +T  +D
Sbjct: 616 RIQQFDDDEEEEDEEEAQGSGESDGEDGAWQGSQLARGARLGQPPGVRSGGSTDSED 672


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,607,841
Number of Sequences: 219361
Number of extensions: 1340692
Number of successful extensions: 4680
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4676
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)