ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd19p04 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 256 bits (654), Expect = 3e-68 Identities = 130/161 (80%), Positives = 139/161 (86%), Gaps = 1/161 (0%) Frame = +2 Query: 110 MAAISSLPFAALRRAADWRPSTATAAVSV-SGGVMLNXXXXXXXXXXXXCVITAGDIPPT 286 MAAISSLPFAALRRAAD RPSTA AA +G V+L+ CV TAGD+PPT Sbjct: 1 MAAISSLPFAALRRAADCRPSTAAAAAGAGAGAVVLSVRPRRGSRSVVRCVATAGDVPPT 60 Query: 287 VADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLMEG 466 VA+TKMNFLKSYKRPI SIYSTVLQELLVQQHLMRYK+TYQYD VFALGFVTVYDQLMEG Sbjct: 61 VAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALGFVTVYDQLMEG 120 Query: 467 YPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQNG 589 YPSNEDRDAIFK+Y+TALNEDPEQYRADAQ+MEEWARSQNG Sbjct: 121 YPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNG 161
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 186 bits (473), Expect = 3e-47 Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 7/163 (4%) Frame = +2 Query: 116 AISSLPFAALRRA------ADWRPSTATAAVSVS-GGVMLNXXXXXXXXXXXXCVITAGD 274 AISSL F AL ++ A RP + + + LN +TA D Sbjct: 5 AISSLSFPALGQSDKISNFASSRPLASAIRICTKFSRLSLNSRSTSKSLIHCMSNVTA-D 63 Query: 275 IPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQ 454 +PP V++TK FLK+YKRPIPSIY+TVLQEL+VQQHLMRYK TY+YDPVFALGFVTVYDQ Sbjct: 64 VPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFVTVYDQ 122 Query: 455 LMEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQ 583 LMEGYPS++DRDAIFK+Y+ ALNEDP+QYR DAQ+MEEWARSQ Sbjct: 123 LMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQ 165
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 186 bits (471), Expect = 6e-47 Identities = 95/169 (56%), Positives = 124/169 (73%), Gaps = 10/169 (5%) Frame = +2 Query: 110 MAAISSLPFAALRRAADWRPSTATAAVSVS----------GGVMLNXXXXXXXXXXXXCV 259 MAA++S+ F+A+ ++A+ R S+ +++ S+ V + Sbjct: 1 MAAVTSVSFSAITQSAE-RKSSVSSSRSIDTFRFRSNFSFDSVNVRSSNSTSRFVVHCTS 59 Query: 260 ITAGDIPPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFV 439 +A D+P TVADTK+ FL +YKRPIP++Y+TVLQEL+VQQHL RYK +YQYDPVFALGFV Sbjct: 60 SSAADLP-TVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALGFV 118 Query: 440 TVYDQLMEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQN 586 TVYDQLMEGYPS EDR+AIFK+Y+ AL EDPEQYRADAQ++EEWAR+QN Sbjct: 119 TVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQN 167
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 95.9 bits (237), Expect = 8e-20 Identities = 41/99 (41%), Positives = 68/99 (68%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 TV+DTK F + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ ME Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARS 580 GY D+++IF + A+ ++P++YR DA+R++ A+S Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQS 104
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 94.4 bits (233), Expect = 2e-19 Identities = 40/99 (40%), Positives = 68/99 (68%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 TV+DTK F + RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +D+ M+ Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARS 580 GY D+++IF + A+ ++P++YR DA+R++ A+S Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQS 104
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 91.7 bits (226), Expect = 1e-18 Identities = 44/98 (44%), Positives = 62/98 (63%) Frame = +2 Query: 278 PPTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQL 457 P TV+DTK F ++ RPI SIY ++ELLV+ HL+R ++Y P+FALG VT +DQ Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63 Query: 458 MEGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEW 571 MEGY DRD IF + A +P+Q + DA +++ Sbjct: 64 MEGYQPEGDRDRIFHALCVAEEMNPQQLKEDAASWQQY 101
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 88.2 bits (217), Expect = 2e-17 Identities = 45/95 (47%), Positives = 61/95 (64%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T++ TK F +Y RPI ++Y V++ELLV+ HL ST+ YDP FALG VT+YD LME Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEE 568 Y E R+AIF + AL+ PE R +A+ + E Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLE 100
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 87.8 bits (216), Expect = 2e-17 Identities = 46/99 (46%), Positives = 61/99 (61%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T++ TK F +Y RPI + Y V++ELLV+ HL S + YDP FALG VT+YD LME Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARS 580 Y E R+AIF + AL+ PE R +A+ + E RS Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRS 104
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 87.4 bits (215), Expect = 3e-17 Identities = 42/99 (42%), Positives = 61/99 (61%) Frame = +2 Query: 281 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 460 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64 Query: 461 EGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWAR 577 Y E +F + A+ ++PEQYR DA + E R Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVR 103
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 87.4 bits (215), Expect = 3e-17 Identities = 42/99 (42%), Positives = 61/99 (61%) Frame = +2 Query: 281 PTVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLM 460 PTV+D+K F +Y RPI +Y V++ELLV+ HL+ +++ YDP+FALG VT +D M Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64 Query: 461 EGYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWAR 577 Y E +F + A+ ++PEQYR DA + E R Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVR 103
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 84.7 bits (208), Expect = 2e-16 Identities = 39/93 (41%), Positives = 57/93 (61%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 TV+D K F Y RPI SIY ++ELLV+ HL+ + YDP+FALG VT ++ M+ Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRM 562 GY E AIF + ++++P+Q R DA+ + Sbjct: 66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNV 98
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 84.7 bits (208), Expect = 2e-16 Identities = 42/90 (46%), Positives = 56/90 (62%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 TV+D+K F +Y RP+ SIY V+ ELLV+ HL+ +++DP+FA G +T Y LME Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADA 553 GY E RDAI ++ TAL EQ DA Sbjct: 66 GYTPVEQRDAILRALCTALELSYEQLHTDA 95
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 60.5 bits (145), Expect = 4e-09 Identities = 28/101 (27%), Positives = 58/101 (57%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T+AD+K F +++ I +Y + ELLV+ HL+ ++S+++ P+FA+G TV+D Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQN 586 GY E + + ++ D +R +++R + A++++ Sbjct: 66 GYRPEEHITGLLDALCSSNGYDANTFRKESKRCIDAAKTES 106
>THF1_SYNPX (Q7U6N6) Protein thf1| Length = 212 Score = 60.5 bits (145), Expect = 4e-09 Identities = 29/91 (31%), Positives = 54/91 (59%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T+AD+K F +++ I +Y + ELLV+ HL+ +++T+Q + +FA+G TV+++ + Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQ 556 GY E A+ + ++ D EQ + AQ Sbjct: 66 GYRPMEHPAALLSALCSSNGFDDEQLKQAAQ 96
>THF1_SYNSC (Q3AJN7) Protein thf1| Length = 215 Score = 60.1 bits (144), Expect = 5e-09 Identities = 28/101 (27%), Positives = 58/101 (57%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T+AD+K F +++ I +Y + ELLV+ HL+ ++S ++ + +F++G TV+D ++ Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQN 586 GY DA+F++ ++ D + R + E A+ ++ Sbjct: 66 GYRPEAQTDALFRALCSSNGFDAAKLRKTYASLVEQAKGKD 106
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 58.9 bits (141), Expect = 1e-08 Identities = 31/101 (30%), Positives = 48/101 (47%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T+AD+K F + IPS+Y ELLV+ HL+ ++ + D +FA+G V+D Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARSQN 586 GY +F + + DP R AQ+ E R + Sbjct: 66 GYRPEAHVKTLFDALCRSCGFDPNALRKQAQQTLESVRGHD 106
>THF1_PROMT (Q46L45) Protein thf1| Length = 199 Score = 57.0 bits (136), Expect = 4e-08 Identities = 26/99 (26%), Positives = 53/99 (53%) Frame = +2 Query: 284 TVADTKMNFLKSYKRPIPSIYSTVLQELLVQQHLMRYKSTYQYDPVFALGFVTVYDQLME 463 T++D+K +F K + IP+IY + ELLV+ HL+ ++ ++ D +F+ G V+ + Sbjct: 6 TISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSKFTS 65 Query: 464 GYPSNEDRDAIFKSYVTALNEDPEQYRADAQRMEEWARS 580 GY +E +F + +P + ++++ A+S Sbjct: 66 GYKPSEHATKLFDAICNCNGFNPTEINNSSEQLVSNAKS 104
>BIMA_EMENI (P17885) Protein bimA| Length = 806 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +2 Query: 377 QHLMRYKSTYQYDPVFALGFVTVYDQLMEGYPSNEDRDAIFKSYVTALNEDPEQYRA 547 Q L +K Q DP FA GF + Y +NE+ D +Y + +N D Y A Sbjct: 599 QALKCFKRATQLDPHFAYGFTLQGHE----YVANEEYDKALDAYRSGINADSRHYNA 651
>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring| protein 2) (PRKA2) (AKAP-2) Length = 1103 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = -3 Query: 285 VGGISPAVMTQRTTEREPRRALALSMTPPETLTAAVAVDGLQSAARRSAANGSDDMAAMG 106 VGG+SP V T+ EP A PP + + D + A R + + S A+G Sbjct: 318 VGGLSPPV--HEATQPEPTERTASRQAPPHIELSNSSPDPMAEAERTNGHSPSQPRDALG 375 Query: 105 ES 100 +S Sbjct: 376 DS 377
>YJ9G_YEAST (P47170) Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic| region Length = 1584 Score = 26.6 bits (57), Expect(2) = 7.8 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%) Frame = +2 Query: 467 YPSNED--RDAIFKSYVTALNEDPEQY 541 +PS +D R+ IF+++ LN D EQY Sbjct: 902 FPSKDDFDRNFIFRNHSVTLNTDQEQY 928 Score = 21.2 bits (43), Expect(2) = 7.8 Identities = 10/32 (31%), Positives = 15/32 (46%) Frame = +1 Query: 292 RYKDELPEVVQTSYSKHLQYSSTRTFGAATSD 387 R+KD P+ V YSK +++ SD Sbjct: 870 RWKDVWPKYVARKYSKWRSFTTPAELPITISD 901
>SN_HUMAN (Q9BZZ2) Sialoadhesin precursor (Sialic acid-binding Ig-like| lectin-1) (Siglec-1) (CD169 antigen) Length = 1709 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +1 Query: 76 VREPVAARGLSHGGHIVAS 132 V EP+A LSHGGHI+AS Sbjct: 436 VSEPLATLVLSHGGHILAS 454
>PFTB_CAEEL (P41992) Probable protein farnesyltransferase beta subunit (EC| 2.5.1.58) (CAAX farnesyltransferase beta subunit) (RAS proteins prenyltransferase beta) (FTase-beta) Length = 335 Score = 29.3 bits (64), Expect = 8.9 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = +1 Query: 106 SHGGHIVASVRCTAPSGRLEAVDGDCRGERLRWRHAQREGSAG 234 SH G I V A +GRL+ +D D E L +R G G Sbjct: 195 SHSGQIYCCVGALAIAGRLDEIDRDRTAEWLAFRQCDSGGLNG 237
>HXA4_HUMAN (Q00056) Homeobox protein Hox-A4 (Hox-1D) (Hox-1.4)| Length = 320 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%) Frame = +1 Query: 16 APVNYPFALTGGVDHP-PPYPVREPVAARGLSHGGH 120 A YP+ GG PP P + P A+G +HG H Sbjct: 96 ADTAYPYGYRGGASPGRPPQPEQPPAQAKGPAHGLH 131
>FUT6_ARATH (Q9XI80) Fucosyltransferase 6 (EC 2.4.1.-) (AtFUT6)| Length = 537 Score = 29.3 bits (64), Expect = 8.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -1 Query: 572 PTLPSFVHQPCIAQDLHLTPLHMT*RWHPCPRCWGT 465 PT P+ PCI Q + P H+T H C WGT Sbjct: 477 PTGPTAPDPPCI-QSTSMDPCHLTPPSHGCEPEWGT 511 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,326,367 Number of Sequences: 219361 Number of extensions: 1913559 Number of successful extensions: 6345 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 6063 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6344 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
