ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19o20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 305 7e-80
2gb|AY110393.1| Zea mays CL5132_1 mRNA sequence 204 2e-49
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 174 2e-40
4gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare str... 174 2e-40
5gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare str... 174 2e-40
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
7gb|U95179.1|PAU95179 Prunus armeniaca putative NifU protein mRNA... 60 7e-06
8dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 50 0.007
9emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), ... 44 0.44
10emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 44 0.44
11dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 44 0.44
12dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 44 0.44
13gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 44 0.44
14gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 44 0.44
15gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
16ref|XM_775936.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 1.7
17gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
18gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.7
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
20gb|AY566569.1| Felis catus myocilin mRNA, complete cds 42 1.7
21dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
22gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 42 1.7
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
24ref|XM_482570.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
25ref|XM_469195.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
26ref|XM_470813.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.9
27gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genom... 40 6.9
28ref|XM_612765.2| PREDICTED: Bos taurus similar to diencephalon/m... 40 6.9
29gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 6.9
30gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosyntheti... 40 6.9
31gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genom... 40 6.9
32gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genom... 40 6.9
33ref|XM_380597.1| Gibberella zeae PH-1 chromosome 1 METK_NEUCR S-... 40 6.9
34gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.9
35gb|AY327039.1| Oryza sativa (japonica cultivar-group) iron trans... 40 6.9
36gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 6.9
37emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 6.9
38gb|DQ397877.1| Cenarchaeum symbiosum clone C06F03, complete sequ... 40 6.9
39gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of... 40 6.9
40gb|AC156642.2| Mus musculus BAC clone RP23-254J5 from chromosome... 40 6.9
41dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
42gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.9
43gb|AC133208.3| Mus musculus BAC clone RP23-17O6 from chromosome ... 40 6.9
44gb|AC152558.1| Mus musculus BAC clone RP23-300E6 from chromosome... 40 6.9
45dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.9
46emb|BX546504.9| Mouse DNA sequence from clone RP23-78N22 on chro... 40 6.9
47dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.9
48dbj|AK107681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.9
49emb|AJ331161.1|HSA331161 Homo sapiens genomic sequence surroundi... 40 6.9
50emb|BX088543.11| Mouse DNA sequence from clone RP23-234K17 on ch... 40 6.9
51gb|AF065891.1|AF065891 Ralstonia eutropha JMP134 phenol hydroxyl... 40 6.9
52emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 6.9
53dbj|AB070226.1| Oryza sativa OsIRT1 mRNA for iron regulated meta... 40 6.9 
>dbj|AK069184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full
           insert sequence
          Length = 1154

 Score =  305 bits (154), Expect = 7e-80
 Identities = 235/262 (89%)
 Strand = Plus / Plus

                                                                       
Query: 215 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 274
           |||||||| || |||||||| | ||||||||| |||||| |||| |||||||||||||||
Sbjct: 256 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 315

                                                                       
Query: 275 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 334
           || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| 
Sbjct: 316 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 375

                                                                       
Query: 335 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 394
           |||||||||||| ||||||| | ||| ||||| |||||| |||| || ||||||||||||
Sbjct: 376 gaggacggcgtcatctccctcaagctcgaaggagcgtgcggcagctgccccagctcgacg 435

                                                                       
Query: 395 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 454
           ||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | || 
Sbjct: 436 acgacgatgaagatgggcatcgagcgcgtgctcaaggagaagttcggcgacgccgtaaaa 495

                                 
Query: 455 gacatccgccaggtgttcgacg 476
           || |||||||||||||||||||
Sbjct: 496 gatatccgccaggtgttcgacg 517
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>gb|AY110393.1| Zea mays CL5132_1 mRNA sequence
          Length = 844

 Score =  204 bits (103), Expect = 2e-49
 Identities = 220/261 (84%)
 Strand = Plus / Minus

                                                                       
Query: 215 ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 274
           |||| ||| || |||||||| ||||| ||||| ||||| ||||| |||||||||||||||
Sbjct: 762 ggagncggcctctactcggcggcgacgtacgagctgaccccggaaaacgtcgaccgcgtc 703

                                                                       
Query: 275 ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 334
           || |||||||| || || ||||||||||| |||     | ||||| |||||||  |||| 
Sbjct: 702 ctggacgacgtccggccgtacctcatctctgacnnnnncaacgtcaccgtcgttgccgtc 643

                                                                       
Query: 335 gaggacggcgtcgtctcccttaggcttgaaggggcgtgcagcagttgtcccagctcgacg 394
           |||||||| ||| ||||||| | ||| ||||| || ||| |||| || ||||||| ||||
Sbjct: 642 gaggacggtgtcatctccctcaagctcgaaggagcttgcggcagctgccccagcttgacg 583

                                                                       
Query: 395 acgacgatgaacatgggcatcgagcgagtgctcaaggagaagttcggtgacgccatcaag 454
           ||||||||||| |||||||||||||| |||||||||||||||||||| |||||  |||||
Sbjct: 582 acgacgatgaatatgggcatcgagcgtgtgctcaaggagaagttcggcgacgctttcaag 523

                                
Query: 455 gacatccgccaggtgttcgac 475
           || ||||| ||||||||||||
Sbjct: 522 gaaatccgtcaggtgttcgac 502
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  174 bits (88), Expect = 2e-40
 Identities = 127/140 (90%)
 Strand = Plus / Plus

                                                                            
Query: 215      ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 274
                |||||||| || |||||||| | ||||||||| |||||| |||| |||||||||||||||
Sbjct: 11245233 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 11245292

                                                                            
Query: 275      ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 334
                || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| 
Sbjct: 11245293 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 11245352

                                    
Query: 335      gaggacggcgtcgtctccct 354
                |||||||||||| |||||||
Sbjct: 11245353 gaggacggcgtcatctccct 11245372



 Score =  137 bits (69), Expect = 4e-29
 Identities = 99/109 (90%)
 Strand = Plus / Plus

                                                                            
Query: 368      gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 427
                |||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 11245516 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 11245575

                                                                 
Query: 428      aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 476
                |||||||||||||| |||||| | || || |||||||||||||||||||
Sbjct: 11245576 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 11245624



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 304      cgacggcggcgacgtcgccg 323
                ||||||||||||||||||||
Sbjct: 26000081 cgacggcggcgacgtcgccg 26000100



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 307      cggcggcgacgtcgccgtcg 326
                ||||||||||||||||||||
Sbjct: 15507576 cggcggcgacgtcgccgtcg 15507557
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>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAb0085H08, from chromosome 3, complete sequence
          Length = 130656

 Score =  174 bits (88), Expect = 2e-40
 Identities = 127/140 (90%)
 Strand = Plus / Plus

                                                                         
Query: 215   ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 274
             |||||||| || |||||||| | ||||||||| |||||| |||| |||||||||||||||
Sbjct: 24186 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 24245

                                                                         
Query: 275   ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 334
             || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| 
Sbjct: 24246 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 24305

                                 
Query: 335   gaggacggcgtcgtctccct 354
             |||||||||||| |||||||
Sbjct: 24306 gaggacggcgtcatctccct 24325



 Score =  137 bits (69), Expect = 4e-29
 Identities = 99/109 (90%)
 Strand = Plus / Plus

                                                                         
Query: 368   gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 427
             |||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 24469 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 24528

                                                              
Query: 428   aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 476
             |||||||||||||| |||||| | || || |||||||||||||||||||
Sbjct: 24529 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 24577
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>gb|AC118340.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0085H08, from chromosome 3, complete sequence
          Length = 126708

 Score =  174 bits (88), Expect = 2e-40
 Identities = 127/140 (90%)
 Strand = Plus / Minus

                                                                         
Query: 215   ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 274
             |||||||| || |||||||| | ||||||||| |||||| |||| |||||||||||||||
Sbjct: 35815 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 35756

                                                                         
Query: 275   ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 334
             || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| 
Sbjct: 35755 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 35696

                                 
Query: 335   gaggacggcgtcgtctccct 354
             |||||||||||| |||||||
Sbjct: 35695 gaggacggcgtcatctccct 35676



 Score =  137 bits (69), Expect = 4e-29
 Identities = 99/109 (90%)
 Strand = Plus / Minus

                                                                         
Query: 368   gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 427
             |||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 35532 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 35473

                                                              
Query: 428   aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 476
             |||||||||||||| |||||| | || || |||||||||||||||||||
Sbjct: 35472 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 35424
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  174 bits (88), Expect = 2e-40
 Identities = 127/140 (90%)
 Strand = Plus / Plus

                                                                            
Query: 215      ggaggcgggctttactcggcagcgacctacgaactgacgccggataacgtcgaccgcgtc 274
                |||||||| || |||||||| | ||||||||| |||||| |||| |||||||||||||||
Sbjct: 11241996 ggaggcggcctgtactcggcggagacctacgagctgacggcggagaacgtcgaccgcgtc 11242055

                                                                            
Query: 275      ctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgta 334
                || |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| 
Sbjct: 11242056 ctggacgacgtgcgcccctacctcatcgccgacggcggcgacgtcaccgtcgcgtccgtc 11242115

                                    
Query: 335      gaggacggcgtcgtctccct 354
                |||||||||||| |||||||
Sbjct: 11242116 gaggacggcgtcatctccct 11242135



 Score =  137 bits (69), Expect = 4e-29
 Identities = 99/109 (90%)
 Strand = Plus / Plus

                                                                            
Query: 368      gcgtgcagcagttgtcccagctcgacgacgacgatgaacatgggcatcgagcgagtgctc 427
                |||||| |||| || ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 11242279 gcgtgcggcagctgccccagctcgacgacgacgatgaagatgggcatcgagcgcgtgctc 11242338

                                                                 
Query: 428      aaggagaagttcggtgacgccatcaaggacatccgccaggtgttcgacg 476
                |||||||||||||| |||||| | || || |||||||||||||||||||
Sbjct: 11242339 aaggagaagttcggcgacgccgtaaaagatatccgccaggtgttcgacg 11242387



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 304      cgacggcggcgacgtcgccg 323
                ||||||||||||||||||||
Sbjct: 26091390 cgacggcggcgacgtcgccg 26091409



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 307      cggcggcgacgtcgccgtcg 326
                ||||||||||||||||||||
Sbjct: 15502110 cggcggcgacgtcgccgtcg 15502091
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>gb|U95179.1|PAU95179 Prunus armeniaca putative NifU protein mRNA, partial cds
          Length = 636

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                       
Query: 287 cgcccctacctcatctccgacggcggcgacgtcgccgtcgtgtccgtagaggacggcgtc 346
           |||||||| |||||| | || ||||| ||||||| ||| |||||||| ||||||||||||
Sbjct: 43  cgcccctatctcatcgctgatggcggtgacgtcgacgttgtgtccgttgaggacggcgtc 102

             
Query: 347 gt 348
           ||
Sbjct: 103 gt 104
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                           
Query: 256     ggataacgtcgaccgcgtcctcgacgacgtgcgcccctacctcatctccgacggcggcga 315
               |||||||||||| |  |||||||||||  ||||||||||  | || |||||||||||| |
Sbjct: 3071251 ggataacgtcgagctggtcctcgacgaattgcgcccctatttgatgtccgacggcggcaa 3071192

                    
Query: 316     cgtcg 320
               |||||
Sbjct: 3071191 cgtcg 3071187
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>emb|X04616.2|ANPSBA1 Synechococcus sp. PCC 7942 pmg1 (partial), secG, bcsA, psbK, tgt, sys,
             end3, pur6, dpdX, dxs, leu1, sek0003, sek0005, sek0006,
             sek0007, sek0008, sek0009, sek0010, sek0011, sek0012,
             sel0013,  sek0016, sel0017, sek0018, sel0019, sek0020,
             sek0022, sek0024, sek0025, sek0026, sek0027, sel0028,
             sek0030, sek0031, sel0032, sel0033, sel0034, sel0035,
             sel0036, sel0037, sel0039, sek0041, sek0043, sek0044,
             sek0045, psba-I gene, sek0047 and sel0048 (partial) genes
          Length = 42558

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 271   cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 320
             |||||| |||||  ||||||||||||||||  |||| |||||| ||||||
Sbjct: 14915 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 14964
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>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 301    ctccgacggcggcgacgtcgcc 322
              ||||||||||||||||||||||
Sbjct: 317729 ctccgacggcggcgacgtcgcc 317750
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 377     agttgtcccagctcgacgacga 398
               ||||||||||||||||||||||
Sbjct: 3863412 agttgtcccagctcgacgacga 3863391
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                 
Query: 271     cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 320
               |||||| |||||  ||||||||||||||||  |||| |||||| ||||||
Sbjct: 1180629 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 1180678
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 377     agttgtcccagctcgacgacga 398
               ||||||||||||||||||||||
Sbjct: 3864086 agttgtcccagctcgacgacga 3864065
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                                
Query: 271    cgtcctcgacgacgtgcgcccctacctcatctccgacggcggcgacgtcg 320
              |||||| |||||  ||||||||||||||||  |||| |||||| ||||||
Sbjct: 440251 cgtcctggacgagctgcgcccctacctcattgccgatggcggcaacgtcg 440202
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 302     tccgacggcggcgacgtcgccgtcg 326
               |||||||||||||| ||||||||||
Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
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>ref|XM_775936.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11081-PA,
            isoform A (LOC575541), mRNA
          Length = 4581

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 299  atctccgacggcggcgacgtc 319
            |||||||||||||||||||||
Sbjct: 1545 atctccgacggcggcgacgtc 1525
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>gb|AC131967.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0049K09, complete sequence
          Length = 154181

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 302   tccgacggcggcgacgtcgccgtcg 326
             |||||||||||||| ||||||||||
Sbjct: 71365 tccgacggcggcgaggtcgccgtcg 71341
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 258    ataacgtcgaccgcgtcctcg 278
              |||||||||||||||||||||
Sbjct: 869679 ataacgtcgaccgcgtcctcg 869699
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 302     tccgacggcggcgacgtcgccgtcg 326
               |||||||||||||| ||||||||||
Sbjct: 1458611 tccgacggcggcgaggtcgccgtcg 1458587
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>gb|AY566569.1| Felis catus myocilin mRNA, complete cds
          Length = 2125

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 454 ggacatccgccaggtgttcga 474
           |||||||||||||||||||||
Sbjct: 943 ggacatccgccaggtgttcga 963
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>dbj|AK107098.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H10, full
           insert sequence
          Length = 1686

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 302 tccgacggcggcgacgtcgccgtcg 326
           |||||||||||||| ||||||||||
Sbjct: 73  tccgacggcggcgaggtcgccgtcg 49
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 303     ccgacggcggcgacgtcgccg 323
               |||||||||||||||||||||
Sbjct: 1373632 ccgacggcggcgacgtcgccg 1373612



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 309     gcggcgacgtcgccgtcgtg 328
               ||||||||||||||||||||
Sbjct: 1082174 gcggcgacgtcgccgtcgtg 1082155
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 302     tccgacggcggcgacgtcgccgtcg 326
               |||||||||||||| ||||||||||
Sbjct: 1458608 tccgacggcggcgaggtcgccgtcg 1458584
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>ref|XM_482570.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 304 cgacggcggcgacgtcgccg 323
           ||||||||||||||||||||
Sbjct: 960 cgacggcggcgacgtcgccg 979
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>ref|XM_469195.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1405

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 cgacggcggcgacgtcgccg 323
           ||||||||||||||||||||
Sbjct: 587 cgacggcggcgacgtcgccg 568
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>ref|XM_470813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cggcggcgacgtcgccgtcg 326
            ||||||||||||||||||||
Sbjct: 1168 cggcggcgacgtcgccgtcg 1149
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>gb|AC145388.2| Oryza sativa chromosome 3 BAC OSJNBb0036M02 genomic sequence, complete
              sequence
          Length = 125380

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    cgacggcggcgacgtcgccg 323
              ||||||||||||||||||||
Sbjct: 103005 cgacggcggcgacgtcgccg 102986
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>ref|XM_612765.2| PREDICTED: Bos taurus similar to diencephalon/mesencephalon homeobox
            1 isoform a (LOC540714), mRNA
          Length = 1776

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 31   gtcgctgaccgcggccgccgctgc 54
            ||||||| ||||||||||||||||
Sbjct: 1593 gtcgctgtccgcggccgccgctgc 1616
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     gcggcgacgtcgccgtcgtg 328
               ||||||||||||||||||||
Sbjct: 3121701 gcggcgacgtcgccgtcgtg 3121720
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>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster,
             complete sequence
          Length = 135638

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    cgtcgctgaccgcggccgcc 49
             ||||||||||||||||||||
Sbjct: 58619 cgtcgctgaccgcggccgcc 58638
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>gb|AC135792.3| Oryza sativa chromosome 3 BAC OSJNBa0056E06 genomic sequence,
            complete sequence
          Length = 140720

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  cgacggcggcgacgtcgccg 323
            ||||||||||||||||||||
Sbjct: 7839 cgacggcggcgacgtcgccg 7820
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>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence,
            complete sequence
          Length = 115079

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 307  cggcggcgacgtcgccgtcg 326
            ||||||||||||||||||||
Sbjct: 7127 cggcggcgacgtcgccgtcg 7108
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>ref|XM_380597.1| Gibberella zeae PH-1 chromosome 1 METK_NEUCR S-adenosylmethionine
           synthetase (Methionine adenosyltransferase) (AdoMet
           synthetase) (FG00421.1) partial mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 441 gtgacgccatcaaggacatc 460
           ||||||||||||||||||||
Sbjct: 269 gtgacgccatcaaggacatc 288
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 33      cgctgaccgcggccgccgct 52
               ||||||||||||||||||||
Sbjct: 1048445 cgctgaccgcggccgccgct 1048464
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>gb|AY327039.1| Oryza sativa (japonica cultivar-group) iron transporter Fe3 mRNA,
           complete cds
          Length = 1380

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 cgacggcggcgacgtcgccg 323
           ||||||||||||||||||||
Sbjct: 561 cgacggcggcgacgtcgccg 542
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 40      cgcggccgccgctgctacctcgtc 63
               |||||||||||| |||||||||||
Sbjct: 2510694 cgcggccgccgccgctacctcgtc 2510717
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    ccgacggcggcgacgtcgcc 322
              ||||||||||||||||||||
Sbjct: 128848 ccgacggcggcgacgtcgcc 128829
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>gb|DQ397877.1| Cenarchaeum symbiosum clone C06F03, complete sequence
          Length = 37987

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   atgaacatgggcatcgagcg 420
             ||||||||||||||||||||
Sbjct: 13122 atgaacatgggcatcgagcg 13103
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>gb|AE005908.1| Caulobacter crescentus CB15 section 234 of 359 of the complete genome
          Length = 11320

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 304  cgacggcggcgacgtcgccg 323
            ||||||||||||||||||||
Sbjct: 1920 cgacggcggcgacgtcgccg 1939
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>gb|AC156642.2| Mus musculus BAC clone RP23-254J5 from chromosome 9, complete sequence
          Length = 193872

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     cacacggcacacaatggagg 29
              ||||||||||||||||||||
Sbjct: 100141 cacacggcacacaatggagg 100122
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 304      cgacggcggcgacgtcgccg 323
                ||||||||||||||||||||
Sbjct: 21150384 cgacggcggcgacgtcgccg 21150403
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 270     gcgtcctcgacgacgtgcgc 289
               ||||||||||||||||||||
Sbjct: 1652711 gcgtcctcgacgacgtgcgc 1652692



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   cgacggcggcgacgtcgccg 323
             ||||||||||||||||||||
Sbjct: 55620 cgacggcggcgacgtcgccg 55601
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>gb|AC133208.3| Mus musculus BAC clone RP23-17O6 from chromosome unknown, complete
              sequence
          Length = 239189

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     cacacggcacacaatggagg 29
              ||||||||||||||||||||
Sbjct: 125403 cacacggcacacaatggagg 125422
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>gb|AC152558.1| Mus musculus BAC clone RP23-300E6 from chromosome unknown, complete
             sequence
          Length = 210585

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    cacacggcacacaatggagg 29
             ||||||||||||||||||||
Sbjct: 91578 cacacggcacacaatggagg 91559
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 262     cgtcgaccgcgtcctcgacgacgt 285
               ||||||||||| ||||||||||||
Sbjct: 1790964 cgtcgaccgcgacctcgacgacgt 1790941
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>emb|BX546504.9| Mouse DNA sequence from clone RP23-78N22 on chromosome X, complete
             sequence
          Length = 107447

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    cacacggcacacaatggagg 29
             ||||||||||||||||||||
Sbjct: 76542 cacacggcacacaatggagg 76561
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>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0413H11
          Length = 147655

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    cgacggcggcgacgtcgccg 323
              ||||||||||||||||||||
Sbjct: 121594 cgacggcggcgacgtcgccg 121613
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>dbj|AK107681.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-A08, full
           insert sequence
          Length = 1405

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 cgacggcggcgacgtcgccg 323
           ||||||||||||||||||||
Sbjct: 587 cgacggcggcgacgtcgccg 568
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>emb|AJ331161.1|HSA331161 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-DE22RS
          Length = 714

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 301 ctccgacggcggcgacgtcg 320
           ||||||||||||||||||||
Sbjct: 223 ctccgacggcggcgacgtcg 204
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>emb|BX088543.11| Mouse DNA sequence from clone RP23-234K17 on chromosome X, complete
             sequence
          Length = 158674

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    cacacggcacacaatggagg 29
             ||||||||||||||||||||
Sbjct: 65437 cacacggcacacaatggagg 65456
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>gb|AF065891.1|AF065891 Ralstonia eutropha JMP134 phenol hydroxylase gene cluster, complete
            sequence
          Length = 8620

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 40   cgcggccgccgctgctacctcgtc 63
            |||||||||||| |||||||||||
Sbjct: 1930 cgcggccgccgccgctacctcgtc 1907
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    cgacggcggcgacgtcgccg 323
              ||||||||||||||||||||
Sbjct: 659260 cgacggcggcgacgtcgccg 659241
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>dbj|AB070226.1| Oryza sativa OsIRT1 mRNA for iron regulated metal transporter,
           complete cds
          Length = 1395

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 cgacggcggcgacgtcgccg 323
           ||||||||||||||||||||
Sbjct: 561 cgacggcggcgacgtcgccg 542


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,780,812
Number of Sequences: 3902068
Number of extensions: 2780812
Number of successful extensions: 69512
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67309
Number of HSP's gapped (non-prelim): 2202
length of query: 510
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 488
effective length of database: 17,147,199,772
effective search space: 8367833488736
effective search space used: 8367833488736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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