>ITA5_HUMAN (P08648) Integrin alpha-5 precursor (Fibronectin receptor alpha|
           subunit) (Integrin alpha-F) (VLA-5) (CD49e antigen)
           [Contains: Integrin alpha-5 heavy chain; Integrin
           alpha-5 light chain]
          Length = 1049

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = +2

Query: 62  PLGILYLPTCVGFGYRYPFVEGRSSFSWEYGIGYILQRRSAWYEPRGEAIASPRGSYF 235
           P+G  YL T   F     +   RS FSW  G GY     SA +   G  +    GSYF
Sbjct: 172 PVGTCYLSTD-NFTRILEYAPCRSDFSWAAGQGYCQGGFSAEFTKTGRVVLGGPGSYF 228

>DOK1_MOUSE (P97465) Docking protein 1 (Downstream of tyrosine kinase 1)|
           (p62(dok))
          Length = 482

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
 Frame = -3

Query: 228 EPRGLAIASPRGSY------------QALRR*SM*PMPYSQEKLERPSTKGYLYPKPTQV 85
           EP GLA A PRG Y            QA  +     +PY+      P+T  Y  P P   
Sbjct: 363 EPEGLAPAPPRGLYDLPQEPRDAWWCQARLKEEGYELPYN------PATDDYAVPPP--- 413

Query: 84  GR*RIPRGHPFSRSYGAILPSS 19
              R P+  P  +  G ILP S
Sbjct: 414 ---RSPKPAPAPKPQGLILPES 432

>NHR54_CAEEL (O45460) Nuclear hormone receptor family member nhr-54|
          Length = 422

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 191 HTRRYGAEVCNRCHTPRKSSNDLQQKGTCTRNRHRWVGREYLGGTPSPEVTGLFCR 24
           H + +G E C  C    + +  L +K  CTR      G+  +G   + +V   FCR
Sbjct: 25  HGQHFGVETCRACAAFFRRTVVLNRKYKCTRKS----GKCKIGSDETKDVMCKFCR 76

>CYCG_RHOS4 (Q53143) Diheme cytochrome c-type|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 164 CNRCHTPRKSSNDLQQKGTCTRNRHRWVGREYLGGTPSPEVTG 36
           C  CHTPR         G   R++ RW     L G P+PE  G
Sbjct: 202 CGECHTPR--------NGLGLRDKSRW-----LAGGPNPEGRG 231

>YBIC_ECOLI (P30178) Hypothetical oxidoreductase ybiC (EC 1.1.1.-)|
          Length = 361

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 172 LKYVTDAILPGKARTTFNKRVPVP 101
           L Y T AI  GK R  ++K VPVP
Sbjct: 179 LDYATSAIAFGKTRVAWHKGVPVP 202

>YBIC_ECO57 (P58409) Hypothetical oxidoreductase ybiC (EC 1.1.1.-)|
          Length = 361

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 172 LKYVTDAILPGKARTTFNKRVPVP 101
           L Y T AI  GK R  ++K VPVP
Sbjct: 179 LDYATSAIAFGKTRVAWHKGVPVP 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,756,895
Number of Sequences: 219361
Number of extensions: 946454
Number of successful extensions: 2393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2392
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)