| Clone Name | basd19o05 |
|---|---|
| Clone Library Name | barley_pub |
>SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) Length = 638 Score = 33.5 bits (75), Expect = 0.64 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Frame = -3 Query: 601 LLDECRPNHPIILVVYLEGGTGGLAGPMNL--GQAKQASAPLCLANECTLCSWSKDEAAT 428 L+DE P+HP++L ++ + P + Q + + LC AN T+C++ +AT Sbjct: 152 LIDERNPDHPVVLNLFGDSHNSSNPAPGSTCNAQGCKVAMRLCSANG-TVCTFRNFTSAT 210 Query: 427 PTSTRW--LMKTN 395 T W L TN Sbjct: 211 QAVTEWYILQATN 223
>LDH_RALEU (Q07251) L-lactate dehydrogenase (EC 1.1.1.27)| Length = 349 Score = 33.5 bits (75), Expect = 0.64 Identities = 20/67 (29%), Positives = 32/67 (47%) Frame = +3 Query: 39 LVGFLGVLSAALGFAAEGTRVKVRSPSHRQFTAHLPPGKPPLLLRFASRVAAVGYAVVAS 218 L+ F V++ A A G RV + + F +P G+PPL++ A+ A+ A V + Sbjct: 134 LLSFTNVINRAPVVAPFGGRVARLTTNPLCFAGPMPNGRPPLVVDIATSAIAINKARVLA 193 Query: 219 RSRHPPP 239 P P Sbjct: 194 EKGEPAP 200
>SCNNB_RABIT (O97742) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) Length = 641 Score = 33.1 bits (74), Expect = 0.84 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Frame = -3 Query: 601 LLDECRPNHPIILVVYLEGGTGGLA---GPMNL--GQAKQASAPLCLANECTLCSWSKDE 437 L+DE P+HP++L ++ TG + GP Q + + LC N T C++ Sbjct: 152 LIDERDPHHPVVLDLFANDPTGSASSSPGPRGACNAQGCKVAMRLCSLNG-TSCTFRNFS 210 Query: 436 AATPTSTRW--LMKTN 395 +AT T W L TN Sbjct: 211 SATQAVTEWYALQATN 226
>SCNNB_MOUSE (Q9WU38) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) Length = 638 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%) Frame = -3 Query: 601 LLDECRPNHPIILVVYLEGGTGGLAGPMNL--GQAKQASAPLCLANECTLCSWSKDEAAT 428 L+DE P+HP++L ++ + P + Q + + LC AN T+C+ +AT Sbjct: 152 LIDERNPDHPVVLNLFGDSHNSSNPAPGSTCNAQGCKVAMRLCSANG-TVCTLRNFTSAT 210 Query: 427 PTSTRW--LMKTN 395 T W L TN Sbjct: 211 QAVTEWYILQATN 223
>AD50_BOVIN (Q27969) Adrenal medulla 50 kDa protein| Length = 532 Score = 31.2 bits (69), Expect = 3.2 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = -3 Query: 553 LEGGTGGLA---GPMNLGQAKQASAPLCLANECTLCSWSKDEAATPTS 419 LEG L+ GP+ + + S P C A LC+W+KD ATPTS Sbjct: 179 LEGQVDSLSVTPGPLGVPEL-MVSQPGC-AYAILLCTWNKDPGATPTS 224
>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d| receptor) (CD21 antigen) Length = 1025 Score = 30.8 bits (68), Expect = 4.2 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Frame = -2 Query: 380 MEDGSIPKLRDRHQHQQSKEQSG*APRNPFDLRASACRACPPAFLVGGWRVTR--STGDH 207 +E S+P + + H Q +Q F S +C P +L+ G + + S+GD Sbjct: 144 LECPSLPTIHNGHHTGQHVDQ--------FVAGLSVTYSCEPGYLLTGKKTIKCLSSGDW 195 Query: 206 RVTNRSNTRSEAKQKGRFPRGEMRCKLTVGRGT 108 + ++ + G+FP G+++ L++ GT Sbjct: 196 DGVIPTCKEAQCEHPGKFPNGQVKEPLSLQVGT 228
>GRIN2_HUMAN (O60269) G protein-regulated inducer of neurite outgrowth 2 (GRIN2)| Length = 458 Score = 29.6 bits (65), Expect = 9.3 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Frame = -2 Query: 413 LANEDKSPNARMEDG----SIPKLR--DRHQHQQSKEQSG*APRNPFDLRASACRACPPA 252 LA ED++ N+ G S+P L D H S + P+ L + C A PPA Sbjct: 176 LAPEDETSNSAWMLGASQLSVPPLDLGDTTAHSSSAQAE---PKAAEQLATTTCHALPPA 232 Query: 251 FLVGGWRVTRSTG 213 L+ G R R+ G Sbjct: 233 ALLCGMREVRAGG 245
>SYFB_RHOS4 (Q3J5M6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 9.3 Identities = 22/61 (36%), Positives = 30/61 (49%) Frame = +3 Query: 33 CALVGFLGVLSAALGFAAEGTRVKVRSPSHRQFTAHLPPGKPPLLLRFASRVAAVGYAVV 212 C F+ +A L F V+V +P + T HL P P LLR A+R A G+A + Sbjct: 516 CVTYSFIDEAAAKL-FGGGSEAVRVENPISSEMT-HLRPDLLPGLLRAAARNQARGFADM 573 Query: 213 A 215 A Sbjct: 574 A 574 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,004,980 Number of Sequences: 219361 Number of extensions: 2381015 Number of successful extensions: 7756 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 7226 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7753 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7026286028 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)