ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subun... 33 0.64
2LDH_RALEU (Q07251) L-lactate dehydrogenase (EC 1.1.1.27) 33 0.64
3SCNNB_RABIT (O97742) Amiloride-sensitive sodium channel beta-sub... 33 0.84
4SCNNB_MOUSE (Q9WU38) Amiloride-sensitive sodium channel beta-sub... 32 1.4
5AD50_BOVIN (Q27969) Adrenal medulla 50 kDa protein 31 3.2
6CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (C... 31 4.2
7GRIN2_HUMAN (O60269) G protein-regulated inducer of neurite outg... 30 9.3
8SYFB_RHOS4 (Q3J5M6) Phenylalanyl-tRNA synthetase beta chain (EC ... 30 9.3

>SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 638

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = -3

Query: 601 LLDECRPNHPIILVVYLEGGTGGLAGPMNL--GQAKQASAPLCLANECTLCSWSKDEAAT 428
           L+DE  P+HP++L ++ +        P +    Q  + +  LC AN  T+C++    +AT
Sbjct: 152 LIDERNPDHPVVLNLFGDSHNSSNPAPGSTCNAQGCKVAMRLCSANG-TVCTFRNFTSAT 210

Query: 427 PTSTRW--LMKTN 395
              T W  L  TN
Sbjct: 211 QAVTEWYILQATN 223



to top

>LDH_RALEU (Q07251) L-lactate dehydrogenase (EC 1.1.1.27)|
          Length = 349

 Score = 33.5 bits (75), Expect = 0.64
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +3

Query: 39  LVGFLGVLSAALGFAAEGTRVKVRSPSHRQFTAHLPPGKPPLLLRFASRVAAVGYAVVAS 218
           L+ F  V++ A   A  G RV   + +   F   +P G+PPL++  A+   A+  A V +
Sbjct: 134 LLSFTNVINRAPVVAPFGGRVARLTTNPLCFAGPMPNGRPPLVVDIATSAIAINKARVLA 193

Query: 219 RSRHPPP 239
               P P
Sbjct: 194 EKGEPAP 200



to top

>SCNNB_RABIT (O97742) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 641

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
 Frame = -3

Query: 601 LLDECRPNHPIILVVYLEGGTGGLA---GPMNL--GQAKQASAPLCLANECTLCSWSKDE 437
           L+DE  P+HP++L ++    TG  +   GP      Q  + +  LC  N  T C++    
Sbjct: 152 LIDERDPHHPVVLDLFANDPTGSASSSPGPRGACNAQGCKVAMRLCSLNG-TSCTFRNFS 210

Query: 436 AATPTSTRW--LMKTN 395
           +AT   T W  L  TN
Sbjct: 211 SATQAVTEWYALQATN 226



to top

>SCNNB_MOUSE (Q9WU38) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 638

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -3

Query: 601 LLDECRPNHPIILVVYLEGGTGGLAGPMNL--GQAKQASAPLCLANECTLCSWSKDEAAT 428
           L+DE  P+HP++L ++ +        P +    Q  + +  LC AN  T+C+     +AT
Sbjct: 152 LIDERNPDHPVVLNLFGDSHNSSNPAPGSTCNAQGCKVAMRLCSANG-TVCTLRNFTSAT 210

Query: 427 PTSTRW--LMKTN 395
              T W  L  TN
Sbjct: 211 QAVTEWYILQATN 223



to top

>AD50_BOVIN (Q27969) Adrenal medulla 50 kDa protein|
          Length = 532

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 553 LEGGTGGLA---GPMNLGQAKQASAPLCLANECTLCSWSKDEAATPTS 419
           LEG    L+   GP+ + +    S P C A    LC+W+KD  ATPTS
Sbjct: 179 LEGQVDSLSVTPGPLGVPEL-MVSQPGC-AYAILLCTWNKDPGATPTS 224



to top

>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d|
           receptor) (CD21 antigen)
          Length = 1025

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = -2

Query: 380 MEDGSIPKLRDRHQHQQSKEQSG*APRNPFDLRASACRACPPAFLVGGWRVTR--STGDH 207
           +E  S+P + + H   Q  +Q        F    S   +C P +L+ G +  +  S+GD 
Sbjct: 144 LECPSLPTIHNGHHTGQHVDQ--------FVAGLSVTYSCEPGYLLTGKKTIKCLSSGDW 195

Query: 206 RVTNRSNTRSEAKQKGRFPRGEMRCKLTVGRGT 108
                +   ++ +  G+FP G+++  L++  GT
Sbjct: 196 DGVIPTCKEAQCEHPGKFPNGQVKEPLSLQVGT 228



to top

>GRIN2_HUMAN (O60269) G protein-regulated inducer of neurite outgrowth 2 (GRIN2)|
          Length = 458

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = -2

Query: 413 LANEDKSPNARMEDG----SIPKLR--DRHQHQQSKEQSG*APRNPFDLRASACRACPPA 252
           LA ED++ N+    G    S+P L   D   H  S +     P+    L  + C A PPA
Sbjct: 176 LAPEDETSNSAWMLGASQLSVPPLDLGDTTAHSSSAQAE---PKAAEQLATTTCHALPPA 232

Query: 251 FLVGGWRVTRSTG 213
            L+ G R  R+ G
Sbjct: 233 ALLCGMREVRAGG 245



to top

>SYFB_RHOS4 (Q3J5M6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 805

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +3

Query: 33  CALVGFLGVLSAALGFAAEGTRVKVRSPSHRQFTAHLPPGKPPLLLRFASRVAAVGYAVV 212
           C    F+   +A L F      V+V +P   + T HL P   P LLR A+R  A G+A +
Sbjct: 516 CVTYSFIDEAAAKL-FGGGSEAVRVENPISSEMT-HLRPDLLPGLLRAAARNQARGFADM 573

Query: 213 A 215
           A
Sbjct: 574 A 574


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,004,980
Number of Sequences: 219361
Number of extensions: 2381015
Number of successful extensions: 7756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7753
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7026286028
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top