>YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P11E10.02c|
           precursor
          Length = 1082

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
 Frame = -3

Query: 353 PFEFSFPWNAPSFPIFSSLQTSSLSAGG*CFLYNSPL*SFTVKASVFASLIRIPSQNPEE 174
           P   S   ++ SF  FSSL +S LS             +FT  +S  +      S +   
Sbjct: 493 PVNSSLVTSSTSFTKFSSLSSSQLSTE-----------NFTSASSSLSLTNAKSSLSTPS 541

Query: 173 TLIPSLNFLLLIQLELSVKISSPMVPTPSLSVTWISP-FKRGLFPSRSFTMGSQIASS 3
           T IP+ N  + +Q   S+ ISSP++ +   + +  +P     + PS +    S I SS
Sbjct: 542 TTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSITPSNTSYTSSLIPSS 599

>CADN_DROME (O15943) Neural-cadherin precursor (Cadherin-N protein) (DN-cadherin)|
          Length = 3097

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +1

Query: 220  EAFTVKDHRGELYKKHYPPALKDDVWRLEKIGKDGAFHGKLNSNGIYTVEHFLQLLVKDQ 399
            E F +    GE++ K      K   + LE   +DGA   + NSNG  +V  F+++ + D+
Sbjct: 1348 EFFEINLQSGEIFTKTVFDREKKGAYALEVEARDGAPSARPNSNGPNSVTKFIRIGIADK 1407

>MURE_BACHD (Q9K9S4) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 486

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 334 GKLNSNGIYTVEHFLQLLVKDQQKLRSILGTGMSNKMWESLVEHAKT 474
           G   +NG  T+ H ++ +++DQ K+  ++GT M  K+   L E   T
Sbjct: 106 GVTGTNGKTTITHLIEKIMQDQGKMTGLIGT-MYTKIGHELKETKNT 151

>EXT2_DROME (Q9Y169) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (Protein sister|
           of tout-velu)
          Length = 717

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 292 VWRLEKIGKDGAFHGKLNSNG-IYTVEHFLQLLVKDQQKLRS 414
           +W L    +DG FHGK +S+  I  +EH  +L V  + + R+
Sbjct: 46  LWDLSSSPRDGFFHGKRDSHTLILDLEHIQELAVNPEAEQRA 87

>RRPL_RVFVZ (P27316) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)|
          Length = 2149

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
 Frame = +1

Query: 28   VKEREGK---------RPLLNGDIHVTLKE--GVGTIGELIFTDNSSWIRSRKFRLGMRV 174
            +KE +GK         +  L+GD  V + E  G GT+G  I    S  ++++    G+ +
Sbjct: 1674 IKESDGKTKTNLIGILQRFLDGDHVVPIIEEMGAGTVGGFIKRQQSKVVQNKVVYYGVGI 1733

Query: 175  SSGFCDGIRI 204
              GF DG ++
Sbjct: 1734 WRGFMDGYQV 1743

>RNY1_EMENI (Q5B3K6) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase|
           T2-like)
          Length = 417

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 163 GMRVSSGFCDGIRIKEAKTEAFTVKDHRGELYKKHYPPALKDDVWR----LEKIGKDGAF 330
           G   SSG C   R K A  + FT+   +G       P A KDD++     +    +  A 
Sbjct: 322 GTWYSSGTCADFRAKRASGDTFTLSSRKG-------PCAFKDDIFTCGSYISSPAEFSAE 374

Query: 331 HGKLNSNG 354
            GKL+ +G
Sbjct: 375 DGKLSYHG 382

>MYFC_YEREN (P33408) Outer membrane usher protein myfC precursor|
          Length = 841

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 61  NGDIHVTLKEGVGTIGELIFTDNSSWIRSRKFRLGMRVSSG 183
           NGD+HVT+ E  GT  +     +   IR RK RL   + +G
Sbjct: 329 NGDLHVTVLESNGTTQQFTVPYSVPAIRLRKGRLRYNLMAG 369

>IL3_HYLLA (P06740) Interleukin-3 precursor (IL-3) (Multipotential|
           colony-stimulating factor) (Hematopoietic growth factor)
           (P-cell-stimulating factor) (Mast-cell growth factor)
           (MCGF)
          Length = 152

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 158 LNFLLLIQLELSVKISSPMVPTPSLSVTWIS 66
           L  LLL+QL +S  + +PM  T SL  +W++
Sbjct: 4   LPVLLLLQLLVSPGLQAPMTQTTSLKTSWVN 34

>MURE_LACPL (Q88Y23) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 493

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 334 GKLNSNGIYTVEHFLQLLVKDQQKLRSILGTGMSNKMWESLVEHAKT 474
           G   +NG  TV H ++ + +DQQ+   ++GT M  K+ +  +  A T
Sbjct: 107 GVTGTNGKTTVTHLIEQIYRDQQQATGLIGT-MYRKIKDEKLPTANT 152

>ZN75A_HUMAN (Q96N20) Zinc finger protein 75A|
          Length = 296

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 H*QFQLDKEQKIQTWDESLFRIL*RNSYQRGEDRGFYCE 236
           H  F + K +K+ TW + L +++ R+      ++ F C+
Sbjct: 126 HQDFPVKKRKKLSTWKQELLKLMDRHKKDCAREKPFKCQ 164

>FUT8_BOVIN (Q9N0W2) Alpha-(1,6)-fucosyltransferase (EC 2.4.1.68) (Glycoprotein|
           6-alpha-L-fucosyltransferase) (GDP-fucose--glycoprotein
           fucosyltransferase)
           (GDP-L-Fuc:N-acetyl-beta-D-glucosaminide
           alpha1,6-fucosyltransferase) (alpha1-6FucT)
           (Fucosyltransf
          Length = 575

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 274 PALKDDVWRLEKIGKDGAFHGKLNSNGIYTVEHFLQLLVKDQQ--KLRSILGTGMSNKMW 447
           P +   V R +K+G + AFH  +    ++  EHF QLL +  Q  K R  L T       
Sbjct: 358 PVIGVHVRRTDKVGTEAAFH-PIEEYMVHVEEHF-QLLARRMQVDKKRVYLATDD----- 410

Query: 448 ESLVEHAKTCVLSGKHYIYYSKDTAS 525
            SL++ AKT      HY + S ++ S
Sbjct: 411 PSLLKEAKT---KYPHYEFISDNSIS 433

>CYLD_MOUSE (Q80TQ2) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC|
           3.1.2.15) (Ubiquitin thioesterase CYLD) (Ubiquitin
           specific-processing protease CYLD) (Deubiquitinating
           enzyme CYLD)
          Length = 952

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 245 EENCTRNITLLRLRMMFGDWKRLERTVHSTGN*TQTESIQLNIFFNFLLKINRS*EVSLV 424
           +E+C   + L +L ++  D   LE      G+  Q E   L I     LK+  S E   V
Sbjct: 190 DEDCGVFVALDKLELIEDDDNGLESDFAGPGDTMQVEPPPLEINSRVSLKVGESTESGTV 249

Query: 425 LACQIRCGK 451
           + C +  GK
Sbjct: 250 IFCDVLPGK 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,507,942
Number of Sequences: 219361
Number of extensions: 1494853
Number of successful extensions: 4087
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4083
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)