>APTH1_USTMA (Q4PID3) Acyl-protein thioesterase 1 (EC 3.1.2.-)|
          Length = 240

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -3

Query: 326 LTSPEMLATYWALR-WMPLALVKATPLMSSTTRVTALTGLRSPTARWLKVFQMKAEASER 150
           LT+P  +A   AL  W+PL    AT              LR+PT++ LKVFQ   +A   
Sbjct: 140 LTNPTPVAGVAALSTWLPLRAKIAT--------------LRTPTSKTLKVFQAHGDADPV 185

Query: 149 TFLEYGRPT 123
              EYG+ T
Sbjct: 186 VKYEYGQRT 194

>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/35 (51%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 516 RRDVVPLIPPVSLPRLHPVPRREP-GLEPHVVGDP 415
           RRD  P  PP  LPR  P P   P GLEP V   P
Sbjct: 40  RRDCRPPPPPTGLPRGPPPPPSPPRGLEPPVASGP 74

>PDC1_PEA (P51850) Pyruvate decarboxylase isozyme 1 (EC 4.1.1.1) (PDC)|
          Length = 593

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 239 TTRVTALTGLRSPTARWLKVFQMKAEASERTFLEYGRPTACSNSRPP 99
           T  +   TG    +  +++VF  K + S+   LE+G   A +NSRPP
Sbjct: 545 TEAIATATGAEKDSLCFIEVFAHKDDTSKE-LLEWGSRVAAANSRPP 590

>UVRA_STRAW (Q829X3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
            subunit A)
          Length = 1009

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 627  VLAENLREEVVGVPTLHLGVELR---DEPGLQ*VAVVEEPRR 511
            V+AE   EEV GVPT H G  LR   D   +   A V+ PR+
Sbjct: 919  VVAEGTPEEVAGVPTSHTGKFLREILDADRISDAASVKAPRK 960

>CNGC5_ARATH (Q8RWS9) Probable cyclic nucleotide-gated ion channel 5 (AtCNGC5)|
           (Cyclic nucleotide- and calmodulin-regulated ion channel
           5)
          Length = 717

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 531 LRLTEARVRRAAQRQDEEWVHRRLLRADSRQ 623
           +RL E RV+R   R  E+W+H R+L  D R+
Sbjct: 424 IRLEEMRVKR---RDSEQWMHHRMLPQDLRE 451

>OXAA_BUCAI (P57131) Membrane protein oxaA|
          Length = 532

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 311 MLATYWALRWMPLALVKATPLMSSTTRVTALTGLRSP 201
           ML  Y+A+ W+P  L K T   SS    TA+ G +SP
Sbjct: 247 MLQQYFAVAWIPDNLGKNTIYTSSLDHDTAVIGYKSP 283

>SYY_ZYMMO (Q5NLZ3) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 409

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 109 LFEQAVGLPYSKKVLSEASAFIWKTFNQRAVGDRKPVNAVT 231
           L  +A  L + +K   EA+A   KTF + A GD  PV  V+
Sbjct: 302 LANEATKLAHGEKAAEEAAATAKKTFEEGAAGDALPVMKVS 342

>UVRA_STRCO (Q9Z507) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
            subunit A)
          Length = 1014

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 627  VLAENLREEVVGVPTLHLGVELRDEPGLQ*V---AVVEEPRR 511
            V+AE   E+V GVP  H G  LRD  G   V   A V  PR+
Sbjct: 919  VVAEGTPEQVAGVPASHTGKFLRDVLGADRVSDAAPVTRPRK 960

>YCF2_LYCES (P61242) Protein ycf2|
          Length = 2278

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 383  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 258
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1006 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1046

>YCF2B_ATRBE (Q8S8U1) Protein ycf2|
          Length = 2291

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 383  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 258
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1013 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1053

>YCF2A_ATRBE (Q8S8V2) Protein ycf2|
          Length = 2291

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 383  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 258
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1013 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1053

>YCF2_TOBAC (P09976) Protein ycf2|
          Length = 2280

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 383  PFHCHTCVASWYSTPVTSFLTSPEMLATYWALRWMPLALVKA 258
            PFH  + ++S+Y      FL +P     YW  R+ P ++ KA
Sbjct: 1005 PFHRSSLISSFYKANRLRFLNNPHHFCFYWNTRF-PFSVEKA 1045

>DHX34_MOUSE (Q9DBV3) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-) (DEAH|
            box protein 34)
          Length = 1145

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 494  SHRSPCPGFTQCPGANPALSRT*SAIPSMSPPFALPCPFHCHTCVASWYSTP 339
            +H + CP   + PG +P       A P  +   AL  P+HC  C   +  TP
Sbjct: 1088 AHENTCP---EAPGDDPGSEEAAPAPPQKTS--ALQRPYHCQVCGQDFLFTP 1134


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,148,672
Number of Sequences: 219361
Number of extensions: 1334876
Number of successful extensions: 5575
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5552
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)