| Clone Name | basd19m06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein (wrsi5-1) mRNA, complete cds Length = 608 Score = 585 bits (295), Expect = e-164 Identities = 407/442 (92%), Gaps = 3/442 (0%) Strand = Plus / Plus Query: 1 ccgcacaggtaaagctcgagctttgcgctaagagagttcatcggcagccatgaagagcac 60 |||||||||| ||| |||||||||||||| || ||||||| ||| |||||||||||| Sbjct: 39 ccgcacaggtgaagtgagagctttgcgctaa-agggttcatcagcaagcatgaagagcac 97 Query: 61 caagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcccacgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 98 caagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcacacgt 157 Query: 121 taacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgt 180 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 158 gaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctccggggtcgacgt 217 Query: 181 ctgcgacgacgcccacccccagtgccccaagggctgctccgcctgccgcgtggtgacccc 240 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 218 ctgcgacgacgcccacccccagtgccccaagggctgctcggcctgccgcgtggtgacgcc 277 Query: 241 gagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcgacggcacctgcgg 300 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 278 cagccctcacaagacgttccggtgcgccgacatgaagagcaccgtcgatggcacctgcgg 337 Query: 301 tggcccatgcaaaaagcactgatcgcttcagggcttcaggctcggacgaggtgtgccgcc 360 || |||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||| Sbjct: 338 cgggccatgcaaaaagcactgatccgttcagggcttcagtctcagacgaggggtgccgcc 397 Query: 361 tagaataaagctcagatgagatgagcagtcatcgtgttgctatgtttgtgtgtgggccgt 420 || ||||||||||||||||||||||||||||| | | ||||| || | |||||| ||| Sbjct: 398 taaaataaagctcagatgagatgagcagtcatggcg--cctatgcttctctgtgggtcgt 455 Query: 421 gctacacggccaacaatatgta 442 |||| ||||||||||||||||| Sbjct: 456 gctatacggccaacaatatgta 477
>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor Length = 498 Score = 315 bits (159), Expect = 9e-83 Identities = 257/289 (88%), Gaps = 3/289 (1%) Strand = Plus / Plus Query: 39 catcggcagccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctgg 98 |||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1 catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60 Query: 99 tcatggggatcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgca 158 ||||||| ||||||| ||||| ||||||| || ||||||| ||||||||||||||||| Sbjct: 61 tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120 Query: 159 ggtccttctcgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgct 218 |||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180 Query: 219 ccgcctgccgcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaaga 278 | || ||||||||||||||| ||| ||| | ||||||||||||||||||||||||| Sbjct: 181 cggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatgaaag 237 Query: 279 gcaccgtcgacggcacctgcggtggcccatgcaaaaagcactgatcgct 327 ||||||||||||||||||||| || |||||||| ||| |||||||||| Sbjct: 238 ccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatcgct 286
>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA, complete cds Length = 520 Score = 295 bits (149), Expect = 8e-77 Identities = 250/283 (88%), Gaps = 3/283 (1%) Strand = Plus / Plus Query: 48 ccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggga 107 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 ccatgaagggcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggac 130 Query: 108 tcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttct 167 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 131 tcctctcacacgtgaacgccgattttttccccaagtgctgcaacaactgcaggtccttct 190 Query: 168 cgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgctccgcctgcc 227 |||||||||||||||||||||||||||||||| |||| ||| |||||||||| || |||| Sbjct: 191 cgggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggctgctcggcgtgcc 250 Query: 228 gcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcg 287 |||||||| | ||||||| | | | || |||||||| || ||||| |||||||| Sbjct: 251 gcgtggtgtcgacgagccc---cgaaatgtggcgctgcgcggatatgaaatccaccgtcg 307 Query: 288 acggcacctgcggtggcccatgcaaaaagcactgatcgcttca 330 |||||||||||||||| || ||||| ||| |||||||| |||| Sbjct: 308 acggcacctgcggtggaccctgcaagaagtactgatcggttca 350 Score = 77.8 bits (39), Expect = 3e-11 Identities = 45/47 (95%) Strand = Plus / Plus Query: 452 tcgtcactgtgttttctctctcgagaaaaagctggtgttgcttgttg 498 ||||| ||||||||||||||||||||||||| ||||||||||||||| Sbjct: 467 tcgtcgctgtgttttctctctcgagaaaaagttggtgttgcttgttg 513
>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds Length = 585 Score = 117 bits (59), Expect = 4e-23 Identities = 133/157 (84%), Gaps = 3/157 (1%) Strand = Plus / Plus Query: 50 atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatc 109 |||||||| | || ||||| |||||||||||| ||||||||||||||||||||||| ||| Sbjct: 76 atgaagagtagcacgctcgtggcgatcctgattctccaggccgtcctggtcatgggaatc 135 Query: 110 ctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcg 169 ||||| || | |||||||| ||||| || |||||| |||||||||||| ||||||| Sbjct: 136 ctctcacaggcgaacgccga---gttcccgaaatgctgcgacaactgcaggttcttctcg 192 Query: 170 ggggtcgacgtctgcgacgacgcccacccccagtgcc 206 |||| || ||||||||||||||| |||| |||||| Sbjct: 193 ggggccgtggtctgcgacgacgccggccccaagtgcc 229
>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA, complete cds Length = 564 Score = 109 bits (55), Expect = 1e-20 Identities = 114/133 (85%), Gaps = 3/133 (2%) Strand = Plus / Plus Query: 74 atcctgatcctccaggccgtcctggtcatggggatcctctcccacgttaacgccgacttc 133 ||||||||||| |||||||||||||||||||| |||||||| || | |||||||| ||| Sbjct: 79 atcctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccgagttc 138 Query: 134 ttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacgacgcc 193 |||||||||||| |||||||||||| ||||||||||| || |||||||| |||||| Sbjct: 139 ---cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195 Query: 194 cacccccagtgcc 206 |||| |||||| Sbjct: 196 ggccccaagtgcc 208
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 47 gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 106 ||||||||||||| || |||| || ||||||| | |||||||||||||||||||||||| Sbjct: 1757733 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 1757674 Query: 107 at 108 || Sbjct: 1757673 at 1757672
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 47 gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 106 ||||||||||||| || |||| || ||||||| | |||||||||||||||||||||||| Sbjct: 100076 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 100017 Query: 107 at 108 || Sbjct: 100016 at 100015
>ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 306 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 50 atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggat 108 |||||||||| || |||| || ||||||| | |||||||||||||||||||||||||| Sbjct: 1 atgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatggggat 59
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 81 tcctccaggccgtcctggtcatggggatcctctccc 116 ||||||||||| ||||||||||||| |||||||||| Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctccc 71845
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 93 tcctggtcatggggatcctctcc 115 ||||||||||||||||||||||| Sbjct: 25930562 tcctggtcatggggatcctctcc 25930540
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 93 tcctggtcatggggatcctctcc 115 ||||||||||||||||||||||| Sbjct: 85660 tcctggtcatggggatcctctcc 85638
>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full insert sequence Length = 2261 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 93 tcctggtcatggggatcctctcc 115 ||||||||||||||||||||||| Sbjct: 818 tcctggtcatggggatcctctcc 840
>emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on chromosome 10 Contains a novel gene, complete sequence Length = 118034 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 agctggtgttgcttgttgaat 501 ||||||||||||||||||||| Sbjct: 45458 agctggtgttgcttgttgaat 45438
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 68 gcggcgatcctgatcctccaggccg 92 |||||||||||||||||||| |||| Sbjct: 1946744 gcggcgatcctgatcctccacgccg 1946720
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 tgaagagcaccgtcgacggca 293 ||||||||||||||||||||| Sbjct: 634902 tgaagagcaccgtcgacggca 634922
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caagtgctgcaacaactgca 158 |||||||||||||||||||| Sbjct: 2027891 caagtgctgcaacaactgca 2027872
>ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA Length = 2659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gcaccgtcgacggcacctgc 298 |||||||||||||||||||| Sbjct: 1408 gcaccgtcgacggcacctgc 1389
>gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, complete sequence Length = 204367 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 tgttgctatgtttgtgtgtg 414 |||||||||||||||||||| Sbjct: 91892 tgttgctatgtttgtgtgtg 91873
>ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM01964.1) partial mRNA Length = 1812 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 ggcagccatgaagagcacca 62 |||||||||||||||||||| Sbjct: 267 ggcagccatgaagagcacca 248
>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence Length = 184556 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 ggtgttgcttgttgaataaa 504 |||||||||||||||||||| Sbjct: 83198 ggtgttgcttgttgaataaa 83217
>ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c), mRNA Length = 2214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gcaccgtcgacggcacctgc 298 |||||||||||||||||||| Sbjct: 1156 gcaccgtcgacggcacctgc 1137
>gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA clone MGC:136662 IMAGE:8000407), complete cds Length = 2659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gcaccgtcgacggcacctgc 298 |||||||||||||||||||| Sbjct: 1408 gcaccgtcgacggcacctgc 1389
>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162004 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 agctcagatgagatgagcag 388 |||||||||||||||||||| Sbjct: 86131 agctcagatgagatgagcag 86150
>ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572763), partial mRNA Length = 240 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gcaccgtcgacggcacctgc 298 |||||||||||||||||||| Sbjct: 136 gcaccgtcgacggcacctgc 117
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tgcggtggcccatgcaaaaa 315 |||||||||||||||||||| Sbjct: 1357655 tgcggtggcccatgcaaaaa 1357636
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gttccgctgcgccgacatga 275 |||||||||||||||||||| Sbjct: 807673 gttccgctgcgccgacatga 807692
>dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, map 22, complete sequences Length = 168017 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 acgcccacccccagtgcccc 208 |||||||||||||||||||| Sbjct: 156620 acgcccacccccagtgcccc 156639
>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF), panthotenate metabolism flavoprotein (dfp), deoxyuridine-triphosphatase (dut), putative sensor protein (bdfA), GalF-like (galF), hypothetical protein genes, complete cds; putative helicase 2 gene, partial cds; and unknown genes Length = 13289 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 gttccgctgcgccgacatga 275 |||||||||||||||||||| Sbjct: 8366 gttccgctgcgccgacatga 8347
>emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-109N16, complete sequence Length = 190477 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 acgcccacccccagtgcccc 208 |||||||||||||||||||| Sbjct: 61446 acgcccacccccagtgcccc 61465
>gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds Length = 2214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 gcaccgtcgacggcacctgc 298 |||||||||||||||||||| Sbjct: 1156 gcaccgtcgacggcacctgc 1137
>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364 Length = 526707 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 cagccatgaagagcaccaagctcg 68 ||||||||||||| |||||||||| Sbjct: 158311 cagccatgaagaggaccaagctcg 158334
>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence Length = 179548 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 507 cctctgatggttgtgcgtgt 526 |||||||||||||||||||| Sbjct: 135462 cctctgatggttgtgcgtgt 135481
>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete sequence Length = 209737 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tgtttgtgtgtgggccgtgc 422 |||||||||||||||||||| Sbjct: 97290 tgtttgtgtgtgggccgtgc 97271
>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete sequence Length = 194554 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tgtttgtgtgtgggccgtgc 422 |||||||||||||||||||| Sbjct: 8226 tgtttgtgtgtgggccgtgc 8245 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,427,721 Number of Sequences: 3902068 Number of extensions: 4427721 Number of successful extensions: 92048 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91715 Number of HSP's gapped (non-prelim): 329 length of query: 560 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 537 effective length of database: 17,143,297,704 effective search space: 9205950867048 effective search space used: 9205950867048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)