ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-r... 585 e-164
2emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease in... 315 9e-83
3gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown funct... 295 8e-77
4gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds 117 4e-23
5gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown funct... 109 1e-20
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
7dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
8ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
9gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sa... 56 1e-04
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
11dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
12dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.12
13emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on ch... 42 1.9
14gb|CP000133.1| Rhizobium etli CFN 42, complete genome 42 1.9
15gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequ... 42 1.9
16gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.6
17ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA 40 7.6
18gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, com... 40 7.6
19ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM019... 40 7.6
20gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, compl... 40 7.6
21ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c),... 40 7.6
22gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA c... 40 7.6
23gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park C... 40 7.6
24ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572... 40 7.6
25dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.6
26dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 7.6
27dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, ... 40 7.6
28gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene... 40 7.6
29emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-1... 40 7.6
30gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds 40 7.6
31emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain... 40 7.6
32gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, comple... 40 7.6
33gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone ... 40 7.6
34emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chr... 40 7.6

>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein
           (wrsi5-1) mRNA, complete cds
          Length = 608

 Score =  585 bits (295), Expect = e-164
 Identities = 407/442 (92%), Gaps = 3/442 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgcacaggtaaagctcgagctttgcgctaagagagttcatcggcagccatgaagagcac 60
           |||||||||| |||   |||||||||||||| || ||||||| |||  ||||||||||||
Sbjct: 39  ccgcacaggtgaagtgagagctttgcgctaa-agggttcatcagcaagcatgaagagcac 97

                                                                       
Query: 61  caagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcccacgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 98  caagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatcctctcacacgt 157

                                                                       
Query: 121 taacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgt 180
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 158 gaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctccggggtcgacgt 217

                                                                       
Query: 181 ctgcgacgacgcccacccccagtgccccaagggctgctccgcctgccgcgtggtgacccc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 218 ctgcgacgacgcccacccccagtgccccaagggctgctcggcctgccgcgtggtgacgcc 277

                                                                       
Query: 241 gagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcgacggcacctgcgg 300
            |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 278 cagccctcacaagacgttccggtgcgccgacatgaagagcaccgtcgatggcacctgcgg 337

                                                                       
Query: 301 tggcccatgcaaaaagcactgatcgcttcagggcttcaggctcggacgaggtgtgccgcc 360
            || ||||||||||||||||||||  ||||||||||||| ||| ||||||| ||||||||
Sbjct: 338 cgggccatgcaaaaagcactgatccgttcagggcttcagtctcagacgaggggtgccgcc 397

                                                                       
Query: 361 tagaataaagctcagatgagatgagcagtcatcgtgttgctatgtttgtgtgtgggccgt 420
           || ||||||||||||||||||||||||||||| | |   ||||| || | |||||| |||
Sbjct: 398 taaaataaagctcagatgagatgagcagtcatggcg--cctatgcttctctgtgggtcgt 455

                                 
Query: 421 gctacacggccaacaatatgta 442
           |||| |||||||||||||||||
Sbjct: 456 gctatacggccaacaatatgta 477



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>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor
          Length = 498

 Score =  315 bits (159), Expect = 9e-83
 Identities = 257/289 (88%), Gaps = 3/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 39  catcggcagccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctgg 98
           |||| ||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1   catcagcaaccatgaagggcaccaagctcgcggcgattctgatcctccaggccgtcctgg 60

                                                                       
Query: 99  tcatggggatcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgca 158
           |||||||  ||||||| ||||| ||||||| ||  ||||||| |||||||||||||||||
Sbjct: 61  tcatgggagtcctctcgcacgtgaacgccgtctatttccccacgtgctgcaacaactgca 120

                                                                       
Query: 159 ggtccttctcgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgct 218
           |||||||||| |||||||||||||||||||||||||| || ||||||||||  |||||||
Sbjct: 121 ggtccttctccggggtcgacgtctgcgacgacgcccatccgcagtgccccaccggctgct 180

                                                                       
Query: 219 ccgcctgccgcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaaga 278
           | || ||||||||||||||| ||| |||   | |||||||||||||||||||||||||  
Sbjct: 181 cggcgtgccgcgtggtgaccacgaaccc---ccagacgttccgctgcgccgacatgaaag 237

                                                            
Query: 279 gcaccgtcgacggcacctgcggtggcccatgcaaaaagcactgatcgct 327
            ||||||||||||||||||||| || |||||||| ||| ||||||||||
Sbjct: 238 ccaccgtcgacggcacctgcggcgggccatgcaagaagtactgatcgct 286



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>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA,
           complete cds
          Length = 520

 Score =  295 bits (149), Expect = 8e-77
 Identities = 250/283 (88%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 48  ccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggga 107
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 71  ccatgaagggcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggac 130

                                                                       
Query: 108 tcctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttct 167
           ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 131 tcctctcacacgtgaacgccgattttttccccaagtgctgcaacaactgcaggtccttct 190

                                                                       
Query: 168 cgggggtcgacgtctgcgacgacgcccacccccagtgccccaagggctgctccgcctgcc 227
           |||||||||||||||||||||||||||||||| |||| ||| |||||||||| || ||||
Sbjct: 191 cgggggtcgacgtctgcgacgacgcccaccccaagtgtccccagggctgctcggcgtgcc 250

                                                                       
Query: 228 gcgtggtgaccccgagccctcacaagacgttccgctgcgccgacatgaagagcaccgtcg 287
           |||||||| |  |||||||   | | | ||  |||||||| || |||||   ||||||||
Sbjct: 251 gcgtggtgtcgacgagccc---cgaaatgtggcgctgcgcggatatgaaatccaccgtcg 307

                                                      
Query: 288 acggcacctgcggtggcccatgcaaaaagcactgatcgcttca 330
           |||||||||||||||| || ||||| ||| |||||||| ||||
Sbjct: 308 acggcacctgcggtggaccctgcaagaagtactgatcggttca 350



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                          
Query: 452 tcgtcactgtgttttctctctcgagaaaaagctggtgttgcttgttg 498
           ||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 467 tcgtcgctgtgttttctctctcgagaaaaagttggtgttgcttgttg 513



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>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds
          Length = 585

 Score =  117 bits (59), Expect = 4e-23
 Identities = 133/157 (84%), Gaps = 3/157 (1%)
 Strand = Plus / Plus

                                                                       
Query: 50  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggatc 109
           |||||||| | || ||||| |||||||||||| ||||||||||||||||||||||| |||
Sbjct: 76  atgaagagtagcacgctcgtggcgatcctgattctccaggccgtcctggtcatgggaatc 135

                                                                       
Query: 110 ctctcccacgttaacgccgacttcttccccaagtgctgcaacaactgcaggtccttctcg 169
           ||||| || |  ||||||||    ||||| || |||||| |||||||||||| |||||||
Sbjct: 136 ctctcacaggcgaacgccga---gttcccgaaatgctgcgacaactgcaggttcttctcg 192

                                                
Query: 170 ggggtcgacgtctgcgacgacgcccacccccagtgcc 206
           |||| ||  |||||||||||||||  |||| ||||||
Sbjct: 193 ggggccgtggtctgcgacgacgccggccccaagtgcc 229



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>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA,
           complete cds
          Length = 564

 Score =  109 bits (55), Expect = 1e-20
 Identities = 114/133 (85%), Gaps = 3/133 (2%)
 Strand = Plus / Plus

                                                                       
Query: 74  atcctgatcctccaggccgtcctggtcatggggatcctctcccacgttaacgccgacttc 133
           ||||||||||| |||||||||||||||||||| |||||||| || |  |||||||| |||
Sbjct: 79  atcctgatccttcaggccgtcctggtcatgggaatcctctcacaggcgaacgccgagttc 138

                                                                       
Query: 134 ttccccaagtgctgcaacaactgcaggtccttctcgggggtcgacgtctgcgacgacgcc 193
              |||||||||||| |||||||||||| ||||||||||| ||  |||||||| ||||||
Sbjct: 139 ---cccaagtgctgcgacaactgcaggttcttctcgggggccgtggtctgcgatgacgcc 195

                        
Query: 194 cacccccagtgcc 206
             |||| ||||||
Sbjct: 196 ggccccaagtgcc 208



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                           
Query: 47      gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 106
               ||||||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||
Sbjct: 1757733 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 1757674

                 
Query: 107     at 108
               ||
Sbjct: 1757673 at 1757672



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>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0504H10
          Length = 143515

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 47     gccatgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatgggg 106
              ||||||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||
Sbjct: 100076 gccatgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatgggg 100017

                
Query: 107    at 108
              ||
Sbjct: 100016 at 100015



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>ref|NM_184249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 306

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 50  atgaagagcaccaagctcgcggcgatcctgatcctccaggccgtcctggtcatggggat 108
           |||||||||| || ||||  || ||||||| | ||||||||||||||||||||||||||
Sbjct: 1   atgaagagcagcacgctcatggtgatcctggttctccaggccgtcctggtcatggggat 59



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>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                                 
Query: 81    tcctccaggccgtcctggtcatggggatcctctccc 116
             ||||||||||| ||||||||||||| ||||||||||
Sbjct: 71810 tcctccaggccatcctggtcatgggaatcctctccc 71845



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 93       tcctggtcatggggatcctctcc 115
                |||||||||||||||||||||||
Sbjct: 25930562 tcctggtcatggggatcctctcc 25930540



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>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 93    tcctggtcatggggatcctctcc 115
             |||||||||||||||||||||||
Sbjct: 85660 tcctggtcatggggatcctctcc 85638



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>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full
           insert sequence
          Length = 2261

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 93  tcctggtcatggggatcctctcc 115
           |||||||||||||||||||||||
Sbjct: 818 tcctggtcatggggatcctctcc 840



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>emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 118034

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 481   agctggtgttgcttgttgaat 501
             |||||||||||||||||||||
Sbjct: 45458 agctggtgttgcttgttgaat 45438



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 68      gcggcgatcctgatcctccaggccg 92
               |||||||||||||||||||| ||||
Sbjct: 1946744 gcggcgatcctgatcctccacgccg 1946720



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>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence
          Length = 642517

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 273    tgaagagcaccgtcgacggca 293
              |||||||||||||||||||||
Sbjct: 634902 tgaagagcaccgtcgacggca 634922



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 139     caagtgctgcaacaactgca 158
               ||||||||||||||||||||
Sbjct: 2027891 caagtgctgcaacaactgca 2027872



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>ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA
          Length = 2659

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  gcaccgtcgacggcacctgc 298
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389



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>gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, complete sequence
          Length = 204367

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   tgttgctatgtttgtgtgtg 414
             ||||||||||||||||||||
Sbjct: 91892 tgttgctatgtttgtgtgtg 91873



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>ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM01964.1) partial mRNA
          Length = 1812

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  ggcagccatgaagagcacca 62
           ||||||||||||||||||||
Sbjct: 267 ggcagccatgaagagcacca 248



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>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence
          Length = 184556

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   ggtgttgcttgttgaataaa 504
             ||||||||||||||||||||
Sbjct: 83198 ggtgttgcttgttgaataaa 83217



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>ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c), mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  gcaccgtcgacggcacctgc 298
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137



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>gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA clone MGC:136662
            IMAGE:8000407), complete cds
          Length = 2659

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  gcaccgtcgacggcacctgc 298
            ||||||||||||||||||||
Sbjct: 1408 gcaccgtcgacggcacctgc 1389



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>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162004

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   agctcagatgagatgagcag 388
             ||||||||||||||||||||
Sbjct: 86131 agctcagatgagatgagcag 86150



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>ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572763), partial mRNA
          Length = 240

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 279 gcaccgtcgacggcacctgc 298
           ||||||||||||||||||||
Sbjct: 136 gcaccgtcgacggcacctgc 117



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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 296     tgcggtggcccatgcaaaaa 315
               ||||||||||||||||||||
Sbjct: 1357655 tgcggtggcccatgcaaaaa 1357636



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    gttccgctgcgccgacatga 275
              ||||||||||||||||||||
Sbjct: 807673 gttccgctgcgccgacatga 807692



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>dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, map 22, complete
              sequences
          Length = 168017

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    acgcccacccccagtgcccc 208
              ||||||||||||||||||||
Sbjct: 156620 acgcccacccccagtgcccc 156639



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>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF),
            panthotenate metabolism flavoprotein (dfp),
            deoxyuridine-triphosphatase (dut), putative sensor
            protein (bdfA), GalF-like (galF), hypothetical protein
            genes, complete cds; putative helicase 2 gene, partial
            cds; and unknown genes
          Length = 13289

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 256  gttccgctgcgccgacatga 275
            ||||||||||||||||||||
Sbjct: 8366 gttccgctgcgccgacatga 8347



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>emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-109N16, complete sequence
          Length = 190477

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   acgcccacccccagtgcccc 208
             ||||||||||||||||||||
Sbjct: 61446 acgcccacccccagtgcccc 61465



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>gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  gcaccgtcgacggcacctgc 298
            ||||||||||||||||||||
Sbjct: 1156 gcaccgtcgacggcacctgc 1137



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>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364
          Length = 526707

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     cagccatgaagagcaccaagctcg 68
              ||||||||||||| ||||||||||
Sbjct: 158311 cagccatgaagaggaccaagctcg 158334



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>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence
          Length = 179548

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 507    cctctgatggttgtgcgtgt 526
              ||||||||||||||||||||
Sbjct: 135462 cctctgatggttgtgcgtgt 135481



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>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete
             sequence
          Length = 209737

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   tgtttgtgtgtgggccgtgc 422
             ||||||||||||||||||||
Sbjct: 97290 tgtttgtgtgtgggccgtgc 97271



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>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete
            sequence
          Length = 194554

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 403  tgtttgtgtgtgggccgtgc 422
            ||||||||||||||||||||
Sbjct: 8226 tgtttgtgtgtgggccgtgc 8245


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,427,721
Number of Sequences: 3902068
Number of extensions: 4427721
Number of successful extensions: 92048
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91715
Number of HSP's gapped (non-prelim): 329
length of query: 560
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 537
effective length of database: 17,143,297,704
effective search space: 9205950867048
effective search space used: 9205950867048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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