>R1AB_CVBQ (Q8V6W7) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7059

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 82   ILLRTIHWNVQFQLVLMCNTLPEKRSVVILMLAGHVVMH-ESLVSSNCTAISLYRHVCCA 258
            ++L T+HW+V+  LV + N LP            HV M    +++S     SL+RHV   
Sbjct: 2344 LMLSTLHWSVRL-LVSLANMLP-----------AHVFMRFYIIIASFIKLFSLFRHVAYG 2391

Query: 259  CIAFSCI 279
            C    C+
Sbjct: 2392 CSKSGCL 2398

>R1AB_CVBM (Q66198) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase (
          Length = 7094

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 85   LLRTIHWNVQFQLVLMCNTLPEKRSVVILMLAGHVVMH-ESLVSSNCTAISLYRHVCCAC 261
            +L T+HW+V+  LV + N LP            HV M    +++S     SL+RHV   C
Sbjct: 2345 MLSTLHWSVRL-LVSLANMLP-----------AHVFMRFYIIIASFIKLFSLFRHVAYGC 2392

Query: 262  IAFSCI 279
                C+
Sbjct: 2393 SKSGCL 2398

>R1AB_CVBLU (Q8V439) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44);
            3C-like proteinase
          Length = 7094

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +1

Query: 85   LLRTIHWNVQFQLVLMCNTLPEKRSVVILMLAGHVVMH-ESLVSSNCTAISLYRHVCCAC 261
            +L T+HW+V+  LV + N LP            HV M    +++S     SL+RHV   C
Sbjct: 2345 MLSTLHWSVRL-LVSLANMLP-----------AHVFMRFYIIIASFIKLFSLFRHVAYGC 2392

Query: 262  IAFSCI 279
                C+
Sbjct: 2393 SKPGCL 2398


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,127,993
Number of Sequences: 219361
Number of extensions: 1597845
Number of successful extensions: 3358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)