>gb|BT019071.1| Zea mays clone Contig637.F mRNA sequence
          Length = 951

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                       
Query: 491 gcattgcttcaaagctgcgccactttcgcagcgttctcttgcataatggaggggctgaac 550
           |||||||| |||||||| ||||| |||||||| ||||| ||||| ||||||||||| || 
Sbjct: 512 gcattgctccaaagctgtgccaccttcgcagcattctcatgcatcatggaggggctcaat 453

                                 
Query: 551 aagcagcaggctgcaatggctc 572
           ||||||||||||||||||||||
Sbjct: 452 aagcagcaggctgcaatggctc 431

>ref|XM_470578.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 585

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 84/96 (87%)
 Strand = Plus / Plus

                                                                       
Query: 475 tccaggaacacctcaagcattgcttcaaagctgcgccactttcgcagcgttctcttgcat 534
           |||||||||||| ||||| ||||| |||||||| || || || ||||| ||||| |||||
Sbjct: 348 tccaggaacaccacaagccttgctccaaagctgtgcaacctttgcagcattctcatgcat 407

                                               
Query: 535 aatggaggggctgaacaagcagcaggctgcaatggc 570
            ||||||||||| ||||| |||||||||||||||||
Sbjct: 408 catggaggggctcaacaaacagcaggctgcaatggc 443

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                           
Query: 471     ttaatccaggaacacctcaagcattgcttcaaagctgcgccactttcgcagcgttctctt 530
               |||| ||||||||||| ||||| ||||| |||||||| || || || ||||| ||||| |
Sbjct: 4880106 ttaaaccaggaacaccacaagccttgctccaaagctgtgcaacctttgcagcattctcat 4880165

                                                       
Query: 531     gcataatggaggggctgaacaagcagcaggctgcaatggc 570
               |||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 4880166 gcatcatggaggggctcaacaaacagcaggctgcaatggc 4880205

>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                          
Query: 471    ttaatccaggaacacctcaagcattgcttcaaagctgcgccactttcgcagcgttctctt 530
              |||| ||||||||||| ||||| ||||| |||||||| || || || ||||| ||||| |
Sbjct: 115441 ttaaaccaggaacaccacaagccttgctccaaagctgtgcaacctttgcagcattctcat 115382

                                                      
Query: 531    gcataatggaggggctgaacaagcagcaggctgcaatggc 570
              |||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 115381 gcatcatggaggggctcaacaaacagcaggctgcaatggc 115342

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 87/100 (87%)
 Strand = Plus / Plus

                                                                           
Query: 471     ttaatccaggaacacctcaagcattgcttcaaagctgcgccactttcgcagcgttctctt 530
               |||| ||||||||||| ||||| ||||| |||||||| || || || ||||| ||||| |
Sbjct: 4879321 ttaaaccaggaacaccacaagccttgctccaaagctgtgcaacctttgcagcattctcat 4879380

                                                       
Query: 531     gcataatggaggggctgaacaagcagcaggctgcaatggc 570
               |||| ||||||||||| ||||| |||||||||||||||||
Sbjct: 4879381 gcatcatggaggggctcaacaaacagcaggctgcaatggc 4879420

>gb|AY112385.1| Zea mays CL7234_1 mRNA sequence
          Length = 729

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                       
Query: 491 gcattgcttcaaagctgcgccactttcgcagcgttctcttgcataatggaggggctgaac 550
           |||||||| |||||||| || || |||||||| ||||| ||||| ||||||||||| || 
Sbjct: 382 gcattgctccaaagctgtgctaccttcgcagcattctcgtgcatcatggaggggctcaat 441

                                 
Query: 551 aagcagcaggctgcaatggctc 572
           ||||||||||||||||||||||
Sbjct: 442 aagcagcaggctgcaatggctc 463

>gb|AY105087.1| Zea mays PCO115466 mRNA sequence
          Length = 698

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 515 ttcgcagcgttctcttgcataatggaggggctgaacaagcagcaggctgcaatggc 570
           |||||||| ||||| ||||||||||| || || | |||||||||||| ||||||||
Sbjct: 450 ttcgcagcattctcatgcataatggacggtctcagcaagcagcaggcagcaatggc 505

>ref|NM_196065.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBb0089F16.6), mRNA
          Length = 868

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 515 ttcgcagcgttctcttgcataatggaggggctgaacaagcagcaggctgcaatggc 570
           ||||| || ||||||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 443 ttcgcggcattctcttgcatcatggatggactcaataagcagcaggctgccatggc 498

>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete
             sequence
          Length = 154696

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                     
Query: 515   ttcgcagcgttctcttgcataatggaggggctgaacaagcagcaggctgcaatggc 570
             ||||| || ||||||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 30730 ttcgcggcattctcttgcatcatggatggactcaataagcagcaggctgccatggc 30785

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 515      ttcgcagcgttctcttgcataatggaggggctgaacaagcagcaggctgcaatggc 570
                ||||| || ||||||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 10872620 ttcgcggcattctcttgcatcatggatggactcaataagcagcaggctgccatggc 10872675

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 515      ttcgcagcgttctcttgcataatggaggggctgaacaagcagcaggctgcaatggc 570
                ||||| || ||||||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 10878660 ttcgcggcattctcttgcatcatggatggactcaataagcagcaggctgccatggc 10878715

>gb|AC101915.7| Mus musculus chromosome 1, clone RP24-388P13, complete sequence
          Length = 207724

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 54    ctcatgcatctgtggtgctgacttgca 80
             |||||||||||||| ||||||||||||
Sbjct: 77602 ctcatgcatctgtgctgctgacttgca 77628

>gb|AC113490.10| Mus musculus chromosome 1, clone RP23-358M7, complete sequence
          Length = 226924

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 531    gcataatggaggggctgaacaa 552
              ||||||||||||||||||||||
Sbjct: 120076 gcataatggaggggctgaacaa 120097

>emb|AL161555.2|ATCHRIV55 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 55
          Length = 194916

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 334   tttgattgttgtttgtggagattatt 359
             ||||||||||||||||| ||||||||
Sbjct: 73747 tttgattgttgtttgtgtagattatt 73772

>emb|AL022603.1|ATF18E5 Arabidopsis thaliana DNA chromosome 4, BAC clone F18E5 (ESSAII project)
          Length = 95266

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 334   tttgattgttgtttgtggagattatt 359
             ||||||||||||||||| ||||||||
Sbjct: 60739 tttgattgttgtttgtgtagattatt 60764

>gb|AC100873.2| Homo sapiens chromosome 8, clone RP11-978P4, complete sequence
          Length = 153581

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 556   gcaggctgcaatggctcacacc 577
             ||||||||||||||||||||||
Sbjct: 62481 gcaggctgcaatggctcacacc 62502

>gb|AF254136.3| Homo sapiens chromosome 8 clone RP11-386F22, RP11-820H12 map q24.2,
             complete sequence
          Length = 184865

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 556   gcaggctgcaatggctcacacc 577
             ||||||||||||||||||||||
Sbjct: 53332 gcaggctgcaatggctcacacc 53353

>gb|AF050092.1|AF050092 Guillardia theta nuclear beta-tubulin (btubN2) gene, partial cds
          Length = 1209

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 92   gaacaattcactggaatgttc 112
            |||||||||||||||||||||
Sbjct: 1150 gaacaattcactggaatgttc 1170

>gb|AC108812.9| Mus musculus chromosome 18, clone RP23-417M2, complete sequence
          Length = 202340

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 55    tcatgcatctgtggtgctgacttg 78
             |||||||||||| |||||||||||
Sbjct: 72486 tcatgcatctgtagtgctgacttg 72463

>emb|AL353742.23| Human DNA sequence from clone RP11-505C13 on chromosome 9q31.1-32
             Contains part of a novel gene, complete sequence
          Length = 157657

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 436   tttggttacctcattttctc 455
             ||||||||||||||||||||
Sbjct: 28469 tttggttacctcattttctc 28488

>emb|AL157883.15| Human DNA sequence from clone RP11-360J12 on chromosome 9q21.12-21.32
              Contains an orthodenticle homolog 2 (Drosophila) (OTX2)
              pseudogene, complete sequence
          Length = 176870

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 554    cagcaggctgcaatggctcacacc 577
              ||||||| ||||||||||||||||
Sbjct: 141815 cagcagggtgcaatggctcacacc 141838

>emb|AL078590.28|HSA557H15 Human DNA sequence from clone RP11-557H15 on chromosome 6q23.1-23.3
             Contains three novel genes, the 3' part of a novel gene
             and a member A1 of family with sequence similarity 8
             (FAM8A1) pseudogene, complete sequence
          Length = 195021

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 335   ttgattgttgtttgtggagattatttgtgcat 366
             ||||| ||||| |||| |||||||||||||||
Sbjct: 32834 ttgatggttgtgtgtgaagattatttgtgcat 32865

>gb|BC040308.1| Homo sapiens cDNA clone IMAGE:4837072
          Length = 1220

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 335 ttgattgttgtttgtggagattatttgtgcat 366
           ||||| ||||| |||| |||||||||||||||
Sbjct: 890 ttgatggttgtgtgtgaagattatttgtgcat 859

>emb|AJ606330.1| Homo sapiens mRNA for non-coding transcript, polyA signal, clone
           44-5SB/3L
          Length = 1595

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 335 ttgattgttgtttgtggagattatttgtgcat 366
           ||||| ||||| |||| |||||||||||||||
Sbjct: 490 ttgatggttgtgtgtgaagattatttgtgcat 459

>emb|AJ606329.1| Homo sapiens mRNA for non-coding transcript, polyA signal, clone
           44-5SS/3L
          Length = 1553

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 335 ttgattgttgtttgtggagattatttgtgcat 366
           ||||| ||||| |||| |||||||||||||||
Sbjct: 448 ttgatggttgtgtgtgaagattatttgtgcat 417

>emb|AJ606328.1| Homo sapiens mRNA for non-coding transcript, polyA signal, clone
           44-5L/3L
          Length = 2017

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 335 ttgattgttgtttgtggagattatttgtgcat 366
           ||||| ||||| |||| |||||||||||||||
Sbjct: 912 ttgatggttgtgtgtgaagattatttgtgcat 881

>gb|AC098477.2| Homo sapiens chromosome 3 clone RP11-733H11, complete sequence
          Length = 198468

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 51     tcactcatgcatctgtggtg 70
              ||||||||||||||||||||
Sbjct: 108869 tcactcatgcatctgtggtg 108888

>gb|AC166600.4| Nomascus leucogenys leucogenys clone CH271-368I9, complete sequence
          Length = 179470

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    acattttattgagaacaatt 99
             ||||||||||||||||||||
Sbjct: 60128 acattttattgagaacaatt 60147

>gb|AC079762.7| Homo sapiens BAC clone RP11-150F12 from 2, complete sequence
          Length = 163408

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    gcctgcattgcattttcctg 275
              ||||||||||||||||||||
Sbjct: 101654 gcctgcattgcattttcctg 101635

>gb|AC147918.2| Xenopus tropicalis clone CH216-8N16, complete sequence
          Length = 210128

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 489    aagcattgcttcaaagctgcgcca 512
              ||||||||||||||||||| ||||
Sbjct: 117003 aagcattgcttcaaagctgtgcca 117026

>dbj|AB083440.1| Babesia microti gene for beta-tubulin, partial cds
          Length = 1214

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   agaacaattcactggaatgttcag 114
            |||||||||||||| |||||||||
Sbjct: 1146 agaacaattcactgcaatgttcag 1169

>emb|X06085.1|FDGVPA Calothrix PCC 7601 genes gvpA, gvpB and gvpC
          Length = 1939

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 338 attgttgtttgtggagattatttg 361
           |||||||||||| |||||||||||
Sbjct: 742 attgttgtttgttgagattatttg 719

>dbj|AP002988.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-449K13, complete
             sequence
          Length = 105000

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   tgcctgcattgcattttcct 274
             ||||||||||||||||||||
Sbjct: 46936 tgcctgcattgcattttcct 46917

>gb|AC167706.2| Reniera sp. JGI-2005 clone JGIBAYC-9H10, complete sequence
          Length = 41616

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 4    aaacaattgagctatattca 23
            ||||||||||||||||||||
Sbjct: 5577 aaacaattgagctatattca 5596

>gb|AC147645.3| Gallus gallus BAC clone CH261-121C23 from chromosome unknown, complete
             sequence
          Length = 158903

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 517   cgcagcgttctcttgcataa 536
             ||||||||||||||||||||
Sbjct: 65304 cgcagcgttctcttgcataa 65323

>emb|AL772131.5| Mouse DNA sequence from clone RP23-472I13 on chromosome 4, complete
              sequence
          Length = 179035

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    ttgttgtttgtggagattat 358
              ||||||||||||||||||||
Sbjct: 113198 ttgttgtttgtggagattat 113217

>dbj|D83489.2| Tokudaia osimensis ZFX gene, partial cds
          Length = 4465

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 333  atttgattgttgtttgtggagatt 356
            |||||||| |||||||||||||||
Sbjct: 4228 atttgatttttgtttgtggagatt 4251


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,263,064
Number of Sequences: 3902068
Number of extensions: 6263064
Number of successful extensions: 115139
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114983
Number of HSP's gapped (non-prelim): 156
length of query: 607
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 584
effective length of database: 17,143,297,704
effective search space: 10011685859136
effective search space used: 10011685859136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)