ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19i02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein ... 192 2e-46
2ref|XM_463024.1| Oryza sativa (japonica cultivar-group), OSJNBa0... 153 2e-34
3dbj|AK099146.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 2e-34
4dbj|AK061051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 2e-34
5gb|AY107461.1| Zea mays PCO108959 mRNA sequence 137 1e-29
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 131 6e-28
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 131 6e-28
8gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 131 6e-28
9ref|XM_479106.1| Oryza sativa (japonica cultivar-group), mRNA 90 2e-15
10dbj|AK066905.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 2e-15
11gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb002... 86 3e-14
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 86 3e-14
13dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic D... 86 3e-14
14dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic D... 86 3e-14
15gb|BT012908.1| Lycopersicon esculentum clone 114026F, mRNA sequence 80 2e-12
16gb|DQ294256.1| Solanum tuberosum clone 084G12 40S ribosomal prot... 80 2e-12
17gb|DQ241842.1| Solanum tuberosum clone 182H03 unknown mRNA 80 2e-12
18gb|DQ448864.1| Theobroma cacao 40S ribosomal protein S3 mRNA, pa... 76 3e-11
19gb|AY394937.1| Danio rerio clone RK045A1H03 ribosomal protein S3... 72 5e-10
20ref|XM_855394.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
21ref|XM_855358.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
22ref|XM_855322.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
23ref|XM_855288.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
24ref|XM_855253.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
25ref|XM_534008.2| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
26ref|XM_855185.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
27ref|XM_844854.1| PREDICTED: Canis familiaris similar to 40S ribo... 64 1e-07
28gb|DQ111982.1| Aedes albopictus ribosomal protein S3 mRNA, compl... 62 5e-07
29gb|DQ206476.1| Platynereis dumerilii isolate TOA26 ribosomal pro... 62 5e-07
30gb|BC102090.1| Bos taurus ribosomal protein S3, mRNA (cDNA clone... 60 2e-06
31gb|AY880398.1| Gekko japonicus GekBS167P mRNA, complete cds 60 2e-06
32dbj|AB099062.1| Bos taurus mRNA for similar to S3 ribosomal prot... 60 2e-06
33dbj|AB099059.1| Bos taurus mRNA for similar to ribosomal protein... 60 2e-06
34dbj|AB099000.1| Bos taurus mRNA for similar to ribosomal protein... 60 2e-06
35dbj|AB098927.1| Bos taurus mRNA for similar to ribosomal protein... 60 2e-06
36ref|NM_001034047.1| Bos taurus ribosomal protein S3 (RPS3), mRNA 60 2e-06
37gb|AY130450.1| Petromyzon marinus ribosomal protein S3 mRNA, par... 58 7e-06
38gb|AY106013.1| Zea mays PCO066457 mRNA sequence 58 7e-06
39gb|AF429976.1| Spodoptera frugiperda ribosomal protein S3 mRNA, ... 56 3e-05
40gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park C... 54 1e-04
41ref|NM_115247.2| Arabidopsis thaliana nucleic acid binding / str... 52 4e-04
42emb|AM048962.1| Scarabaeus laticollis mRNA for ribosomal protein... 52 4e-04
43gb|AY059090.1| Arabidopsis thaliana putative ribosomal protein S... 52 4e-04
44gb|AY035022.1| Arabidopsis thaliana putative ribosomal protein S... 52 4e-04
45gb|BC010721.1| Mus musculus ribosomal protein S3, mRNA (cDNA clo... 52 4e-04
46dbj|AK148030.1| Mus musculus melanocyte cDNA, RIKEN full-length ... 52 4e-04
47dbj|AK146796.1| Mus musculus 17 days embryo stomach cDNA, RIKEN ... 52 4e-04
48dbj|AK150479.1| Mus musculus bone marrow macrophage cDNA, RIKEN ... 52 4e-04
49dbj|AK166750.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 52 4e-04
50dbj|AK168845.1| Mus musculus 16 days embryo kidney cDNA, RIKEN f... 52 4e-04
51dbj|AK164077.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 52 4e-04
52dbj|AK165174.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN ... 52 4e-04
53dbj|AK167266.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 52 4e-04
54dbj|AK160526.1| Mus musculus ES cells cDNA, RIKEN full-length en... 52 4e-04
55dbj|AK159508.1| Mus musculus osteoclast-like cell cDNA, RIKEN fu... 52 4e-04
56gb|AF428405.1|AF428405 Arabidopsis thaliana AT3g53870/F5K20_170 ... 52 4e-04
57dbj|AK167210.1| Mus musculus blastocyst blastocyst cDNA, RIKEN f... 52 4e-04
58dbj|AK010678.1| Mus musculus ES cells cDNA, RIKEN full-length en... 52 4e-04
59dbj|AK010579.1| Mus musculus ES cells cDNA, RIKEN full-length en... 52 4e-04
60dbj|AK003181.1| Mus musculus 18-day embryo whole body cDNA, RIKE... 52 4e-04
61dbj|AK051243.1| Mus musculus 12 days embryo spinal ganglion cDNA... 52 4e-04
62dbj|AK012538.1| Mus musculus 11 days embryo whole body cDNA, RIK... 52 4e-04
63dbj|AK012314.1| Mus musculus 11 days embryo whole body cDNA, RIK... 52 4e-04
64dbj|AK012234.1| Mus musculus 11 days embryo whole body cDNA, RIK... 52 4e-04
65dbj|AK011655.1| Mus musculus 10 days embryo whole body cDNA, RIK... 52 4e-04
66gb|AY088808.1| Arabidopsis thaliana clone 9568 mRNA, complete se... 52 4e-04
67gb|U89414.1|MMU89414 Mus musculus strain BALB/c ribosomal protei... 52 4e-04
68ref|NM_012052.1| Mus musculus ribosomal protein S3 (Rps3), mRNA 52 4e-04
69emb|X76772.1|MMRIBPS3 M.musculus mRNA for ribosomal protein S3 52 4e-04
70emb|BX824880.1|CNS0A5OP Arabidopsis thaliana Full-length cDNA Co... 50 0.002
71gb|AY130363.1| Myxine glutinosa ribosomal protein S3 mRNA, parti... 50 0.002
72dbj|AP004944.1| Lotus japonicus genomic DNA, chromosome 1, clone... 48 0.007
73gb|DQ214649.1| Taeniopygia guttata clone 0058P0041G12 ribosomal ... 46 0.028
74gb|DQ214648.1| Taeniopygia guttata clone 0061P0010D11 ribosomal ... 46 0.028
75gb|DQ214647.1| Taeniopygia guttata clone 0058P0031F07 ribosomal ... 46 0.028
76gb|DQ214646.1| Taeniopygia guttata clone 0061P0002D05 ribosomal ... 46 0.028
77gb|DQ214645.1| Taeniopygia guttata clone 0058P0024B05 ribosomal ... 46 0.028
78gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, co... 46 0.028
79gb|AY043296.2| Mus musculus ribosomal protein S3 (Rps3) gene, co... 46 0.028
80dbj|AK143603.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 46 0.028
81dbj|AK088038.1| Mus musculus 2 days neonate thymus thymic cells ... 46 0.028
82dbj|AK206775.1| Mus musculus cDNA, clone:Y2G0105O03, strand:plus... 46 0.028
83dbj|AB098811.1| Bos taurus mRNA for similar to S3 ribosomal prot... 44 0.11
84gb|AY292622.1| Oikopleura dioica 40S ribosomal protein S3 (RS3) ... 42 0.43
85gb|DQ122868.1| Chlamydomonas incerta 40S ribosomal protein S3 mR... 42 0.43
86emb|BX823126.1|CNS0A5V8 Arabidopsis thaliana Full-length cDNA Co... 42 0.43
87gb|AC092218.2| Drosophila melanogaster clone BACR12B06, complete... 40 1.7
88gb|AY389965.1| Gallus gallus ribosomal protein S3 mRNA, partial cds 40 1.7
89ref|XM_793211.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 1.7
90ref|NM_165046.1| Drosophila melanogaster B4 CG9239-RB, transcrip... 40 1.7
91ref|NM_057977.3| Drosophila melanogaster B4 CG9239-RA, transcrip... 40 1.7
92gb|AY061420.1| Drosophila melanogaster LD35137 full length cDNA 40 1.7
93gb|AY060445.1| Drosophila melanogaster LD48089 full length cDNA 40 1.7
94emb|CR353973.1| Gallus gallus finished cDNA, clone ChEST9g22 40 1.7
95emb|CR353589.1| Gallus gallus finished cDNA, clone ChEST57i12 40 1.7
96emb|CR352745.1| Gallus gallus finished cDNA, clone ChEST10e18 40 1.7
97gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49... 40 1.7
98gb|AF022364.1|AF022364 Drosophila melanogaster B4 mRNA, complete... 40 1.7
99gb|AY389945.1| Latimeria chalumnae ribosomal protein S3 mRNA, pa... 38 6.7
100gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosom... 38 6.7
101gb|AC132244.3| Mus musculus BAC clone RP24-419I10 from chromosom... 38 6.7
102gb|AC133207.3| Mus musculus BAC clone RP23-116L23 from chromosom... 38 6.7
103gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-... 38 6.7
104gb|AY513653.1| Ostrinia nubilalis ribosomal protein S3 (rps3) mR... 38 6.7
105gb|AY130362.1| Branchiostoma lanceolatum ribosomal protein S3-li... 38 6.7
106gb|U12708.1|MSU12708 Manduca sexta ribosomal protein S3 mRNA, co... 38 6.7 
>gb|AY123420.1| Triticum aestivum putative 40S ribosomal protein S3 mRNA, complete
           cds
          Length = 1004

 Score =  192 bits (97), Expect = 2e-46
 Identities = 129/141 (91%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||||||||| |||| ||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct: 310 aagcgcttcaacttcctggagaacggcgttgagctttacgccgagaaggtcgtcaaccgt 369

                                                                       
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
           || ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| 
Sbjct: 370 ggcctctgcgccatcgcccaggccgagtcactccgctacaagctcctcggaggccttgcc 429

                                
Query: 121 gtccgcanggcttgctatggt 141
           ||||||| |||||||||||||
Sbjct: 430 gtccgcagggcttgctatggt 450
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>ref|XM_463024.1| Oryza sativa (japonica cultivar-group), OSJNBa0008D12.4 mRNA
          Length = 1112

 Score =  153 bits (77), Expect = 2e-34
 Identities = 124/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||||||||| ||||| ||||||||||| || || || |||||||||| ||||||||| 
Sbjct: 336 aagcgcttcaacttccccgagaacggcgtcgagctctacgccgagaaggtcgtcaaccgc 395

                                                                       
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
           || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || 
Sbjct: 396 ggcctctgcgccatcgcccaggccgagtccctccgctacaagcttcttggaggcctcgcc 455

                                
Query: 121 gtccgcanggcttgctatggt 141
           ||||||| |||||||||||||
Sbjct: 456 gtccgcagggcttgctatggt 476
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>dbj|AK099146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061B16, full
           insert sequence
          Length = 1054

 Score =  153 bits (77), Expect = 2e-34
 Identities = 124/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||||||||| ||||| ||||||||||| || || || |||||||||| ||||||||| 
Sbjct: 346 aagcgcttcaacttccccgagaacggcgtcgagctctacgccgagaaggtcgtcaaccgc 405

                                                                       
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
           || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || 
Sbjct: 406 ggcctctgcgccatcgcccaggccgagtccctccgctacaagcttcttggaggcctcgcc 465

                                
Query: 121 gtccgcanggcttgctatggt 141
           ||||||| |||||||||||||
Sbjct: 466 gtccgcagggcttgctatggt 486
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>dbj|AK061051.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-G04, full
           insert sequence
          Length = 1084

 Score =  153 bits (77), Expect = 2e-34
 Identities = 124/141 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||||||||| ||||| ||||||||||| || || || |||||||||| ||||||||| 
Sbjct: 348 aagcgcttcaacttccccgagaacggcgtcgagctctacgccgagaaggtcgtcaaccgc 407

                                                                       
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
           || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || 
Sbjct: 408 ggcctctgcgccatcgcccaggccgagtccctccgctacaagcttcttggaggcctcgcc 467

                                
Query: 121 gtccgcanggcttgctatggt 141
           ||||||| |||||||||||||
Sbjct: 468 gtccgcagggcttgctatggt 488
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>gb|AY107461.1| Zea mays PCO108959 mRNA sequence
          Length = 794

 Score =  137 bits (69), Expect = 1e-29
 Identities = 113/129 (87%)
 Strand = Plus / Plus

                                                                       
Query: 13  ttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgtggnctctgcgcc 72
           ||||| ||||| ||||| || ||||| |||||||||| |||||||||||| ||||| |||
Sbjct: 46  ttccctgagaatggcgtcgagctttacgccgagaaggtcgtcaaccgtgggctctgtgcc 105

                                                                       
Query: 73  atcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggct 132
           ||||| || || ||||| ||||| ||||||||||| ||||||||||| ||||||| ||||
Sbjct: 106 atcgcgcaggccgagtccctccgttacaagctcctcggaggccttgccgtccgcagggct 165

                    
Query: 133 tgctatggt 141
           |||||||||
Sbjct: 166 tgctatggt 174
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 6e-28
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
                ||||||||||| ||||| ||||||||||| || || || |||||||||| ||||||||| 
Sbjct: 20907455 aagcgcttcaacttccccgagaacggcgtcgagctctacgccgagaaggtcgtcaaccgc 20907396

                                                                            
Query: 61       ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
                || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || 
Sbjct: 20907395 ggcctctgcgccatcgcccaggccgagtccctccgctacaagcttcttggaggcctcgcc 20907336

                       
Query: 121      gtccgca 127
                |||||||
Sbjct: 20907335 gtccgca 20907329
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 6e-28
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
                ||||||||||| ||||| ||||||||||| || || || |||||||||| ||||||||| 
Sbjct: 20900484 aagcgcttcaacttccccgagaacggcgtcgagctctacgccgagaaggtcgtcaaccgc 20900425

                                                                            
Query: 61       ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
                || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || 
Sbjct: 20900424 ggcctctgcgccatcgcccaggccgagtccctccgctacaagcttcttggaggcctcgcc 20900365

                       
Query: 121      gtccgca 127
                |||||||
Sbjct: 20900364 gtccgca 20900358
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>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score =  131 bits (66), Expect = 6e-28
 Identities = 111/127 (87%)
 Strand = Plus / Plus

                                                                         
Query: 1     aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
             ||||||||||| ||||| ||||||||||| || || || |||||||||| ||||||||| 
Sbjct: 15468 aagcgcttcaacttccccgagaacggcgtcgagctctacgccgagaaggtcgtcaaccgc 15527

                                                                         
Query: 61    ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
             || ||||||||||||||||| || ||||| ||||| |||||||| ||||||||||| || 
Sbjct: 15528 ggcctctgcgccatcgcccaggccgagtccctccgctacaagcttcttggaggcctcgcc 15587

                    
Query: 121   gtccgca 127
             |||||||
Sbjct: 15588 gtccgca 15594
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>ref|XM_479106.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 926

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 116/141 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||| ||||| ||||||||||| ||||| || || || ||||||||||    |||||| 
Sbjct: 311 aagcggttcaacttcccggagaatggcgtcgagctctacgccgagaaggtgaacaaccgc 370

                                                                       
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
           || ||||||||||||||||| || ||||| ||||| ||||||||||| || ||||| || 
Sbjct: 371 ggcctctgcgccatcgcccaggccgagtcgctccgctacaagctcctcggtggcctcgcc 430

                                
Query: 121 gtccgcanggcttgctatggt 141
           ||| | | ||| |||||||||
Sbjct: 431 gtcagaagggcgtgctatggt 451
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>dbj|AK066905.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092O21, full
           insert sequence
          Length = 926

 Score = 89.7 bits (45), Expect = 2e-15
 Identities = 116/141 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||| ||||| ||||||||||| ||||| || || || ||||||||||    |||||| 
Sbjct: 311 aagcggttcaacttcccggagaatggcgtcgagctctacgccgagaaggtgaacaaccgc 370

                                                                       
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgct 120
           || ||||||||||||||||| || ||||| ||||| ||||||||||| || ||||| || 
Sbjct: 371 ggcctctgcgccatcgcccaggccgagtcgctccgctacaagctcctcggtggcctcgcc 430

                                
Query: 121 gtccgcanggcttgctatggt 141
           ||| | | ||| |||||||||
Sbjct: 431 gtcagaagggcgtgctatggt 451
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>gb|AC079038.3|AC079038 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence
          Length = 129838

 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                          
Query: 1      aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
              ||||| ||||| ||||||||||| ||||| || || || ||||||||||    |||||| 
Sbjct: 121530 aagcggttcaacttcccggagaatggcgtcgagctctacgccgagaaggtgaacaaccgc 121589

                                                                      
Query: 61     ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
              || ||||||||||||||||| || ||||| ||||| ||||||||||| || |||||
Sbjct: 121590 ggcctctgcgccatcgcccaggccgagtcgctccgctacaagctcctcggtggcct 121645
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                            
Query: 1        aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
                ||||| ||||| ||||||||||| ||||| || || || ||||||||||    |||||| 
Sbjct: 24967623 aagcggttcaacttcccggagaatggcgtcgagctctacgccgagaaggtgaacaaccgc 24967564

                                                                        
Query: 61       ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
                || ||||||||||||||||| || ||||| ||||| ||||||||||| || |||||
Sbjct: 24967563 ggcctctgcgccatcgcccaggccgagtcgctccgctacaagctcctcggtggcct 24967508
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>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0072I06
          Length = 162411

 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                          
Query: 1      aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
              ||||| ||||| ||||||||||| ||||| || || || ||||||||||    |||||| 
Sbjct: 151255 aagcggttcaacttcccggagaatggcgtcgagctctacgccgagaaggtgaacaaccgc 151196

                                                                      
Query: 61     ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
              || ||||||||||||||||| || ||||| ||||| ||||||||||| || |||||
Sbjct: 151195 ggcctctgcgccatcgcccaggccgagtcgctccgctacaagctcctcggtggcct 151140
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>dbj|AP005895.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBb0018L13
          Length = 131155

 Score = 85.7 bits (43), Expect = 3e-14
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                        
Query: 1    aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
            ||||| ||||| ||||||||||| ||||| || || || ||||||||||    |||||| 
Sbjct: 8303 aagcggttcaacttcccggagaatggcgtcgagctctacgccgagaaggtgaacaaccgc 8244

                                                                    
Query: 61   ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
            || ||||||||||||||||| || ||||| ||||| ||||||||||| || |||||
Sbjct: 8243 ggcctctgcgccatcgcccaggccgagtcgctccgctacaagctcctcggtggcct 8188
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>gb|BT012908.1| Lycopersicon esculentum clone 114026F, mRNA sequence
          Length = 999

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                       
Query: 64  ctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtc 123
           ||||| ||||| || || ||||||||||| ||||||||| | |||||||| |||||||||
Sbjct: 372 ctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtc 431

                             
Query: 124 cgcanggcttgctatggt 141
           || | |||||||||||||
Sbjct: 432 cgaagggcttgctatggt 449
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>gb|DQ294256.1| Solanum tuberosum clone 084G12 40S ribosomal protein-like protein
           mRNA, complete cds
          Length = 968

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                       
Query: 64  ctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtc 123
           ||||| ||||| || || ||||||||||| ||||||||| | |||||||| |||||||||
Sbjct: 319 ctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtc 378

                             
Query: 124 cgcanggcttgctatggt 141
           || | |||||||||||||
Sbjct: 379 cgaagggcttgctatggt 396
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>gb|DQ241842.1| Solanum tuberosum clone 182H03 unknown mRNA
          Length = 938

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 68/78 (87%)
 Strand = Plus / Plus

                                                                       
Query: 64  ctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtc 123
           ||||| ||||| || || ||||||||||| ||||||||| | |||||||| |||||||||
Sbjct: 322 ctctgtgccattgctcaggcagagtcactgcgatacaagttacttggaggacttgctgtc 381

                             
Query: 124 cgcanggcttgctatggt 141
           || | |||||||||||||
Sbjct: 382 cgaagggcttgctatggt 399
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>gb|DQ448864.1| Theobroma cacao 40S ribosomal protein S3 mRNA, partial cds
          Length = 257

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| || || |||||||| || || |||||||||||||||||||||||||| || | |
Sbjct: 121 gccattgctcaggcagagtccctgcgttacaagctccttggaggccttgctgttcggagg 180

                       
Query: 130 gcttgctatggt 141
           ||||||||||||
Sbjct: 181 gcttgctatggt 192
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>gb|AY394937.1| Danio rerio clone RK045A1H03 ribosomal protein S3 mRNA, complete
           cds
          Length = 821

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 72/85 (84%)
 Strand = Plus / Plus

                                                                       
Query: 57  ccgtggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
           |||||| |||||||||||||| || |||||||| || || |||||||| || ||||| ||
Sbjct: 280 ccgtggtctctgcgccatcgctcaggcagagtctctgcgctacaagctgctcggaggact 339

                                    
Query: 117 tgctgtccgcanggcttgctatggt 141
            |||||||| | ||| |||||||||
Sbjct: 340 ggctgtccgtagggcctgctatggt 364
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>ref|XM_855394.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 9 (LOC476804), mRNA
          Length = 690

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 349 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 408

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 409 tatggt 414
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>ref|XM_855358.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 8 (LOC476804), mRNA
          Length = 758

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 349 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 408

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 409 tatggt 414
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>ref|XM_855322.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 7 (LOC476804), mRNA
          Length = 1138

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 275 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 334

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 335 tatggt 340
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>ref|XM_855288.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 6 (LOC476804), mRNA
          Length = 1175

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 312 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 371

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 372 tatggt 377
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>ref|XM_855253.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 5 (LOC476804), mRNA
          Length = 1155

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 292 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 351

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 352 tatggt 357
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>ref|XM_534008.2| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 1 (LOC476804), mRNA
          Length = 1212

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 349 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 408

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 409 tatggt 414
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>ref|XM_855185.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 4 (LOC476804), mRNA
          Length = 1193

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 349 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 408

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 409 tatggt 414
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>ref|XM_844854.1| PREDICTED: Canis familiaris similar to 40S ribosomal protein S3,
           transcript variant 3 (LOC476804), mRNA
          Length = 1106

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 76  gcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcanggcttgc 135
           ||||| ||||||||||| || ||||| ||||| |||||||||||||| || | ||| |||
Sbjct: 349 gcccaggcagagtcactgcgttacaaactcctaggaggccttgctgtgcggagggcctgc 408

                 
Query: 136 tatggt 141
           ||||||
Sbjct: 409 tatggt 414
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>gb|DQ111982.1| Aedes albopictus ribosomal protein S3 mRNA, complete cds
          Length = 867

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 37  tatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagagtcactccga 96
           ||||||||||||| || || |||||| || |||||||||||||| || || || ||||| 
Sbjct: 305 tatgccgagaaggtcgccacccgtggtctgtgcgccatcgcccaggctgaatctctccgc 364

                   
Query: 97  tacaagct 104
           ||||||||
Sbjct: 365 tacaagct 372
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>gb|DQ206476.1| Platynereis dumerilii isolate TOA26 ribosomal protein 3 small
           subunit mRNA, partial cds
          Length = 564

 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 70/84 (83%)
 Strand = Plus / Plus

                                                                       
Query: 57  ccgtggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
           |||||| || |||||||| ||||| || ||||| ||||||||||||||  ||||||| ||
Sbjct: 195 ccgtggtctttgcgccattgcccaggctgagtccctccgatacaagcttattggaggtct 254

                                   
Query: 117 tgctgtccgcanggcttgctatgg 140
            |||||| | | ||| ||||||||
Sbjct: 255 cgctgtcagaagggcctgctatgg 278
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>gb|BC102090.1| Bos taurus ribosomal protein S3, mRNA (cDNA clone MGC:127206
           IMAGE:7945675), complete cds
          Length = 906

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||| |||||||||||||| || | |
Sbjct: 320 gccattgcccaggcagagtctctgcgttacaaactcctaggaggccttgctgtgcggagg 379

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 380 gcctgctatggt 391
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>gb|AY880398.1| Gekko japonicus GekBS167P mRNA, complete cds
          Length = 879

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || |||||||| ||||| || ||||||||||| || | |
Sbjct: 331 gccattgcccaggcagagtctctgcgatacaaactcctcgggggccttgctgtgcggagg 390

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 391 gcctgctatggt 402
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>dbj|AB099062.1| Bos taurus mRNA for similar to S3 ribosomal protein, partial cds,
           clone: ORCS13152
          Length = 557

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||| |||||||||||||| || | |
Sbjct: 274 gccattgcccaggcagagtctctgcgttacaaactcctaggaggccttgctgtgcggagg 333

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 334 gcctgctatggt 345
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>dbj|AB099059.1| Bos taurus mRNA for similar to ribosomal protein S3, partial cds,
           clone: ORCS13120
          Length = 568

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||| |||||||||||||| || | |
Sbjct: 282 gccattgcccaggcagagtctctgcgttacaaactcctaggaggccttgctgtgcggagg 341

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 342 gcctgctatggt 353
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>dbj|AB099000.1| Bos taurus mRNA for similar to ribosomal protein S3, partial cds,
           clone: ORCS11810
          Length = 562

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||| |||||||||||||| || | |
Sbjct: 302 gccattgcccaggcagagtctctgcgttacaaactcctaggaggccttgctgtgcggagg 361

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 362 gcctgctatggt 373
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>dbj|AB098927.1| Bos taurus mRNA for similar to ribosomal protein S3, partial cds,
           clone: ORCS10555
          Length = 626

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||| |||||||||||||| || | |
Sbjct: 298 gccattgcccaggcagagtctctgcgttacaaactcctaggaggccttgctgtgcggagg 357

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 358 gcctgctatggt 369
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>ref|NM_001034047.1| Bos taurus ribosomal protein S3 (RPS3), mRNA
          Length = 906

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 61/72 (84%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||| |||||||||||||| || | |
Sbjct: 320 gccattgcccaggcagagtctctgcgttacaaactcctaggaggccttgctgtgcggagg 379

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 380 gcctgctatggt 391
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>gb|AY130450.1| Petromyzon marinus ribosomal protein S3 mRNA, partial cds
          Length = 617

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 71/86 (82%)
 Strand = Plus / Plus

                                                                       
Query: 55  aaccgtggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggc 114
           |||||||| || ||||||||||||||    ||||| || || |||||||| || ||||| 
Sbjct: 277 aaccgtggcctatgcgccatcgcccagtgcgagtcgctgcgctacaagctgctcggaggg 336

                                     
Query: 115 cttgctgtccgcanggcttgctatgg 140
           || |||||||||| ||| ||||||||
Sbjct: 337 ctcgctgtccgcagggcgtgctatgg 362
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>gb|AY106013.1| Zea mays PCO066457 mRNA sequence
          Length = 819

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 89/110 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagcgcttcaatttcccggagaacggcgttgaactttatgccgagaaggncgtcaaccgt 60
           ||||||||||| |||||||||   || ||||| || || || |||||||    |||||||
Sbjct: 276 aagcgcttcaacttcccggagggtggtgttgagctctacgcagagaaggtgaacaaccgt 335

                                                             
Query: 61  ggnctctgcgccatcgcccangcagagtcactccgatacaagctccttgg 110
           || ||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 336 ggcctctgcgccattgcccaggccgagtcgctacgctacaagcttcttgg 385
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>gb|AF429976.1| Spodoptera frugiperda ribosomal protein S3 mRNA, complete cds
          Length = 855

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 58  cgtggnctctgcgccatcgcccangcagagtcactccgatacaagctccttggaggcctt 117
           ||||| || |||||||||||||| || ||||| ||| ||||||| ||| ||||||| |||
Sbjct: 337 cgtggtctgtgcgccatcgcccaggccgagtctctcagatacaaactcattggaggtctt 396

             
Query: 118 gc 119
           ||
Sbjct: 397 gc 398
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>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166585

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                        
Query: 65     tctgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgt 122
              |||| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||||||
Sbjct: 102126 tctgtgccattgcccaggcagagtctctgcgttacaagctcctaggagggcttgctgt 102183
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>ref|NM_115247.2| Arabidopsis thaliana nucleic acid binding / structural constituent
           of ribosome AT3G53870 mRNA, complete cds
          Length = 976

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagag 87
           ||||| ||||||||||||||||    |||| | || ||||| |||||||| || || |||
Sbjct: 303 gttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgag 362

                                                                 
Query: 88  tcactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           ||  | || |||||||| ||||| || || ||||| || | |||||||||||||
Sbjct: 363 tctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgctatggt 416
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>emb|AM048962.1| Scarabaeus laticollis mRNA for ribosomal protein S3e (rpS3e gene)
          Length = 726

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 64  ctctgcgccatcgcccangcagagtcactccgatacaagct 104
           ||||||||||||||||| || ||||| ||||| ||||||||
Sbjct: 286 ctctgcgccatcgcccaggcggagtctctccgctacaagct 326
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>gb|AY059090.1| Arabidopsis thaliana putative ribosomal protein S3a homolog
           (At3g53870) mRNA, complete cds
          Length = 781

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagag 87
           ||||| ||||||||||||||||    |||| | || ||||| |||||||| || || |||
Sbjct: 250 gttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgag 309

                                                                 
Query: 88  tcactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           ||  | || |||||||| ||||| || || ||||| || | |||||||||||||
Sbjct: 310 tctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgctatggt 363
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>gb|AY035022.1| Arabidopsis thaliana putative ribosomal protein S3a homolog
           (At3g53870) mRNA, complete cds
          Length = 957

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagag 87
           ||||| ||||||||||||||||    |||| | || ||||| |||||||| || || |||
Sbjct: 303 gttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgag 362

                                                                 
Query: 88  tcactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           ||  | || |||||||| ||||| || || ||||| || | |||||||||||||
Sbjct: 363 tctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgctatggt 416
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>gb|BC010721.1| Mus musculus ribosomal protein S3, mRNA (cDNA clone MGC:6565
           IMAGE:2811930), complete cds
          Length = 835

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 310 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 369

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 370 gcctgctatggt 381
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>dbj|AK148030.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
           clone:G270146M21 product:ribosomal protein S3, full
           insert sequence
          Length = 833

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 381

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 382 gcctgctatggt 393
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>dbj|AK146796.1| Mus musculus 17 days embryo stomach cDNA, RIKEN full-length
           enriched library, clone:I920057H11 product:ribosomal
           protein S3, full insert sequence
          Length = 828

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 323 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 382

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 383 gcctgctatggt 394
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>dbj|AK150479.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830008E12 product:ribosomal
           protein S3, full insert sequence
          Length = 818

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 316 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 375

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 376 gcctgctatggt 387
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>dbj|AK166750.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0008L11 product:ribosomal protein S3,
           full insert sequence
          Length = 829

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 324 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 383

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 384 gcctgctatggt 395
to top
>dbj|AK168845.1| Mus musculus 16 days embryo kidney cDNA, RIKEN full-length enriched
           library, clone:I920060E02 product:ribosomal protein S3,
           full insert sequence
          Length = 814

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 312 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 371

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 372 gcctgctatggt 383
to top
>dbj|AK164077.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530001F06 product:ribosomal
           protein S3, full insert sequence
          Length = 1818

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 323 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 382

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 383 gcctgctatggt 394
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>dbj|AK165174.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length
           enriched library, clone:E860101I01 product:ribosomal
           protein S3, full insert sequence
          Length = 814

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 312 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 371

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 372 gcctgctatggt 383
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>dbj|AK167266.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0048B03 product:ribosomal protein S3,
           full insert sequence
          Length = 814

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 312 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 371

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 372 gcctgctatggt 383
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>dbj|AK160526.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2400004M03 product:ribosomal protein S3, full
           insert sequence
          Length = 841

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 381

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 382 gcctgctatggt 393
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>dbj|AK159508.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched
           library, clone:I420022F20 product:ribosomal protein S3,
           full insert sequence
          Length = 825

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 323 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 382

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 383 gcctgctatggt 394
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>gb|AF428405.1|AF428405 Arabidopsis thaliana AT3g53870/F5K20_170 mRNA, complete cds
          Length = 926

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagag 87
           ||||| ||||||||||||||||    |||| | || ||||| |||||||| || || |||
Sbjct: 303 gttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgag 362

                                                                 
Query: 88  tcactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           ||  | || |||||||| ||||| || || ||||| || | |||||||||||||
Sbjct: 363 tctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgctatggt 416
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>dbj|AK167210.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
           library, clone:I1C0040O11 product:ribosomal protein S3,
           full insert sequence
          Length = 824

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 381

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 382 gcctgctatggt 393
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>dbj|AK010678.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410046D10 product:ribosomal protein S3, full
           insert sequence
          Length = 823

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 321 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 380

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 381 gcctgctatggt 392
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>dbj|AK010579.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410024F19 product:ribosomal protein S3, full
           insert sequence
          Length = 829

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 323 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 382

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 383 gcctgctatggt 394
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>dbj|AK003181.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
           enriched library, clone:1100001J14 product:ribosomal
           protein S3, full insert sequence
          Length = 824

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 318 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 377

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 378 gcctgctatggt 389
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>dbj|AK051243.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130020M13 product:ribosomal
           protein S3, full insert sequence
          Length = 835

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 323 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 382

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 383 gcctgctatggt 394
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>dbj|AK012538.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700079O13 product:ribosomal
           protein S3, full insert sequence
          Length = 827

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 381

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 382 gcctgctatggt 393
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>dbj|AK012314.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700033D19 product:ribosomal
           protein S3, full insert sequence
          Length = 824

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 381

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 382 gcctgctatggt 393
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>dbj|AK012234.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2700010N02 product:ribosomal
           protein S3, full insert sequence
          Length = 827

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 381

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 382 gcctgctatggt 393
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>dbj|AK011655.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610034C13 product:ribosomal
           protein S3, full insert sequence
          Length = 823

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 318 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 377

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 378 gcctgctatggt 389
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>gb|AY088808.1| Arabidopsis thaliana clone 9568 mRNA, complete sequence
          Length = 970

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 91/114 (79%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagag 87
           ||||| ||||||||||||||||    |||| | || ||||| |||||||| || || |||
Sbjct: 304 gttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgag 363

                                                                 
Query: 88  tcactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           ||  | || |||||||| ||||| || || ||||| || | |||||||||||||
Sbjct: 364 tctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgctatggt 417
to top
>gb|U89414.1|MMU89414 Mus musculus strain BALB/c ribosomal protein S3 mRNA, partial cds
          Length = 370

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 98  gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 157

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 158 gcctgctatggt 169
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>ref|NM_012052.1| Mus musculus ribosomal protein S3 (Rps3), mRNA
          Length = 818

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 297 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 356

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 357 gcctgctatggt 368
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>emb|X76772.1|MMRIBPS3 M.musculus mRNA for ribosomal protein S3
          Length = 818

 Score = 52.0 bits (26), Expect = 4e-04
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgcang 129
           ||||| ||||| |||||||| || || ||||| ||||||||||| ||||| || || | |
Sbjct: 297 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgcggttcgaagg 356

                       
Query: 130 gcttgctatggt 141
           || |||||||||
Sbjct: 357 gcctgctatggt 368
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>emb|BX824880.1|CNS0A5OP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH7ZC06 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 883

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 90/113 (79%)
 Strand = Plus / Plus

                                                                       
Query: 29  ttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagagt 88
           |||| ||||||||||||||||    |||| | || ||||| |||||||| || || ||||
Sbjct: 284 ttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgagt 343

                                                                
Query: 89  cactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           |  | || |||||||| ||||| || || ||||| || | |||||||||||||
Sbjct: 344 ctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgctatggt 396
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>gb|AY130363.1| Myxine glutinosa ribosomal protein S3 mRNA, partial cds
          Length = 634

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 97  tacaagctccttggaggccttgctgtccgcanggcttgctatgg 140
           |||||||||||||| ||||||||||| || |  |||||||||||
Sbjct: 290 tacaagctccttggtggccttgctgtgcgaagagcttgctatgg 333
to top
>dbj|AP004944.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT43B20, TM0117a,
             complete sequence
          Length = 33359

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 70    gccatcgcccangcagagtcactccgatacaagctccttggaggcct 116
             ||||| ||||| || ||||| ||||| |||||||||||||| |||||
Sbjct: 29398 gccattgcccaagccgagtctctccgctacaagctccttggtggcct 29352
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>gb|DQ214649.1| Taeniopygia guttata clone 0058P0041G12 ribosomal protein S3-like
           mRNA, complete sequence
          Length = 843

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgca 127
           ||||||||||| || ||||| || || ||||||||||| ||||| || ||||| ||||
Sbjct: 317 gccatcgcccaggccgagtccctgcgctacaagctcctgggagggctggctgtgcgca 374
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>gb|DQ214648.1| Taeniopygia guttata clone 0061P0010D11 ribosomal protein S3-like
           mRNA, complete sequence
          Length = 873

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgca 127
           ||||||||||| || ||||| || || ||||||||||| ||||| || ||||| ||||
Sbjct: 346 gccatcgcccaggccgagtccctgcgctacaagctcctgggagggctggctgtgcgca 403
to top
>gb|DQ214647.1| Taeniopygia guttata clone 0058P0031F07 ribosomal protein S3-like
           mRNA, complete sequence
          Length = 858

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgca 127
           ||||||||||| || ||||| || || ||||||||||| ||||| || ||||| ||||
Sbjct: 332 gccatcgcccaggccgagtccctgcgctacaagctcctgggagggctggctgtgcgca 389
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>gb|DQ214646.1| Taeniopygia guttata clone 0061P0002D05 ribosomal protein S3-like
           mRNA, complete sequence
          Length = 797

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgca 127
           ||||||||||| || ||||| || || ||||||||||| ||||| || ||||| ||||
Sbjct: 270 gccatcgcccaggccgagtccctgcgctacaagctcctgggagggctggctgtgcgca 327
to top
>gb|DQ214645.1| Taeniopygia guttata clone 0058P0024B05 ribosomal protein S3-like
           mRNA, complete sequence
          Length = 845

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgtccgca 127
           ||||||||||| || ||||| || || ||||||||||| ||||| || ||||| ||||
Sbjct: 306 gccatcgcccaggccgagtccctgcgctacaagctcctgggagggctggctgtgcgca 363
to top
>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence
          Length = 175843

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                               
Query: 70    gccatcgcccangcagagtcactccgatacaagctccttggaggccttgc 119
             ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct: 84659 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgc 84610
to top
>gb|AY043296.2| Mus musculus ribosomal protein S3 (Rps3) gene, complete cds; and U15a
            snoRNA and U15b snoRNA genes, complete sequence
          Length = 4760

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                              
Query: 70   gccatcgcccangcagagtcactccgatacaagctccttggaggccttgc 119
            ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct: 1900 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgc 1949
to top
>dbj|AK143603.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F420014N21 product:ribosomal protein S3,
           full insert sequence
          Length = 3184

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgc 119
           ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct: 322 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgc 371
to top
>dbj|AK088038.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
           full-length enriched library, clone:E430002K24
           product:RIBOSOMAL PROTEIN S3 (FRAGMENT) homolog [Mus
           musculus], full insert sequence
          Length = 831

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgc 119
           ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct: 323 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgc 372
to top
>dbj|AK206775.1| Mus musculus cDNA, clone:Y2G0105O03, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000032998, based on BLAT search
          Length = 327

 Score = 46.1 bits (23), Expect = 0.028
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 70  gccatcgcccangcagagtcactccgatacaagctccttggaggccttgc 119
           ||||| ||||| |||||||| || || ||||| ||||||||||| |||||
Sbjct: 277 gccattgcccaggcagagtctctacgctacaaactccttggagggcttgc 326
to top
>dbj|AB098811.1| Bos taurus mRNA for similar to S3 ribosomal protein, partial cds,
           clone: ORCS13152
          Length = 619

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 97  tacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           ||||| ||||| |||||||||||||| || | ||| |||||||||
Sbjct: 479 tacaaactcctaggaggccttgctgtgcggagggcctgctatggt 435
to top
>gb|AY292622.1| Oikopleura dioica 40S ribosomal protein S3 (RS3) gene, complete cds
          Length = 1281

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 54/66 (81%)
 Strand = Plus / Plus

                                                                       
Query: 40  gccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagagtcactccgatac 99
           ||||| |||| || |||||| || |||||||||||||| ||    || || |||||||||
Sbjct: 353 gccgaaaaggtcgccaaccgaggtctctgcgccatcgctcagtgcgaatctctccgatac 412

                 
Query: 100 aagctc 105
           ||||||
Sbjct: 413 aagctc 418
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>gb|DQ122868.1| Chlamydomonas incerta 40S ribosomal protein S3 mRNA, complete cds
          Length = 886

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 67  tgcgccatcgcccangcagagtcactccgatacaagctccttggaggccttgctgt 122
           |||||||||||||| || ||||| || || |||||||| || || ||||| |||||
Sbjct: 304 tgcgccatcgcccaggccgagtcgctgcgctacaagctgctgggtggcctggctgt 359
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>emb|BX823126.1|CNS0A5V8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB91ZH06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 907

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 89/113 (78%)
 Strand = Plus / Plus

                                                                       
Query: 29  ttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagagt 88
           |||| ||||||||||||||||    |||| | || ||||| |||||||| || || ||||
Sbjct: 287 ttgagctttatgccgagaaggttaacaacagaggtctctgtgccatcgctcaggctgagt 346

                                                                
Query: 89  cactccgatacaagctccttggaggccttgctgtccgcanggcttgctatggt 141
           |  | || |||||||| ||||| || || ||||| || | |||||| ||||||
Sbjct: 347 ctttacgttacaagcttcttggtggtctcgctgttcgtagggcttgatatggt 399
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>gb|AC092218.2| Drosophila melanogaster clone BACR12B06, complete sequence
          Length = 164565

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 105   ccttggaggccttgctgtcc 124
             ||||||||||||||||||||
Sbjct: 25905 ccttggaggccttgctgtcc 25886
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>gb|AY389965.1| Gallus gallus ribosomal protein S3 mRNA, partial cds
          Length = 634

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 71/89 (79%)
 Strand = Plus / Plus

                                                                       
Query: 26  gcgttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcag 85
           ||||||| || |||||||||||||  | || | | || || || ||||||||||| ||||
Sbjct: 219 gcgttgagctctatgccgagaaggtggccaccagaggtctgtgtgccatcgcccaggcag 278

                                        
Query: 86  agtcactccgatacaagctccttggaggc 114
           |||| ||  | |||||||| || ||||||
Sbjct: 279 agtccctgaggtacaagcttctgggaggc 307
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>ref|XM_793211.1| PREDICTED: Strongylocentrotus purpuratus similar to ribosomal
           protein S3 (LOC593744), mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 45/54 (83%)
 Strand = Plus / Plus

                                                                 
Query: 27  cgttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgccca 80
           |||||| || ||||| |||||||  | || |||||| ||||| |||||||||||
Sbjct: 254 cgttgagctgtatgctgagaaggttgccacccgtggtctctgtgccatcgccca 307
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>ref|NM_165046.1| Drosophila melanogaster B4 CG9239-RB, transcript variant B (B4), mRNA
          Length = 5743

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ccttggaggccttgctgtcc 124
            ||||||||||||||||||||
Sbjct: 1220 ccttggaggccttgctgtcc 1201
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>ref|NM_057977.3| Drosophila melanogaster B4 CG9239-RA, transcript variant A (B4), mRNA
          Length = 5915

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ccttggaggccttgctgtcc 124
            ||||||||||||||||||||
Sbjct: 1392 ccttggaggccttgctgtcc 1373
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>gb|AY061420.1| Drosophila melanogaster LD35137 full length cDNA
          Length = 5252

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 ccttggaggccttgctgtcc 124
           ||||||||||||||||||||
Sbjct: 711 ccttggaggccttgctgtcc 692
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>gb|AY060445.1| Drosophila melanogaster LD48089 full length cDNA
          Length = 4359

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ccttggaggccttgctgtcc 124
            ||||||||||||||||||||
Sbjct: 1380 ccttggaggccttgctgtcc 1361
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>emb|CR353973.1| Gallus gallus finished cDNA, clone ChEST9g22
          Length = 815

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 71/89 (79%)
 Strand = Plus / Plus

                                                                       
Query: 26  gcgttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcag 85
           ||||||| || |||||||||||||  | || | | || || || ||||||||||| ||||
Sbjct: 259 gcgttgagctctatgccgagaaggtggccaccagaggtctgtgtgccatcgcccaggcag 318

                                        
Query: 86  agtcactccgatacaagctccttggaggc 114
           |||| ||  | |||||||| || ||||||
Sbjct: 319 agtccctgaggtacaagcttctgggaggc 347
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>emb|CR353589.1| Gallus gallus finished cDNA, clone ChEST57i12
          Length = 830

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 71/89 (79%)
 Strand = Plus / Plus

                                                                       
Query: 26  gcgttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcag 85
           ||||||| || |||||||||||||  | || | | || || || ||||||||||| ||||
Sbjct: 273 gcgttgagctctatgccgagaaggtggccaccagaggtctgtgtgccatcgcccaggcag 332

                                        
Query: 86  agtcactccgatacaagctccttggaggc 114
           |||| ||  | |||||||| || ||||||
Sbjct: 333 agtccctgaggtacaagcttctgggaggc 361
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>emb|CR352745.1| Gallus gallus finished cDNA, clone ChEST10e18
          Length = 822

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 71/89 (79%)
 Strand = Plus / Plus

                                                                       
Query: 26  gcgttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcag 85
           ||||||| || |||||||||||||  | || | | || || || ||||||||||| ||||
Sbjct: 261 gcgttgagctctatgccgagaaggtggccaccagaggtctgtgtgccatcgcccaggcag 320

                                        
Query: 86  agtcactccgatacaagctccttggaggc 114
           |||| ||  | |||||||| || ||||||
Sbjct: 321 agtccctgaggtacaagcttctgggaggc 349
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>gb|AE003640.4| Drosophila melanogaster chromosome 2L, section 49 of 83 of the complete
              sequence
          Length = 271118

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    ccttggaggccttgctgtcc 124
              ||||||||||||||||||||
Sbjct: 127042 ccttggaggccttgctgtcc 127061
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>gb|AF022364.1|AF022364 Drosophila melanogaster B4 mRNA, complete cds
          Length = 5971

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ccttggaggccttgctgtcc 124
            ||||||||||||||||||||
Sbjct: 1378 ccttggaggccttgctgtcc 1359
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>gb|AY389945.1| Latimeria chalumnae ribosomal protein S3 mRNA, partial cds
          Length = 634

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 42/50 (84%)
 Strand = Plus / Plus

                                                             
Query: 64  ctctgcgccatcgcccangcagagtcactccgatacaagctccttggagg 113
           ||||| ||||||||||| || ||||| || || |||||||| || |||||
Sbjct: 257 ctctgtgccatcgcccaggcggagtctctgcgttacaagctgctaggagg 306
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>gb|AC124738.5| Mus musculus BAC clone RP23-344C15 from chromosome 14, complete sequence
          Length = 204590

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 96     atacaagctccttggaggc 114
              |||||||||||||||||||
Sbjct: 179991 atacaagctccttggaggc 179973
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>gb|AC132244.3| Mus musculus BAC clone RP24-419I10 from chromosome 14, complete sequence
          Length = 185581

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     atacaagctccttggaggc 114
              |||||||||||||||||||
Sbjct: 137103 atacaagctccttggaggc 137121
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>gb|AC133207.3| Mus musculus BAC clone RP23-116L23 from chromosome 10, complete sequence
          Length = 222101

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    tccttggaggccttgctgt 122
              |||||||||||||||||||
Sbjct: 191340 tccttggaggccttgctgt 191358
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>gb|AC087891.12| Mus musculus Strain C57BL6/J Chromosome 10 RP23-440N1, complete sequence
          Length = 195052

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    tccttggaggccttgctgt 122
              |||||||||||||||||||
Sbjct: 132910 tccttggaggccttgctgt 132892
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>gb|AY513653.1| Ostrinia nubilalis ribosomal protein S3 (rps3) mRNA, partial cds
          Length = 374

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                     
Query: 64  ctctgcgccatcgcccangcagagtc 89
           |||||||||||||| || ||||||||
Sbjct: 202 ctctgcgccatcgcgcaagcagagtc 227
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>gb|AY130362.1| Branchiostoma lanceolatum ribosomal protein S3-like mRNA, partial
           sequence
          Length = 632

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 76/96 (79%)
 Strand = Plus / Plus

                                                                       
Query: 28  gttgaactttatgccgagaaggncgtcaaccgtggnctctgcgccatcgcccangcagag 87
           ||||| || |||||||||||||  | | | ||||| || || ||||| ||||| || |||
Sbjct: 219 gttgagctgtatgccgagaaggttgcccagcgtggtctgtgtgccattgcccaggccgag 278

                                               
Query: 88  tcactccgatacaagctccttggaggccttgctgtc 123
           || || || |||||||| || || || |||||||||
Sbjct: 279 tctcttcggtacaagctactcggtggtcttgctgtc 314
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>gb|U12708.1|MSU12708 Manduca sexta ribosomal protein S3 mRNA, complete cds
          Length = 778

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 29/33 (87%)
 Strand = Plus / Plus

                                            
Query: 57  ccgtggnctctgcgccatcgcccangcagagtc 89
           |||||| |||||||||||||| || || |||||
Sbjct: 301 ccgtggtctctgcgccatcgctcaggccgagtc 333


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 492,879
Number of Sequences: 3902068
Number of extensions: 492879
Number of successful extensions: 29100
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 28941
Number of HSP's gapped (non-prelim): 152
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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