ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19h23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
2dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
3ref|XM_550073.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
4dbj|AK073130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
5ref|NM_145536.1| Mus musculus cDNA sequence BC020535 (BC020535),... 46 0.11
6emb|AL928862.13| Mouse DNA sequence from clone RP23-88J10 on chr... 46 0.11
7gb|BC020535.1| Mus musculus cDNA sequence BC020535, mRNA (cDNA c... 46 0.11
8ref|XM_475178.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
9gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
10gb|AY023296.1| Oryza sativa microsatellite MRG5621 containing (G... 42 1.8
11gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
12gb|AC125118.5| Mus musculus BAC clone RP24-264B17 from chromosom... 42 1.8
13emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 i... 42 1.8
14gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome... 42 1.8
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
16gb|BC042065.1| Homo sapiens, clone IMAGE:5729106, mRNA 42 1.8
17dbj|AK100484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
18gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.8
19ref|NM_112706.2| Arabidopsis thaliana phosphatidate phosphatase ... 40 7.0
20ref|NM_111128.1| Arabidopsis thaliana LPP3; phosphatidate phosph... 40 7.0
21gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.0
22ref|NM_172946.1| Mus musculus RIKEN cDNA 6330509G02 gene (633050... 40 7.0
23gb|BC079890.1| Mus musculus RIKEN cDNA 6330509G02 gene, mRNA (cD... 40 7.0
24gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, comp... 40 7.0
25gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.0
26ref|XM_743284.1| Aspergillus fumigatus Af293 hypothetical protei... 40 7.0
27emb|CT025834.1| uncultured sulfate-reducing bacterium, foshr42c9... 40 7.0
28ref|XM_570656.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 7.0
29gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC... 40 7.0
30gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 7.0
31gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, comple... 40 7.0
32emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC... 40 7.0
33gb|DP000042.1| Lemur catta target 106 genomic scaffold 40 7.0
34dbj|AK078098.1| Mus musculus adult male medulla oblongata cDNA, ... 40 7.0
35gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.0
36dbj|AK031954.1| Mus musculus adult male medulla oblongata cDNA, ... 40 7.0
37dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
39gb|AE004852.1| Pseudomonas aeruginosa PAO1, section 413 of 529 o... 40 7.0
40gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, comp... 40 7.0
41gb|AY087632.1| Arabidopsis thaliana clone 37231 mRNA, complete s... 40 7.0
42gb|AY084915.1| Arabidopsis thaliana clone 121374 mRNA, complete ... 40 7.0
43gb|AF165891.1|AF165891 Vigna unguiculata phosphatidic acid phosp... 40 7.0
44gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, compl... 40 7.0
45dbj|AP000414.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.0
46emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 i... 40 7.0
47emb|BX927070.10| Zebrafish DNA sequence from clone DKEY-180K24 i... 40 7.0
48emb|Z68219.1|CET05A1 Caenorhabditis elegans Cosmid T05A1, comple... 40 7.0
49gb|L49438.1|CBYNMOB Chelatobacter heintzii NTA monooxygenase com... 40 7.0
50emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on ch... 40 7.0 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 134/166 (80%)
 Strand = Plus / Plus

                                                                           
Query: 261     tggccagaaagcacacgtatgactgggtcgntcttattctcctagctgctgtcgnggtcg 320
               |||||||||| |||  | |||| ||||||| ||||||| | || ||||| || | | | |
Sbjct: 2097634 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 2097693

                                                                           
Query: 321     tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 380
                ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 2097694 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 2097753

                                                             
Query: 381     ggtacccggtgaaacagagtactgtgcctgcatgggctgtccctgt 426
               | |||||||||||||| || ||||| || ||||||| ||| |||||
Sbjct: 2097754 gttacccggtgaaacaaagcactgtaccagcatggggtgttcctgt 2097799



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 473     gctagaagagatgtctatgatcttcaccacgcaac 507
               ||||| |||||||||||||||||||| ||||||||
Sbjct: 2097937 gctaggagagatgtctatgatcttcatcacgcaac 2097971
to top
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 134/166 (80%)
 Strand = Plus / Plus

                                                                         
Query: 261   tggccagaaagcacacgtatgactgggtcgntcttattctcctagctgctgtcgnggtcg 320
             |||||||||| |||  | |||| ||||||| ||||||| | || ||||| || | | | |
Sbjct: 18746 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 18805

                                                                         
Query: 321   tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 380
              ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 18806 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 18865

                                                           
Query: 381   ggtacccggtgaaacagagtactgtgcctgcatgggctgtccctgt 426
             | |||||||||||||| || ||||| || ||||||| ||| |||||
Sbjct: 18866 gttacccggtgaaacaaagcactgtaccagcatggggtgttcctgt 18911



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 473   gctagaagagatgtctatgatcttcaccacgcaac 507
             ||||| |||||||||||||||||||| ||||||||
Sbjct: 19049 gctaggagagatgtctatgatcttcatcacgcaac 19083
to top
>ref|XM_550073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 126/156 (80%)
 Strand = Plus / Plus

                                                                       
Query: 261 tggccagaaagcacacgtatgactgggtcgntcttattctcctagctgctgtcgnggtcg 320
           |||||||||| |||  | |||| ||||||| ||||||| | || ||||| || | | | |
Sbjct: 410 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 469

                                                                       
Query: 321 tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 380
            ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 470 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 529

                                               
Query: 381 ggtacccggtgaaacagagtactgtgcctgcatggg 416
           | |||||||||||||| || ||||| || |||||||
Sbjct: 530 gttacccggtgaaacaaagcactgtaccagcatggg 565



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 473 gctagaagagatgtctatgatcttcaccacgcaacgctaggtgt 516
           ||||| |||||||||||||||||||| ||||||||  |||||||
Sbjct: 622 gctaggagagatgtctatgatcttcatcacgcaacattaggtgt 665
to top
>dbj|AK073130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011L13, full
           insert sequence
          Length = 1578

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 126/156 (80%)
 Strand = Plus / Plus

                                                                       
Query: 261 tggccagaaagcacacgtatgactgggtcgntcttattctcctagctgctgtcgnggtcg 320
           |||||||||| |||  | |||| ||||||| ||||||| | || ||||| || | | | |
Sbjct: 410 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 469

                                                                       
Query: 321 tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 380
            ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 470 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 529

                                               
Query: 381 ggtacccggtgaaacagagtactgtgcctgcatggg 416
           | |||||||||||||| || ||||| || |||||||
Sbjct: 530 gttacccggtgaaacaaagcactgtaccagcatggg 565



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 473 gctagaagagatgtctatgatcttcaccacgcaacgctaggtgt 516
           ||||| |||||||||||||||||||| ||||||||  |||||||
Sbjct: 622 gctaggagagatgtctatgatcttcatcacgcaacattaggtgt 665
to top
>ref|NM_145536.1| Mus musculus cDNA sequence BC020535 (BC020535), mRNA
          Length = 2319

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 71 gccaccctcctctccccctccag 93
          |||||||||||||||||||||||
Sbjct: 29 gccaccctcctctccccctccag 7
to top
>emb|AL928862.13| Mouse DNA sequence from clone RP23-88J10 on chromosome 2, complete
             sequence
          Length = 143650

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 71    gccaccctcctctccccctccag 93
             |||||||||||||||||||||||
Sbjct: 69776 gccaccctcctctccccctccag 69754
to top
>gb|BC020535.1| Mus musculus cDNA sequence BC020535, mRNA (cDNA clone MGC:19360
          IMAGE:4240594), complete cds
          Length = 2319

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                 
Query: 71 gccaccctcctctccccctccag 93
          |||||||||||||||||||||||
Sbjct: 29 gccaccctcctctccccctccag 7
to top
>ref|XM_475178.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1317

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 72 ccaccctcctctccccctcca 92
          |||||||||||||||||||||
Sbjct: 40 ccaccctcctctccccctcca 20
to top
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05,
              complete sequence
          Length = 178013

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 72     ccaccctcctctccccctcca 92
              |||||||||||||||||||||
Sbjct: 171978 ccaccctcctctccccctcca 171958
to top
>gb|AY023296.1| Oryza sativa microsatellite MRG5621 containing (GGC)X10, genomic
           sequence
          Length = 230

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  ccaccctcctctccccctcca 92
           |||||||||||||||||||||
Sbjct: 205 ccaccctcctctccccctcca 185
to top
>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01,
            complete sequence
          Length = 88352

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 72   ccaccctcctctccccctcca 92
            |||||||||||||||||||||
Sbjct: 4266 ccaccctcctctccccctcca 4246
to top
>gb|AC125118.5| Mus musculus BAC clone RP24-264B17 from chromosome 1, complete sequence
          Length = 177149

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    caggataggatgcagcaggtt 229
              |||||||||||||||||||||
Sbjct: 174607 caggataggatgcagcaggtt 174627
to top
>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13,
              complete sequence
          Length = 219918

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 209    caggataggatgcagcaggtt 229
              |||||||||||||||||||||
Sbjct: 190013 caggataggatgcagcaggtt 190033
to top
>gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome 1, complete sequence
          Length = 180773

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   caggataggatgcagcaggtt 229
             |||||||||||||||||||||
Sbjct: 29182 caggataggatgcagcaggtt 29202
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 72       ccaccctcctctccccctcca 92
                |||||||||||||||||||||
Sbjct: 18698863 ccaccctcctctccccctcca 18698843
to top
>gb|BC042065.1| Homo sapiens, clone IMAGE:5729106, mRNA
          Length = 1630

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 163 ctactcacagaccactgaggc 183
           |||||||||||||||||||||
Sbjct: 301 ctactcacagaccactgaggc 321
to top
>dbj|AK100484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097B07, full
           insert sequence
          Length = 1971

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 72  ccaccctcctctccccctcca 92
           |||||||||||||||||||||
Sbjct: 360 ccaccctcctctccccctcca 340
to top
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      tcctgcggcccgccgtcgccc 26
              |||||||||||||||||||||
Sbjct: 482692 tcctgcggcccgccgtcgccc 482712
to top
>ref|NM_112706.2| Arabidopsis thaliana phosphatidate phosphatase AT3G18220 mRNA,
           complete cds
          Length = 1264

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 477 gaagagatgtctatgatcttcaccacgc 504
           |||||||||| ||||||||||| |||||
Sbjct: 445 gaagagatgtttatgatcttcatcacgc 472
to top
>ref|NM_111128.1| Arabidopsis thaliana LPP3; phosphatidate phosphatase AT3G02600
           (LPP3) mRNA, complete cds
          Length = 1538

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 477 gaagagatgtctatgatcttcaccacgc 504
           |||||||||| ||||||||||| |||||
Sbjct: 602 gaagagatgtttatgatcttcatcacgc 629
to top
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 15      ccgccgtcgccctccccctc 34
               ||||||||||||||||||||
Sbjct: 1672975 ccgccgtcgccctccccctc 1672994
to top
>ref|NM_172946.1| Mus musculus RIKEN cDNA 6330509G02 gene (6330509G02Rik), mRNA
          Length = 2736

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ccaccctcctctccccctcc 91
            ||||||||||||||||||||
Sbjct: 2388 ccaccctcctctccccctcc 2407
to top
>gb|BC079890.1| Mus musculus RIKEN cDNA 6330509G02 gene, mRNA (cDNA clone MGC:100296
            IMAGE:30360088), complete cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ccaccctcctctccccctcc 91
            ||||||||||||||||||||
Sbjct: 2381 ccaccctcctctccccctcc 2400
to top
>gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, complete sequence
          Length = 195811

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     caccctcctctccccctcca 92
              ||||||||||||||||||||
Sbjct: 145341 caccctcctctccccctcca 145322
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 10       gcggcccgccgtcgccctcc 29
                ||||||||||||||||||||
Sbjct: 13984155 gcggcccgccgtcgccctcc 13984136
to top
>ref|XM_743284.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g00570)
           partial mRNA
          Length = 702

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 146 actccattcacgaagaactactca 169
           ||||| ||||||||||||||||||
Sbjct: 593 actcccttcacgaagaactactca 616
to top
>emb|CT025834.1| uncultured sulfate-reducing bacterium, foshr42c9, complete sequence
          Length = 39771

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    cgtcgccaccctcctctccc 86
             ||||||||||||||||||||
Sbjct: 11923 cgtcgccaccctcctctccc 11904
to top
>ref|XM_570656.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND06070) partial mRNA
          Length = 1412

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 15  ccgccgtcgccctccccctc 34
           ||||||||||||||||||||
Sbjct: 230 ccgccgtcgccctccccctc 249
to top
>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
             complete sequence
          Length = 103904

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 477   gaagagatgtctatgatcttcaccacgc 504
             |||||||||| ||||||||||| |||||
Sbjct: 68938 gaagagatgtttatgatcttcatcacgc 68965
to top
>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    gcggcccgccgtcgccctcc 29
             ||||||||||||||||||||
Sbjct: 27327 gcggcccgccgtcgccctcc 27346
to top
>gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, complete sequence
          Length = 90583

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   caccctcctctccccctcca 92
            ||||||||||||||||||||
Sbjct: 7178 caccctcctctccccctcca 7159
to top
>emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome
             5 of Podospora anserina
          Length = 156244

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    gcccgccgtcgccctccccc 32
             ||||||||||||||||||||
Sbjct: 97240 gcccgccgtcgccctccccc 97259
to top
>gb|DP000042.1| Lemur catta target 106 genomic scaffold
          Length = 452647

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    ctgtgcctgcatgggctgtc 421
              ||||||||||||||||||||
Sbjct: 385857 ctgtgcctgcatgggctgtc 385838
to top
>dbj|AK078098.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330444A09
            product:unclassifiable, full insert sequence
          Length = 2124

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ccaccctcctctccccctcc 91
            ||||||||||||||||||||
Sbjct: 1444 ccaccctcctctccccctcc 1463
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 36      ccgtcggcggcgaaaatccc 55
               ||||||||||||||||||||
Sbjct: 4091030 ccgtcggcggcgaaaatccc 4091011
to top
>dbj|AK031954.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330509G02 product:hypothetical
            protein, full insert sequence
          Length = 2736

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ccaccctcctctccccctcc 91
            ||||||||||||||||||||
Sbjct: 2388 ccaccctcctctccccctcc 2407
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 15       ccgccgtcgccctccccctc 34
                ||||||||||||||||||||
Sbjct: 20153840 ccgccgtcgccctccccctc 20153859
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 10       gcggcccgccgtcgccctcc 29
                ||||||||||||||||||||
Sbjct: 13979130 gcggcccgccgtcgccctcc 13979111
to top
>gb|AE004852.1| Pseudomonas aeruginosa PAO1, section 413 of 529 of the complete
          genome
          Length = 10542

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 43 cggcgaaaatccccgcttcc 62
          ||||||||||||||||||||
Sbjct: 79 cggcgaaaatccccgcttcc 60
to top
>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence
          Length = 204493

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 452   gtcttcatagcactgtatgt 471
             ||||||||||||||||||||
Sbjct: 84109 gtcttcatagcactgtatgt 84090
to top
>gb|AY087632.1| Arabidopsis thaliana clone 37231 mRNA, complete sequence
          Length = 1209

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 477 gaagagatgtctatgatcttcaccacgc 504
           |||||||||| ||||||||||| |||||
Sbjct: 446 gaagagatgtttatgatcttcatcacgc 473
to top
>gb|AY084915.1| Arabidopsis thaliana clone 121374 mRNA, complete sequence
          Length = 1538

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 477 gaagagatgtctatgatcttcaccacgc 504
           |||||||||| ||||||||||| |||||
Sbjct: 602 gaagagatgtttatgatcttcatcacgc 629
to top
>gb|AF165891.1|AF165891 Vigna unguiculata phosphatidic acid phosphatase alpha mRNA,
           complete cds
          Length = 1485

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 479 agagatgtctatgatcttca 498
           ||||||||||||||||||||
Sbjct: 585 agagatgtctatgatcttca 604
to top
>gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, complete sequence
          Length = 79230

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    caccctcctctccccctcca 92
             ||||||||||||||||||||
Sbjct: 58611 caccctcctctccccctcca 58592
to top
>dbj|AP000414.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE15
          Length = 34067

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 477 gaagagatgtctatgatcttcaccacgc 504
           |||||||||| ||||||||||| |||||
Sbjct: 916 gaagagatgtttatgatcttcatcacgc 943
to top
>emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 in linkage group 22,
              complete sequence
          Length = 194465

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    aggataggatgcagcaggtt 229
              ||||||||||||||||||||
Sbjct: 108885 aggataggatgcagcaggtt 108866
to top
>emb|BX927070.10| Zebrafish DNA sequence from clone DKEY-180K24 in linkage group 22,
             complete sequence
          Length = 71970

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   aggataggatgcagcaggtt 229
             ||||||||||||||||||||
Sbjct: 67369 aggataggatgcagcaggtt 67388
to top
>emb|Z68219.1|CET05A1 Caenorhabditis elegans Cosmid T05A1, complete sequence
          Length = 31678

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cagcacacggttcagacgca 249
             ||||||||||||||||||||
Sbjct: 12141 cagcacacggttcagacgca 12122
to top
>gb|L49438.1|CBYNMOB Chelatobacter heintzii NTA monooxygenase component B (nmoB), NTA
            monooxygenase component A (nmoA), regulatory protein
            (nmoR) and transposase (nmoT) genes, complete cds
          Length = 5245

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  gatgcagcaggttcagcaca 236
            ||||||||||||||||||||
Sbjct: 5037 gatgcagcaggttcagcaca 5018
to top
>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete
              sequence
          Length = 194872

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     ccaccctcctctccccctcc 91
              ||||||||||||||||||||
Sbjct: 128906 ccaccctcctctccccctcc 128925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,680,849
Number of Sequences: 3902068
Number of extensions: 3680849
Number of successful extensions: 77446
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77122
Number of HSP's gapped (non-prelim): 324
length of query: 519
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 496
effective length of database: 17,143,297,704
effective search space: 8503075661184
effective search space used: 8503075661184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top