ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19h12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
2dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
3ref|XM_550073.1| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
4dbj|AK073130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
5ref|NM_145536.1| Mus musculus cDNA sequence BC020535 (BC020535),... 46 0.14
6emb|AL928862.13| Mouse DNA sequence from clone RP23-88J10 on chr... 46 0.14
7gb|BC020535.1| Mus musculus cDNA sequence BC020535, mRNA (cDNA c... 46 0.14
8ref|XM_475178.1| Oryza sativa (japonica cultivar-group), predic... 42 2.1
9gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
10gb|AY023296.1| Oryza sativa microsatellite MRG5621 containing (G... 42 2.1
11gb|AC122792.10| Mus musculus, clone RP24-268A16, complete sequence 42 2.1
12gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
13gb|AC125118.5| Mus musculus BAC clone RP24-264B17 from chromosom... 42 2.1
14emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 i... 42 2.1
15gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome... 42 2.1
16dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
17gb|BC042065.1| Homo sapiens, clone IMAGE:5729106, mRNA 42 2.1
18dbj|AK100484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.1
19gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 2.1
20ref|NM_112706.2| Arabidopsis thaliana phosphatidate phosphatase ... 40 8.4
21ref|NM_111128.1| Arabidopsis thaliana LPP3; phosphatidate phosph... 40 8.4
22gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.4
23ref|NM_172946.1| Mus musculus RIKEN cDNA 6330509G02 gene (633050... 40 8.4
24gb|BC079890.1| Mus musculus RIKEN cDNA 6330509G02 gene, mRNA (cD... 40 8.4
25gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, comp... 40 8.4
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.4
27emb|CT025613.9| Mouse DNA sequence from clone RP23-208M16 on chr... 40 8.4
28ref|XM_743284.1| Aspergillus fumigatus Af293 hypothetical protei... 40 8.4
29emb|CT025834.1| uncultured sulfate-reducing bacterium, foshr42c9... 40 8.4
30emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 i... 40 8.4
31ref|XM_570656.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 8.4
32gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC... 40 8.4
33gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 8.4
34gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, comple... 40 8.4
35emb|AL121718.8|HSJ390M24 Human DNA sequence from clone RP3-390M2... 40 8.4
36emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC... 40 8.4
37gb|AC158749.5| Mus musculus chromosome 7, clone RP23-285C18, com... 40 8.4
38gb|AC171140.2| Helobdella robusta clone CH306-1B2, complete sequ... 40 8.4
39emb|CR388391.4| Mouse DNA sequence from clone RP23-293H4 on chro... 40 8.4
40gb|DP000042.1| Lemur catta target 106 genomic scaffold 40 8.4
41dbj|AK078098.1| Mus musculus adult male medulla oblongata cDNA, ... 40 8.4
42gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 8.4
43dbj|AK031954.1| Mus musculus adult male medulla oblongata cDNA, ... 40 8.4
44dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.4
46gb|AE004852.1| Pseudomonas aeruginosa PAO1, section 413 of 529 o... 40 8.4
47gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, comp... 40 8.4
48gb|AY087632.1| Arabidopsis thaliana clone 37231 mRNA, complete s... 40 8.4
49gb|AY084915.1| Arabidopsis thaliana clone 121374 mRNA, complete ... 40 8.4
50gb|AF165891.1|AF165891 Vigna unguiculata phosphatidic acid phosp... 40 8.4
51gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, compl... 40 8.4
52dbj|AP000414.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.4
53emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 i... 40 8.4
54emb|BX927070.10| Zebrafish DNA sequence from clone DKEY-180K24 i... 40 8.4
55gb|AC134436.4| Mus musculus BAC clone RP24-439M12 from 13, compl... 40 8.4
56emb|Z68219.1|CET05A1 Caenorhabditis elegans Cosmid T05A1, comple... 40 8.4
57gb|L49438.1|CBYNMOB Chelatobacter heintzii NTA monooxygenase com... 40 8.4
58emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on ch... 40 8.4 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 136/166 (81%)
 Strand = Plus / Plus

                                                                           
Query: 296     tggccagaaagcacacgtatgactgggtcgttcttattctcctagctgctgtcgtggtcg 355
               |||||||||| |||  | |||| ||||||||||||||| | || ||||| || ||| | |
Sbjct: 2097634 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 2097693

                                                                           
Query: 356     tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 415
                ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 2097694 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 2097753

                                                             
Query: 416     ggtacccggtgaaacagagtactgtgcctgcatgggctgtccctgt 461
               | |||||||||||||| || ||||| || ||||||| ||| |||||
Sbjct: 2097754 gttacccggtgaaacaaagcactgtaccagcatggggtgttcctgt 2097799



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                  
Query: 508     gctagaagagatgtctatgatcttcaccacgcaac 542
               ||||| |||||||||||||||||||| ||||||||
Sbjct: 2097937 gctaggagagatgtctatgatcttcatcacgcaac 2097971
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 136/166 (81%)
 Strand = Plus / Plus

                                                                         
Query: 296   tggccagaaagcacacgtatgactgggtcgttcttattctcctagctgctgtcgtggtcg 355
             |||||||||| |||  | |||| ||||||||||||||| | || ||||| || ||| | |
Sbjct: 18746 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 18805

                                                                         
Query: 356   tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 415
              ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 18806 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 18865

                                                           
Query: 416   ggtacccggtgaaacagagtactgtgcctgcatgggctgtccctgt 461
             | |||||||||||||| || ||||| || ||||||| ||| |||||
Sbjct: 18866 gttacccggtgaaacaaagcactgtaccagcatggggtgttcctgt 18911



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 508   gctagaagagatgtctatgatcttcaccacgcaac 542
             ||||| |||||||||||||||||||| ||||||||
Sbjct: 19049 gctaggagagatgtctatgatcttcatcacgcaac 19083
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>ref|XM_550073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1578

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 296 tggccagaaagcacacgtatgactgggtcgttcttattctcctagctgctgtcgtggtcg 355
           |||||||||| |||  | |||| ||||||||||||||| | || ||||| || ||| | |
Sbjct: 410 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 469

                                                                       
Query: 356 tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 415
            ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 470 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 529

                                               
Query: 416 ggtacccggtgaaacagagtactgtgcctgcatggg 451
           | |||||||||||||| || ||||| || |||||||
Sbjct: 530 gttacccggtgaaacaaagcactgtaccagcatggg 565



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 508 gctagaagagatgtctatgatcttcaccacgcaacgctaggtgt 551
           ||||| |||||||||||||||||||| ||||||||  |||||||
Sbjct: 622 gctaggagagatgtctatgatcttcatcacgcaacattaggtgt 665
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>dbj|AK073130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011L13, full
           insert sequence
          Length = 1578

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 128/156 (82%)
 Strand = Plus / Plus

                                                                       
Query: 296 tggccagaaagcacacgtatgactgggtcgttcttattctcctagctgctgtcgtggtcg 355
           |||||||||| |||  | |||| ||||||||||||||| | || ||||| || ||| | |
Sbjct: 410 tggccagaaatcacctgcatgattgggtcgttcttattttacttgctgcagttgtgattg 469

                                                                       
Query: 356 tcctgcattatgctcccccgtttaaccggttcgtcgggaaggatataatgactgatatta 415
            ||||||||  ||||| || |||| |||||| || ||||||||||| |||||| || |||
Sbjct: 470 ccctgcatttcgctcctccatttagccggtttgttgggaaggatatgatgacttatgtta 529

                                               
Query: 416 ggtacccggtgaaacagagtactgtgcctgcatggg 451
           | |||||||||||||| || ||||| || |||||||
Sbjct: 530 gttacccggtgaaacaaagcactgtaccagcatggg 565



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                       
Query: 508 gctagaagagatgtctatgatcttcaccacgcaacgctaggtgt 551
           ||||| |||||||||||||||||||| ||||||||  |||||||
Sbjct: 622 gctaggagagatgtctatgatcttcatcacgcaacattaggtgt 665
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>ref|NM_145536.1| Mus musculus cDNA sequence BC020535 (BC020535), mRNA
          Length = 2319

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 106 gccaccctcctctccccctccag 128
           |||||||||||||||||||||||
Sbjct: 29  gccaccctcctctccccctccag 7
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>emb|AL928862.13| Mouse DNA sequence from clone RP23-88J10 on chromosome 2, complete
             sequence
          Length = 143650

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 106   gccaccctcctctccccctccag 128
             |||||||||||||||||||||||
Sbjct: 69776 gccaccctcctctccccctccag 69754
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>gb|BC020535.1| Mus musculus cDNA sequence BC020535, mRNA (cDNA clone MGC:19360
           IMAGE:4240594), complete cds
          Length = 2319

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 106 gccaccctcctctccccctccag 128
           |||||||||||||||||||||||
Sbjct: 29  gccaccctcctctccccctccag 7
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>ref|XM_475178.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1317

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 ccaccctcctctccccctcca 127
           |||||||||||||||||||||
Sbjct: 40  ccaccctcctctccccctcca 20
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>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05,
              complete sequence
          Length = 178013

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    ccaccctcctctccccctcca 127
              |||||||||||||||||||||
Sbjct: 171978 ccaccctcctctccccctcca 171958
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>gb|AY023296.1| Oryza sativa microsatellite MRG5621 containing (GGC)X10, genomic
           sequence
          Length = 230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 ccaccctcctctccccctcca 127
           |||||||||||||||||||||
Sbjct: 205 ccaccctcctctccccctcca 185
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>gb|AC122792.10| Mus musculus, clone RP24-268A16, complete sequence
          Length = 160410

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 591    gataaagaatgcagtagggag 611
              |||||||||||||||||||||
Sbjct: 128809 gataaagaatgcagtagggag 128829
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>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01,
            complete sequence
          Length = 88352

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 107  ccaccctcctctccccctcca 127
            |||||||||||||||||||||
Sbjct: 4266 ccaccctcctctccccctcca 4246
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>gb|AC125118.5| Mus musculus BAC clone RP24-264B17 from chromosome 1, complete sequence
          Length = 177149

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    caggataggatgcagcaggtt 264
              |||||||||||||||||||||
Sbjct: 174607 caggataggatgcagcaggtt 174627
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>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13,
              complete sequence
          Length = 219918

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 244    caggataggatgcagcaggtt 264
              |||||||||||||||||||||
Sbjct: 190013 caggataggatgcagcaggtt 190033
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>gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome 1, complete sequence
          Length = 180773

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 244   caggataggatgcagcaggtt 264
             |||||||||||||||||||||
Sbjct: 29182 caggataggatgcagcaggtt 29202
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 107      ccaccctcctctccccctcca 127
                |||||||||||||||||||||
Sbjct: 18698863 ccaccctcctctccccctcca 18698843
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>gb|BC042065.1| Homo sapiens, clone IMAGE:5729106, mRNA
          Length = 1630

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 198 ctactcacagaccactgaggc 218
           |||||||||||||||||||||
Sbjct: 301 ctactcacagaccactgaggc 321
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>dbj|AK100484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097B07, full
           insert sequence
          Length = 1971

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 107 ccaccctcctctccccctcca 127
           |||||||||||||||||||||
Sbjct: 360 ccaccctcctctccccctcca 340
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     tcctgcggcccgccgtcgccc 61
              |||||||||||||||||||||
Sbjct: 482692 tcctgcggcccgccgtcgccc 482712
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>ref|NM_112706.2| Arabidopsis thaliana phosphatidate phosphatase AT3G18220 mRNA,
           complete cds
          Length = 1264

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 512 gaagagatgtctatgatcttcaccacgc 539
           |||||||||| ||||||||||| |||||
Sbjct: 445 gaagagatgtttatgatcttcatcacgc 472
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>ref|NM_111128.1| Arabidopsis thaliana LPP3; phosphatidate phosphatase AT3G02600
           (LPP3) mRNA, complete cds
          Length = 1538

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 512 gaagagatgtctatgatcttcaccacgc 539
           |||||||||| ||||||||||| |||||
Sbjct: 602 gaagagatgtttatgatcttcatcacgc 629
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 50      ccgccgtcgccctccccctc 69
               ||||||||||||||||||||
Sbjct: 1672975 ccgccgtcgccctccccctc 1672994
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>ref|NM_172946.1| Mus musculus RIKEN cDNA 6330509G02 gene (6330509G02Rik), mRNA
          Length = 2736

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  ccaccctcctctccccctcc 126
            ||||||||||||||||||||
Sbjct: 2388 ccaccctcctctccccctcc 2407
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>gb|BC079890.1| Mus musculus RIKEN cDNA 6330509G02 gene, mRNA (cDNA clone MGC:100296
            IMAGE:30360088), complete cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  ccaccctcctctccccctcc 126
            ||||||||||||||||||||
Sbjct: 2381 ccaccctcctctccccctcc 2400
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>gb|AC146098.3| Pan troglodytes BAC clone RP43-51J12 from 7, complete sequence
          Length = 195811

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    caccctcctctccccctcca 127
              ||||||||||||||||||||
Sbjct: 145341 caccctcctctccccctcca 145322
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 45       gcggcccgccgtcgccctcc 64
                ||||||||||||||||||||
Sbjct: 13984155 gcggcccgccgtcgccctcc 13984136
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>emb|CT025613.9| Mouse DNA sequence from clone RP23-208M16 on chromosome 13, complete
              sequence
          Length = 166222

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    tggtcgtcctgcattatgct 369
              ||||||||||||||||||||
Sbjct: 146597 tggtcgtcctgcattatgct 146578
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>ref|XM_743284.1| Aspergillus fumigatus Af293 hypothetical protein (Afu3g00570)
           partial mRNA
          Length = 702

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 181 actccattcacgaagaactactca 204
           ||||| ||||||||||||||||||
Sbjct: 593 actcccttcacgaagaactactca 616
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>emb|CT025834.1| uncultured sulfate-reducing bacterium, foshr42c9, complete sequence
          Length = 39771

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   cgtcgccaccctcctctccc 121
             ||||||||||||||||||||
Sbjct: 11923 cgtcgccaccctcctctccc 11904
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>emb|BX601645.15| Zebrafish DNA sequence from clone CH211-207J7 in linkage group 6,
             complete sequence
          Length = 223513

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 582   cactgatgtgataaagaatgcagt 605
             ||||||||||||| ||||||||||
Sbjct: 73558 cactgatgtgatagagaatgcagt 73581
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>ref|XM_570656.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CND06070) partial mRNA
          Length = 1412

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 50  ccgccgtcgccctccccctc 69
           ||||||||||||||||||||
Sbjct: 230 ccgccgtcgccctccccctc 249
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>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
             complete sequence
          Length = 103904

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 512   gaagagatgtctatgatcttcaccacgc 539
             |||||||||| ||||||||||| |||||
Sbjct: 68938 gaagagatgtttatgatcttcatcacgc 68965
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    gcggcccgccgtcgccctcc 64
             ||||||||||||||||||||
Sbjct: 27327 gcggcccgccgtcgccctcc 27346
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>gb|AC006024.1| Homo sapiens PAC clone RP5-1166G19 from 7, complete sequence
          Length = 90583

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 108  caccctcctctccccctcca 127
            ||||||||||||||||||||
Sbjct: 7178 caccctcctctccccctcca 7159
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>emb|AL121718.8|HSJ390M24 Human DNA sequence from clone RP3-390M24 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 73095

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 551   ttatttttgctgtgatgatc 570
             ||||||||||||||||||||
Sbjct: 47067 ttatttttgctgtgatgatc 47048
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>emb|AL627362.2|CNS07TIX DNA centromeric region sequence from BAC DP15B03, DP38F06 of chromosome
             5 of Podospora anserina
          Length = 156244

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    gcccgccgtcgccctccccc 67
             ||||||||||||||||||||
Sbjct: 97240 gcccgccgtcgccctccccc 97259
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>gb|AC158749.5| Mus musculus chromosome 7, clone RP23-285C18, complete sequence
          Length = 237364

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 577    gctttcactgatgtgataaa 596
              ||||||||||||||||||||
Sbjct: 128344 gctttcactgatgtgataaa 128325
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>gb|AC171140.2| Helobdella robusta clone CH306-1B2, complete sequence
          Length = 105143

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 549   tgttatttttgctgtgatgatcac 572
             |||||||||||||||| |||||||
Sbjct: 61057 tgttatttttgctgtgctgatcac 61080
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>emb|CR388391.4| Mouse DNA sequence from clone RP23-293H4 on chromosome 2, complete
             sequence
          Length = 39907

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 545   taggtgttatttttgctgtg 564
             ||||||||||||||||||||
Sbjct: 35289 taggtgttatttttgctgtg 35270
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>gb|DP000042.1| Lemur catta target 106 genomic scaffold
          Length = 452647

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    ctgtgcctgcatgggctgtc 456
              ||||||||||||||||||||
Sbjct: 385857 ctgtgcctgcatgggctgtc 385838
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>dbj|AK078098.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330444A09
            product:unclassifiable, full insert sequence
          Length = 2124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  ccaccctcctctccccctcc 126
            ||||||||||||||||||||
Sbjct: 1444 ccaccctcctctccccctcc 1463
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      ccgtcggcggcgaaaatccc 90
               ||||||||||||||||||||
Sbjct: 4091030 ccgtcggcggcgaaaatccc 4091011
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>dbj|AK031954.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330509G02 product:hypothetical
            protein, full insert sequence
          Length = 2736

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  ccaccctcctctccccctcc 126
            ||||||||||||||||||||
Sbjct: 2388 ccaccctcctctccccctcc 2407
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 50       ccgccgtcgccctccccctc 69
                ||||||||||||||||||||
Sbjct: 20153840 ccgccgtcgccctccccctc 20153859
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 45       gcggcccgccgtcgccctcc 64
                ||||||||||||||||||||
Sbjct: 13979130 gcggcccgccgtcgccctcc 13979111
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>gb|AE004852.1| Pseudomonas aeruginosa PAO1, section 413 of 529 of the complete
          genome
          Length = 10542

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 78 cggcgaaaatccccgcttcc 97
          ||||||||||||||||||||
Sbjct: 79 cggcgaaaatccccgcttcc 60
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>gb|AC099489.2| Homo sapiens chromosome 16 clone CTD-3088G3, complete sequence
          Length = 204493

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 487   gtcttcatagcactgtatgt 506
             ||||||||||||||||||||
Sbjct: 84109 gtcttcatagcactgtatgt 84090
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>gb|AY087632.1| Arabidopsis thaliana clone 37231 mRNA, complete sequence
          Length = 1209

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 512 gaagagatgtctatgatcttcaccacgc 539
           |||||||||| ||||||||||| |||||
Sbjct: 446 gaagagatgtttatgatcttcatcacgc 473
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>gb|AY084915.1| Arabidopsis thaliana clone 121374 mRNA, complete sequence
          Length = 1538

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 512 gaagagatgtctatgatcttcaccacgc 539
           |||||||||| ||||||||||| |||||
Sbjct: 602 gaagagatgtttatgatcttcatcacgc 629
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>gb|AF165891.1|AF165891 Vigna unguiculata phosphatidic acid phosphatase alpha mRNA,
           complete cds
          Length = 1485

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 514 agagatgtctatgatcttca 533
           ||||||||||||||||||||
Sbjct: 585 agagatgtctatgatcttca 604
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>gb|AC113417.2| Homo sapiens chromosome 5 clone RP11-569B5, complete sequence
          Length = 79230

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   caccctcctctccccctcca 127
             ||||||||||||||||||||
Sbjct: 58611 caccctcctctccccctcca 58592
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>dbj|AP000414.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE15
          Length = 34067

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 512 gaagagatgtctatgatcttcaccacgc 539
           |||||||||| ||||||||||| |||||
Sbjct: 916 gaagagatgtttatgatcttcatcacgc 943
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>emb|CR392343.29| Zebrafish DNA sequence from clone CH211-195G6 in linkage group 22,
              complete sequence
          Length = 194465

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    aggataggatgcagcaggtt 264
              ||||||||||||||||||||
Sbjct: 108885 aggataggatgcagcaggtt 108866
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>emb|BX927070.10| Zebrafish DNA sequence from clone DKEY-180K24 in linkage group 22,
             complete sequence
          Length = 71970

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   aggataggatgcagcaggtt 264
             ||||||||||||||||||||
Sbjct: 67369 aggataggatgcagcaggtt 67388
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>gb|AC134436.4| Mus musculus BAC clone RP24-439M12 from 13, complete sequence
          Length = 128990

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   tggtcgtcctgcattatgct 369
             ||||||||||||||||||||
Sbjct: 70048 tggtcgtcctgcattatgct 70067
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>emb|Z68219.1|CET05A1 Caenorhabditis elegans Cosmid T05A1, complete sequence
          Length = 31678

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 265   cagcacacggttcagacgca 284
             ||||||||||||||||||||
Sbjct: 12141 cagcacacggttcagacgca 12122
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>gb|L49438.1|CBYNMOB Chelatobacter heintzii NTA monooxygenase component B (nmoB), NTA
            monooxygenase component A (nmoA), regulatory protein
            (nmoR) and transposase (nmoT) genes, complete cds
          Length = 5245

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  gatgcagcaggttcagcaca 271
            ||||||||||||||||||||
Sbjct: 5037 gatgcagcaggttcagcaca 5018
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>emb|AL590991.14| Mouse DNA sequence from clone RP23-255N16 on chromosome 11, complete
              sequence
          Length = 194872

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    ccaccctcctctccccctcc 126
              ||||||||||||||||||||
Sbjct: 128906 ccaccctcctctccccctcc 128925


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,595,421
Number of Sequences: 3902068
Number of extensions: 4595421
Number of successful extensions: 95117
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94730
Number of HSP's gapped (non-prelim): 387
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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