ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small n... 555 e-155
2dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 555 e-155
3dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 555 e-155
4gb|DQ019633.1| Triticum aestivum U1 snRNP-interacting 70 kDa pro... 430 e-117
5gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small n... 349 6e-93
6gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small n... 349 6e-93
7dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 349 6e-93
8ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative... 343 4e-91
9gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 289 5e-75
10gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 192 9e-46
11gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternative... 192 9e-46
12gb|AY108570.1| Zea mays PCO063456 mRNA sequence 147 5e-32
13gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
14gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 121 3e-24
17gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternative... 66 1e-07
18ref|NM_180345.1| Arabidopsis thaliana U1-70K (SPLICEOSOMAL PROTE... 50 0.008
19ref|NM_114927.2| Arabidopsis thaliana U1-70K (SPLICEOSOMAL PROTE... 50 0.008
20gb|AY094003.1| Arabidopsis thaliana AT3g50670/T3A5_50 mRNA, comp... 50 0.008
21gb|AY039874.1| Arabidopsis thaliana AT3g50670/T3A5_50 mRNA, comp... 50 0.008
22emb|BX823870.1|CNS0A6KL Arabidopsis thaliana Full-length cDNA Co... 50 0.008
23gb|U52910.1|ATU52910 Arabidopsis thaliana U1 snRNP 70K truncated... 50 0.008
24gb|M93439.1|ATHRNU1 Arabidopsis thaliana 70kDa small nuclear rib... 50 0.008
25ref|XM_633170.1| Dictyostelium discoideum hypothetical protein (... 44 0.49
26emb|AL359738.7| Human DNA sequence from clone RP11-249D14 on chr... 44 0.49
27gb|AC147964.10| Medicago truncatula clone mth2-5i18, complete se... 42 1.9
28gb|AC148484.17| Medicago truncatula clone mth2-46g10, complete s... 42 1.9
29emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, c... 40 7.7
30gb|AC024946.13| Homo sapiens chromosome 10 clone RP11-138M8, com... 40 7.7
31gb|AC024597.8| Homo sapiens chromosome 10 clone RP11-120C12, com... 40 7.7
32gb|AC024598.7| Homo sapiens chromosome 10 clone RP11-13A2, compl... 40 7.7
33emb|AL356032.4|CNS05TDD Human chromosome 14 DNA sequence BAC R-8... 40 7.7
34emb|AL355072.3|CNS05TC6 Human chromosome 14 DNA sequence BAC R-1... 40 7.7 
>gb|DQ377062.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
           ribonucleoprotein 70K mRNA, complete cds, alternatively
           spliced
          Length = 1815

 Score =  555 bits (280), Expect = e-155
 Identities = 494/566 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 188 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 247

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 248 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 307

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 308 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 367

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 368 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 427

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 428 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 487

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 488 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 547

                                                                       
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaag 421
           || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct: 548 gtcaagcgggagtttgaagcttatgggcctattaaaagggtacggcttgtgaccgacaag 607

                                                                       
Query: 422 gatacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaa 481
           || || |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct: 608 gaaacaaataaacctagaggatatgcattcatcgagtatatgcacacccgggacatgaaa 667

                                                                       
Query: 482 aatgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtg 541
           ||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 668 aatgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtg 727

                                     
Query: 542 gaacgtggtagaactgttcctaattg 567
           || ||||||||||||||||| |||||
Sbjct: 728 gagcgtggtagaactgttccaaattg 753
to top
>dbj|AK121007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023046L24, full
           insert sequence
          Length = 1798

 Score =  555 bits (280), Expect = e-155
 Identities = 494/566 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 188 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 247

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 248 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 307

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 308 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 367

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 368 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 427

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 428 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 487

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 488 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 547

                                                                       
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaag 421
           || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct: 548 gtcaagcgggagtttgaagcttatgggcctattaaaagggtacggcttgtgaccgacaag 607

                                                                       
Query: 422 gatacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaa 481
           || || |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct: 608 gaaacaaataaacctagaggatatgcattcatcgagtatatgcacacccgggacatgaaa 667

                                                                       
Query: 482 aatgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtg 541
           ||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 668 aatgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtg 727

                                     
Query: 542 gaacgtggtagaactgttcctaattg 567
           || ||||||||||||||||| |||||
Sbjct: 728 gagcgtggtagaactgttccaaattg 753
to top
>dbj|AK059504.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A09, full
           insert sequence
          Length = 1796

 Score =  555 bits (280), Expect = e-155
 Identities = 494/566 (87%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 187 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 246

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 247 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 306

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 307 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 366

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 367 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 426

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 427 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 486

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 487 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 546

                                                                       
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaag 421
           || ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct: 547 gtcaagcgggagtttgaagcttatgggcctattaaaagggtacggcttgtgaccgacaag 606

                                                                       
Query: 422 gatacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaa 481
           || || |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct: 607 gaaacaaataaacctagaggatatgcattcatcgagtatatgcacacccgggacatgaaa 666

                                                                       
Query: 482 aatgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtg 541
           ||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||
Sbjct: 667 aatgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtg 726

                                     
Query: 542 gaacgtggtagaactgttcctaattg 567
           || ||||||||||||||||| |||||
Sbjct: 727 gagcgtggtagaactgttccaaattg 752
to top
>gb|DQ019633.1| Triticum aestivum U1 snRNP-interacting 70 kDa protein (U1-70K)
           mRNA, complete cds
          Length = 1729

 Score =  430 bits (217), Expect = e-117
 Identities = 476/563 (84%)
 Strand = Plus / Plus

                                                                       
Query: 5   gggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcggcct 64
           |||||| |||| || ||||| || ||| |||||||||| |||||||||||| | ||||| 
Sbjct: 132 gggcagagccatccgacggggctgacgacgaacctgctgaagctgttcgagccacggcca 191

                                                                       
Query: 65  atgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatggcg 124
             ||||||||||||||||||  || ||||||||||| ||||||| ||| | || ||| ||
Sbjct: 192 ccgctcgagcacaagccgccgctcgagaagcgcaagttgccggcttactctggaatgtcg 251

                                                                       
Query: 125 cagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtcccaacg 184
           |||||||| ||| |||| || |||||||| ||||| |||||||| ||||||||||| || 
Sbjct: 252 cagtttgtatcgaggttcgcagagcctggtgaccccgagtatgctccgcctgtccccaca 311

                                                                       
Query: 185 tgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgca 244
           |||||||||| ||| |||||||||||||||||| |  |||||||||||||| ||||||||
Sbjct: 312 tgcgagactagggctgaaaagaaggatagaatccgtcaacttaagcttgaggaaggtgca 371

                                                                       
Query: 245 gataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccacttca 304
           | |||||  ||  ||||||| ||||| ||| ||||||||| ||| ||||||  ||||  |
Sbjct: 372 gctaaggttgctgaagagctccagaagtatgacccacaaaatgaccccaatgtcactgga 431

                                                                       
Query: 305 gatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggtt 364
           ||||| |||||||||||||| |||||| |||||   ||||||||||| |||   | ||||
Sbjct: 432 gatccatacaaaacactctttgttgcacgacttggctacgagacatccgagcagaaggtt 491

                                                                       
Query: 365 aagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaaggat 424
           ||  |||| |||||||| |||||||||||||||||||||||||||||||| |||||||  
Sbjct: 492 aaaagggactttgaagcttatgggcctattaaaagggtacggctcgtaaccgacaaggta 551

                                                                       
Query: 425 acgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaat 484
           || |||||||||||||||||||||||| ||||||||   || |||||||| ||||||| |
Sbjct: 552 acaaataaacctagaggatatgcattcgtagagtatgcacacactcgggacatgaaaagt 611

                                                                       
Query: 485 gcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtggaa 544
           ||||| ||||||||||||||||||||||| || || || ||||| || ||||| || || 
Sbjct: 612 gcttataagcaagctgatgggagaaaagtggataacaaaagggtgcttgttgacgtagag 671

                                  
Query: 545 cgtggtagaactgttcctaattg 567
           ||||||||||||||||| |||||
Sbjct: 672 cgtggtagaactgttccaaattg 694
to top
>gb|DQ377064.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
           ribonucleoprotein 70K splice variant 2 mRNA, complete
           cds, alternatively spliced
          Length = 3284

 Score =  349 bits (176), Expect = 6e-93
 Identities = 345/402 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 188 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 247

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 248 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 307

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 308 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 367

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 368 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 427

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 428 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 487

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 488 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 547

                                                     
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagggta 403
           || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 548 gtcaagcgggagtttgaagcttatgggcctattaaaagggta 589



 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Plus

                                                                        
Query: 400  ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
            ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 2055 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 2114

                                                                        
Query: 460  tatgcatactcgggatatgaaaaatgcttacaagcaagctgatgggagaaaagtagacaa 519
            |||||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2115 tatgcacacccgggacatgaaaaatgcttacaagcaagcagatgggagaaaagtggacaa 2174

                                                            
Query: 520  taagagggtactagttgatgtggaacgtggtagaactgttcctaattg 567
            || |||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 2175 taggagggtgctagttgatgtggagcgtggtagaactgttccaaattg 2222
to top
>gb|DQ377063.1| Oryza sativa (japonica cultivar-group) U1 small nuclear
           ribonucleoprotein 70K splice variant 1 mRNA, complete
           cds, alternatively spliced
          Length = 3443

 Score =  349 bits (176), Expect = 6e-93
 Identities = 345/402 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 188 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 247

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 248 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 307

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 308 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 367

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 368 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 427

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 428 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 487

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 488 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 547

                                                     
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagggta 403
           || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 548 gtcaagcgggagtttgaagcttatgggcctattaaaagggta 589



 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Plus

                                                                        
Query: 400  ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
            ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 2214 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 2273

                                                                        
Query: 460  tatgcatactcgggatatgaaaaatgcttacaagcaagctgatgggagaaaagtagacaa 519
            |||||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2274 tatgcacacccgggacatgaaaaatgcttacaagcaagcagatgggagaaaagtggacaa 2333

                                                            
Query: 520  taagagggtactagttgatgtggaacgtggtagaactgttcctaattg 567
            || |||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 2334 taggagggtgctagttgatgtggagcgtggtagaactgttccaaattg 2381
to top
>dbj|AK100686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P16, full
           insert sequence
          Length = 3436

 Score =  349 bits (176), Expect = 6e-93
 Identities = 345/402 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 199 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 258

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 259 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 318

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 319 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 378

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 379 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 438

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 439 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 498

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 499 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 558

                                                     
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagggta 403
           || ||||||||||||||||| |||||||||||||||||||||
Sbjct: 559 gtcaagcgggagtttgaagcttatgggcctattaaaagggta 600



 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Plus

                                                                        
Query: 400  ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
            ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 2225 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 2284

                                                                        
Query: 460  tatgcatactcgggatatgaaaaatgcttacaagcaagctgatgggagaaaagtagacaa 519
            |||||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 2285 tatgcacacccgggacatgaaaaatgcttacaagcaagcagatgggagaaaagtggacaa 2344

                                                            
Query: 520  taagagggtactagttgatgtggaacgtggtagaactgttcctaattg 567
            || |||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 2345 taggagggtgctagttgatgtggagcgtggtagaactgttccaaattg 2392
to top
>ref|NM_194601.1| Oryza sativa (japonica cultivar-group) putative U1 small nuclear
           ribonucleoprotein (OSJNBa0092N12.2), mRNA
          Length = 1476

 Score =  343 bits (173), Expect = 4e-91
 Identities = 342/399 (85%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 103 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 162

                                                                       
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggatg 121
           ||   ||||||   ||||||||||||| ||||||||||| ||||||||||||| ||||||
Sbjct: 163 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacactgggatg 222

                                                                       
Query: 122 gcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccca 181
           |||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || ||||| 
Sbjct: 223 gcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccacccgtcccc 282

                                                                       
Query: 182 acgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggt 241
           || |||||||| ||||| |||||||||||||| ||| | |||  ||||||||| ||||||
Sbjct: 283 acatgcgagaccaaggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggt 342

                                                                       
Query: 242 gcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccact 301
           || | ||||| |||  ||||||||||||| ||| ||||||| ||||| |||||| |||||
Sbjct: 343 gcggctaaggtggctgaagagcttcagaaatatgacccacagagtgaccccaatgccact 402

                                                                       
Query: 302 tcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagg 361
             |||||| |||||||||||||| |||||||||||||| || ||||| ||||||  ||||
Sbjct: 403 ggagatccatacaaaacactctttgttgcaagacttaactatgagacgtctgagcatagg 462

                                                  
Query: 362 gttaagcgggagtttgaagcctatgggcctattaaaagg 400
           || ||||||||||||||||| ||||||||||||||||||
Sbjct: 463 gtcaagcgggagtttgaagcttatgggcctattaaaagg 501



 Score =  214 bits (108), Expect = 2e-52
 Identities = 153/168 (91%)
 Strand = Plus / Plus

                                                                       
Query: 400 ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
           ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 585 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 644

                                                                       
Query: 460 tatgcatactcgggatatgaaaaatgcttacaagcaagctgatgggagaaaagtagacaa 519
           |||||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 645 tatgcacacccgggacatgaaaaatgcttacaagcaagcagatgggagaaaagtggacaa 704

                                                           
Query: 520 taagagggtactagttgatgtggaacgtggtagaactgttcctaattg 567
           || |||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct: 705 taggagggtgctagttgatgtggagcgtggtagaactgttccaaattg 752
to top
>gb|AY627766.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 1647

 Score =  289 bits (146), Expect = 5e-75
 Identities = 464/568 (81%), Gaps = 2/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcg 60
           ||||||||||  |||||| ||||| |||||||| |||||||| ||||| |||||  ||||
Sbjct: 148 catggggcagatccacccgacggggctcacgcccaacctgcttaagctcttcgaaccgcg 207

                                                                       
Query: 61  gcctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggat 120
            ||   ||||||| ||||||| ||  |  ||||||||||  ||||||||||||| |||||
Sbjct: 208 tccaccgctcgagtacaagcccccgctggagaagcgcaaattgccggcctacaccgggat 267

                                                                       
Query: 121 ggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccc 180
           |||||| |||||||| |  ||||| ||||| |  || ||||||||||| ||||| || ||
Sbjct: 268 ggcgcaatttgtgtctcactttgctgagcccgaggatccagagtatgctccgccagtacc 327

                                                                       
Query: 181 aacgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaagg 240
            | ||| ||||| | ||| || ||||||| ||||||  | ||   |||||| ||||||||
Sbjct: 328 caagtgtgagaccagggcagagaagaaggctagaattcgcaataataagctcgagcaagg 387

                                                                       
Query: 241 tgcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccac 300
            |||| |||||  ||  ||||||||||||| ||| ||||||||||||| |||||| | ||
Sbjct: 388 cgcagctaaggttgctgaagagcttcagaagtatgacccacaaagtgaccccaatgctac 447

                                                                       
Query: 301 ttcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtag 360
           |  |||||| |||||||||||||| ||||| |||||||| || ||||||||||||   ||
Sbjct: 448 tggagatccatacaaaacactctttgttgctagacttaactatgagacatctgagcagag 507

                                                                       
Query: 361 ggttaagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaa 420
           | | || || ||||||||||  ||||| |||||||||||||| || || |||||||| ||
Sbjct: 508 gatcaaacgcgagtttgaaggttatggtcctattaaaagggttcgtcttgtaactgagaa 567

                                                                       
Query: 421 ggatacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaa 480
            ||||| | |||||||||||||||||||||||| |||||| |||| || || || |||||
Sbjct: 568 agataccagtaaacctagaggatatgcattcattgagtatgtgcacacacgagacatgaa 627

                                                                       
Query: 481 aaatgctta-caagcaagctgatgggagaaaagtagacaataagagggtactagttgatg 539
           |||||| || | ||| ||| |||||||||||||| ||||| | ||||||| |||||||||
Sbjct: 628 aaatgcctacccagc-agcagatgggagaaaagtggacaacaggagggtattagttgatg 686

                                       
Query: 540 tggaacgtggtagaactgttcctaattg 567
           | || || || ||||||||||| |||||
Sbjct: 687 ttgagcgaggcagaactgttccaaattg 714
to top
>gb|AY627768.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3299

 Score =  192 bits (97), Expect = 9e-46
 Identities = 326/403 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcg 60
           ||||||||||  |||||| ||||| |||||||| |||||||| ||||| |||||  ||||
Sbjct: 148 catggggcagatccacccgacggggctcacgcccaacctgcttaagctcttcgaaccgcg 207

                                                                       
Query: 61  gcctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggat 120
            ||   ||||||| ||||||| ||  |  ||||||||||  ||||||||||||| |||||
Sbjct: 208 tccaccgctcgagtacaagcccccgctggagaagcgcaaattgccggcctacaccgggat 267

                                                                       
Query: 121 ggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccc 180
           |||||| |||||||| |  ||||| ||||| |  || ||||||||||| ||||| || ||
Sbjct: 268 ggcgcaatttgtgtctcactttgctgagcccgaggatccagagtatgctccgccagtacc 327

                                                                       
Query: 181 aacgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaagg 240
            | ||| ||||| | ||| || ||||||| ||||||  | ||   |||||| ||||||||
Sbjct: 328 caagtgtgagaccagggcagagaagaaggctagaattcgcaataataagctcgagcaagg 387

                                                                       
Query: 241 tgcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccac 300
            |||| |||||  ||  ||||||||||||| ||| ||||||||||||| |||||| | ||
Sbjct: 388 cgcagctaaggttgctgaagagcttcagaagtatgacccacaaagtgaccccaatgctac 447

                                                                       
Query: 301 ttcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtag 360
           |  |||||| |||||||||||||| ||||| |||||||| || ||||||||||||   ||
Sbjct: 448 tggagatccatacaaaacactctttgttgctagacttaactatgagacatctgagcagag 507

                                                      
Query: 361 ggttaagcgggagtttgaagcctatgggcctattaaaagggta 403
           | | || || ||||||||||  ||||| |||||||||||||||
Sbjct: 508 gatcaaacgcgagtttgaaggttatggtcctattaaaagggta 550



 Score =  109 bits (55), Expect = 1e-20
 Identities = 135/159 (84%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                        
Query: 410  gtaactgacaaggatacgaataaacctagaggatatgcattcatagagtatatgcatact 469
            |||||||| || ||||| | |||||||||||||||||||||||| |||||| |||| || 
Sbjct: 2209 gtaactgagaaagataccagtaaacctagaggatatgcattcattgagtatgtgcacaca 2268

                                                                        
Query: 470  cgggatatgaaaaatgctta-caagcaagctgatgggagaaaagtagacaataagagggt 528
            || || ||||||||||| || | ||| ||| |||||||||||||| ||||| | ||||||
Sbjct: 2269 cgagacatgaaaaatgcctacccagc-agcagatgggagaaaagtggacaacaggagggt 2327

                                                   
Query: 529  actagttgatgtggaacgtggtagaactgttcctaattg 567
            | |||||||||| || || || ||||||||||| |||||
Sbjct: 2328 attagttgatgttgagcgaggcagaactgttccaaattg 2366
to top
>gb|AY627767.1| Zea mays U1 snRNP mRNA, complete cds; alternatively spliced
          Length = 3463

 Score =  192 bits (97), Expect = 9e-46
 Identities = 326/403 (80%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcg 60
           ||||||||||  |||||| ||||| |||||||| |||||||| ||||| |||||  ||||
Sbjct: 148 catggggcagatccacccgacggggctcacgcccaacctgcttaagctcttcgaaccgcg 207

                                                                       
Query: 61  gcctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacacggggat 120
            ||   ||||||| ||||||| ||  |  ||||||||||  ||||||||||||| |||||
Sbjct: 208 tccaccgctcgagtacaagcccccgctggagaagcgcaaattgccggcctacaccgggat 267

                                                                       
Query: 121 ggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcctgtccc 180
           |||||| |||||||| |  ||||| ||||| |  || ||||||||||| ||||| || ||
Sbjct: 268 ggcgcaatttgtgtctcactttgctgagcccgaggatccagagtatgctccgccagtacc 327

                                                                       
Query: 181 aacgtgcgagactaaggccgaaaagaaggatagaatcaggaaacttaagcttgagcaagg 240
            | ||| ||||| | ||| || ||||||| ||||||  | ||   |||||| ||||||||
Sbjct: 328 caagtgtgagaccagggcagagaagaaggctagaattcgcaataataagctcgagcaagg 387

                                                                       
Query: 241 tgcagataaggnggccaaagagcttcagaactataacccacaaagtgatcccaataccac 300
            |||| |||||  ||  ||||||||||||| ||| ||||||||||||| |||||| | ||
Sbjct: 388 cgcagctaaggttgctgaagagcttcagaagtatgacccacaaagtgaccccaatgctac 447

                                                                       
Query: 301 ttcagatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtag 360
           |  |||||| |||||||||||||| ||||| |||||||| || ||||||||||||   ||
Sbjct: 448 tggagatccatacaaaacactctttgttgctagacttaactatgagacatctgagcagag 507

                                                      
Query: 361 ggttaagcgggagtttgaagcctatgggcctattaaaagggta 403
           | | || || ||||||||||  ||||| |||||||||||||||
Sbjct: 508 gatcaaacgcgagtttgaaggttatggtcctattaaaagggta 550



 Score =  109 bits (55), Expect = 1e-20
 Identities = 135/159 (84%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                        
Query: 410  gtaactgacaaggatacgaataaacctagaggatatgcattcatagagtatatgcatact 469
            |||||||| || ||||| | |||||||||||||||||||||||| |||||| |||| || 
Sbjct: 2373 gtaactgagaaagataccagtaaacctagaggatatgcattcattgagtatgtgcacaca 2432

                                                                        
Query: 470  cgggatatgaaaaatgctta-caagcaagctgatgggagaaaagtagacaataagagggt 528
            || || ||||||||||| || | ||| ||| |||||||||||||| ||||| | ||||||
Sbjct: 2433 cgagacatgaaaaatgcctacccagc-agcagatgggagaaaagtggacaacaggagggt 2491

                                                   
Query: 529  actagttgatgtggaacgtggtagaactgttcctaattg 567
            | |||||||||| || || || ||||||||||| |||||
Sbjct: 2492 attagttgatgttgagcgaggcagaactgttccaaattg 2530
to top
>gb|AY108570.1| Zea mays PCO063456 mRNA sequence
          Length = 1603

 Score =  147 bits (74), Expect = 5e-32
 Identities = 137/158 (86%)
 Strand = Plus / Plus

                                                                       
Query: 410 gtaactgacaaggatacgaataaacctagaggatatgcattcatagagtatatgcatact 469
           |||||||| || ||||| | |||||||||||||||||||||||| |||||| |||| || 
Sbjct: 275 gtaactgagaaagatacaagtaaacctagaggatatgcattcattgagtatgtgcacaca 334

                                                                       
Query: 470 cgggatatgaaaaatgcttacaagcaagctgatgggagaaaagtagacaataagagggta 529
           || || ||||||||||| ||||||||||| |||||||||||||| ||||| | |||||||
Sbjct: 335 cgagacatgaaaaatgcctacaagcaagcagatgggagaaaagtggacaacaggagggta 394

                                                 
Query: 530 ctagttgatgtggaacgtggtagaactgttcctaattg 567
            |||||||||| || || || ||||||||||| |||||
Sbjct: 395 ttagttgatgttgagcgaggcagaactgttccaaattg 432
to top
>gb|AC078891.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0092N12, complete sequence
          Length = 109198

 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Plus

                                                                         
Query: 483   atgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtgg 542
             |||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||
Sbjct: 14191 atgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtgg 14250

                                      
Query: 543   aacgtggtagaactgttcctaattg 567
             | ||||||||||||||||| |||||
Sbjct: 14251 agcgtggtagaactgttccaaattg 14275



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 97/113 (85%)
 Strand = Plus / Plus

                                                                         
Query: 2     atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
             ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 10926 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 10985

                                                                  
Query: 62    cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacac 114
             ||   ||||||   ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 10986 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 11038



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 400   ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
             ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 14005 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 14064

                                    
Query: 460   tatgcatactcgggatatgaaaa 482
             |||||| || ||||| |||||||
Sbjct: 14065 tatgcacacccgggacatgaaaa 14087



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Plus

                                                                         
Query: 344   gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 403
             ||||| ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 12321 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 12380



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 276   acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 335
             ||||||| ||||| |||||| |||||  |||||| |||||||||||||| ||||||||||
Sbjct: 12154 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 12213

               
Query: 336   tt 337
             ||
Sbjct: 12214 tt 12215



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                         
Query: 116   gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 175
             |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || 
Sbjct: 11200 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 11259

                                   
Query: 176   gtcccaacgtgcgagactaagg 197
             ||||| || |||||||| ||||
Sbjct: 11260 gtccccacatgcgagaccaagg 11281



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/76 (84%)
 Strand = Plus / Plus

                                                                         
Query: 195   aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggngg 254
             |||| |||||||||||||| ||| | |||  ||||||||| |||||||| | ||||| ||
Sbjct: 11992 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 12051

                             
Query: 255   ccaaagagcttcagaa 270
             |  |||||||||||||
Sbjct: 12052 ctgaagagcttcagaa 12067
to top
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
              Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                          
Query: 483    atgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtgg 542
              |||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||
Sbjct: 988363 atgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtgg 988304

                                       
Query: 543    aacgtggtagaactgttcctaattg 567
              | ||||||||||||||||| |||||
Sbjct: 988303 agcgtggtagaactgttccaaattg 988279



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                          
Query: 2      atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
              ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 991628 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 991569

                                                                   
Query: 62     cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacac 114
              ||   ||||||   ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 991568 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 991516



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                          
Query: 400    ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
              ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 988549 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 988490

                                     
Query: 460    tatgcatactcgggatatgaaaa 482
              |||||| || ||||| |||||||
Sbjct: 988489 tatgcacacccgggacatgaaaa 988467



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 344    gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 403
              ||||| ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 990233 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 990174



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                          
Query: 116    gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 175
              |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || 
Sbjct: 991354 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 991295

                                    
Query: 176    gtcccaacgtgcgagactaagg 197
              ||||| || |||||||| ||||
Sbjct: 991294 gtccccacatgcgagaccaagg 991273



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 276    acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 335
              ||||||| ||||| |||||| |||||  |||||| |||||||||||||| ||||||||||
Sbjct: 990400 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 990341

                
Query: 336    tt 337
              ||
Sbjct: 990340 tt 990339



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                          
Query: 195    aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggngg 254
              |||| |||||||||||||| ||| | |||  ||||||||| |||||||| | ||||| ||
Sbjct: 990562 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 990503

                              
Query: 255    ccaaagagcttcagaa 270
              |  |||||||||||||
Sbjct: 990502 ctgaagagcttcagaa 990487
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10,
              complete sequence
          Length = 22685906

 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                          
Query: 483    atgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtgg 542
              |||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||
Sbjct: 988363 atgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtgg 988304

                                       
Query: 543    aacgtggtagaactgttcctaattg 567
              | ||||||||||||||||| |||||
Sbjct: 988303 agcgtggtagaactgttccaaattg 988279



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                          
Query: 2      atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
              ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 991628 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 991569

                                                                   
Query: 62     cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacac 114
              ||   ||||||   ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 991568 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 991516



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                          
Query: 400    ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
              ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 988549 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 988490

                                     
Query: 460    tatgcatactcgggatatgaaaa 482
              |||||| || ||||| |||||||
Sbjct: 988489 tatgcacacccgggacatgaaaa 988467



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 344    gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 403
              ||||| ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 990233 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 990174



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                          
Query: 116    gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 175
              |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || 
Sbjct: 991354 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 991295

                                    
Query: 176    gtcccaacgtgcgagactaagg 197
              ||||| || |||||||| ||||
Sbjct: 991294 gtccccacatgcgagaccaagg 991273



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 276    acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 335
              ||||||| ||||| |||||| |||||  |||||| |||||||||||||| ||||||||||
Sbjct: 990400 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 990341

                
Query: 336    tt 337
              ||
Sbjct: 990340 tt 990339



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                          
Query: 195    aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggngg 254
              |||| |||||||||||||| ||| | |||  ||||||||| |||||||| | ||||| ||
Sbjct: 990562 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 990503

                              
Query: 255    ccaaagagcttcagaa 270
              |  |||||||||||||
Sbjct: 990502 ctgaagagcttcagaa 990487
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  121 bits (61), Expect = 3e-24
 Identities = 79/85 (92%)
 Strand = Plus / Minus

                                                                          
Query: 483    atgcttacaagcaagctgatgggagaaaagtagacaataagagggtactagttgatgtgg 542
              |||||||||||||||| |||||||||||||| ||||||| |||||| |||||||||||||
Sbjct: 988360 atgcttacaagcaagcagatgggagaaaagtggacaataggagggtgctagttgatgtgg 988301

                                       
Query: 543    aacgtggtagaactgttcctaattg 567
              | ||||||||||||||||| |||||
Sbjct: 988300 agcgtggtagaactgttccaaattg 988276



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 97/113 (85%)
 Strand = Plus / Minus

                                                                          
Query: 2      atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
              ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||| | || 
Sbjct: 991625 atggggcagggacacccgacgggcctcacccccaacctgctcaagctcttcgagccccgc 991566

                                                                   
Query: 62     cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacac 114
              ||   ||||||   ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 991565 ccgccgctcgacttcaagccgcccgtcgagaagcgcaagttgccggcctacac 991513



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                          
Query: 400    ggtacggctcgtaactgacaaggatacgaataaacctagaggatatgcattcatagagta 459
              ||||||||| || || |||||||| || |||||||||||||||||||||||||| |||||
Sbjct: 988546 ggtacggcttgtgaccgacaaggaaacaaataaacctagaggatatgcattcatcgagta 988487

                                     
Query: 460    tatgcatactcgggatatgaaaa 482
              |||||| || ||||| |||||||
Sbjct: 988486 tatgcacacccgggacatgaaaa 988464



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                          
Query: 344    gagacatctgagagtagggttaagcgggagtttgaagcctatgggcctattaaaagggta 403
              ||||| ||||||  |||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 990230 gagacgtctgagcatagggtcaagcgggagtttgaagcttatgggcctattaaaagggta 990171



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                          
Query: 116    gggatggcgcagtttgtgtcgcggtttgccgagcctggcgacccagagtatgcgccgcct 175
              |||||||||||||| ||||||| |||||| ||||| || ||||| ||||| ||||| || 
Sbjct: 991351 gggatggcgcagttcgtgtcgcagtttgcggagcccggtgaccctgagtacgcgccaccc 991292

                                    
Query: 176    gtcccaacgtgcgagactaagg 197
              ||||| || |||||||| ||||
Sbjct: 991291 gtccccacatgcgagaccaagg 991270



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 276    acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 335
              ||||||| ||||| |||||| |||||  |||||| |||||||||||||| ||||||||||
Sbjct: 990397 acccacagagtgaccccaatgccactggagatccatacaaaacactctttgttgcaagac 990338

                
Query: 336    tt 337
              ||
Sbjct: 990337 tt 990336



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                          
Query: 195    aggccgaaaagaaggatagaatcaggaaacttaagcttgagcaaggtgcagataaggngg 254
              |||| |||||||||||||| ||| | |||  ||||||||| |||||||| | ||||| ||
Sbjct: 990559 aggctgaaaagaaggataggatccgcaaaagtaagcttgaccaaggtgcggctaaggtgg 990500

                              
Query: 255    ccaaagagcttcagaa 270
              |  |||||||||||||
Sbjct: 990499 ctgaagagcttcagaa 990484
to top
>gb|AY627765.1| Zea mays U1 snRNP gene, complete cds; alternatively spliced
          Length = 5550

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Plus

                                                                        
Query: 410  gtaactgacaaggatacgaataaacctagaggatatgcattcatagagtatatgcatact 469
            |||||||| || ||||| | |||||||||||||||||||||||| |||||| |||| || 
Sbjct: 3329 gtaactgagaaagataccagtaaacctagaggatatgcattcattgagtatgtgcacaca 3388

                         
Query: 470  cgggatatgaaaa 482
            || || |||||||
Sbjct: 3389 cgagacatgaaaa 3401



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                        
Query: 500  gatgggagaaaagtagacaataagagggtactagttgatgtggaacgtggtagaactgtt 559
            |||||||||||||| ||||| | ||||||| |||||||||| || || || |||||||||
Sbjct: 3510 gatgggagaaaagtggacaacaggagggtattagttgatgttgagcgaggcagaactgtt 3569

                    
Query: 560  cctaattg 567
            || |||||
Sbjct: 3570 ccaaattg 3577



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 276  acccacaaagtgatcccaataccacttcagatccgtacaaaacactcttcgttgcaagac 335
            ||||||||||||| |||||| | |||  |||||| |||||||||||||| ||||| ||||
Sbjct: 1260 acccacaaagtgaccccaatgctactggagatccatacaaaacactctttgttgctagac 1319

              
Query: 336  tt 337
            ||
Sbjct: 1320 tt 1321



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 92/113 (81%)
 Strand = Plus / Plus

                                                                       
Query: 2   atggggcagggccaccctacgggcctcacgccgaacctgctcaagctgttcgaggcgcgg 61
           |||||||||  |||||| ||||| |||||||| |||||||| ||||| |||||  |||| 
Sbjct: 275 atggggcagatccacccgacggggctcacgcccaacctgcttaagctcttcgaaccgcgt 334

                                                                
Query: 62  cctatgctcgagcacaagccgcccgtccagaagcgcaagntgccggcctacac 114
           ||   ||||||| ||||||| ||  |  ||||||||||  |||||||||||||
Sbjct: 335 ccaccgctcgagtacaagcccccgctggagaagcgcaaattgccggcctacac 387



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 371  gagtttgaagcctatgggcctattaaaagggta 403
            ||||||||||  ||||| |||||||||||||||
Sbjct: 1474 gagtttgaaggttatggtcctattaaaagggta 1506
to top
>ref|NM_180345.1| Arabidopsis thaliana U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding
            AT3G50670 (U1-70K) transcript variant AT3G50670.2 mRNA,
            complete cds
          Length = 2424

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                        
Query: 428  aataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaatgct 487
            |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  ||| 
Sbjct: 1519 aataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagctgca 1578

                             
Query: 488  tacaagcaagctgatgg 504
            || ||||||||||||||
Sbjct: 1579 tataagcaagctgatgg 1595



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                       
Query: 304 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 363
           |||||| ||||| ||| | |||||| |||||||||| |||||  | || ||||||| | |
Sbjct: 486 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 545

                                                   
Query: 364 taagcgggagtttgaagcctatgggcctattaaaagggta 403
           |||  ||||||||||| | ||||| || |||||| |||||
Sbjct: 546 taaaagggagtttgaatcttatggaccaattaaacgggta 585
to top
>ref|NM_114927.2| Arabidopsis thaliana U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding
           / nucleic acid binding AT3G50670 (U1-70K) transcript
           variant AT3G50670.1 mRNA, complete cds
          Length = 1555

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 157/201 (78%)
 Strand = Plus / Plus

                                                                       
Query: 304 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 363
           |||||| ||||| ||| | |||||| |||||||||| |||||  | || ||||||| | |
Sbjct: 497 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 556

                                                                       
Query: 364 taagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaagga 423
           |||  ||||||||||| | ||||| || |||||| |||| |   | || |||||  ||  
Sbjct: 557 taaaagggagtttgaatcttatggaccaattaaacgggttcatttggtgactgatcagct 616

                                                                       
Query: 424 tacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaa 483
            || |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  
Sbjct: 617 gaccaataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagc 676

                                
Query: 484 tgcttacaagcaagctgatgg 504
           ||| || ||||||||||||||
Sbjct: 677 tgcatataagcaagctgatgg 697
to top
>gb|AY094003.1| Arabidopsis thaliana AT3g50670/T3A5_50 mRNA, complete cds
          Length = 1284

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 157/201 (78%)
 Strand = Plus / Plus

                                                                       
Query: 304 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 363
           |||||| ||||| ||| | |||||| |||||||||| |||||  | || ||||||| | |
Sbjct: 402 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 461

                                                                       
Query: 364 taagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaagga 423
           |||  ||||||||||| | ||||| || |||||| |||| |   | || |||||  ||  
Sbjct: 462 taaaagggagtttgaatcttatggaccaattaaacgggttcatttggtgactgatcagct 521

                                                                       
Query: 424 tacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaa 483
            || |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  
Sbjct: 522 gaccaataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagc 581

                                
Query: 484 tgcttacaagcaagctgatgg 504
           ||| || ||||||||||||||
Sbjct: 582 tgcatataagcaagctgatgg 602
to top
>gb|AY039874.1| Arabidopsis thaliana AT3g50670/T3A5_50 mRNA, complete cds
          Length = 1483

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 157/201 (78%)
 Strand = Plus / Plus

                                                                       
Query: 304 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 363
           |||||| ||||| ||| | |||||| |||||||||| |||||  | || ||||||| | |
Sbjct: 459 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 518

                                                                       
Query: 364 taagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaagga 423
           |||  ||||||||||| | ||||| || |||||| |||| |   | || |||||  ||  
Sbjct: 519 taaaagggagtttgaatcttatggaccaattaaacgggttcatttggtgactgatcagct 578

                                                                       
Query: 424 tacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaa 483
            || |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  
Sbjct: 579 gaccaataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagc 638

                                
Query: 484 tgcttacaagcaagctgatgg 504
           ||| || ||||||||||||||
Sbjct: 639 tgcatataagcaagctgatgg 659
to top
>emb|BX823870.1|CNS0A6KL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS87ZC08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1391

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                       
Query: 428 aataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaatgct 487
           |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  ||| 
Sbjct: 553 aataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagctgca 612

                            
Query: 488 tacaagcaagctgatgg 504
           || ||||||||||||||
Sbjct: 613 tataagcaagctgatgg 629
to top
>gb|U52910.1|ATU52910 Arabidopsis thaliana U1 snRNP 70K truncated protein mRNA, long
            alternatively spliced transcript, complete cds
          Length = 2425

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 64/77 (83%)
 Strand = Plus / Plus

                                                                        
Query: 428  aataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaatgct 487
            |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  ||| 
Sbjct: 1520 aataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagctgca 1579

                             
Query: 488  tacaagcaagctgatgg 504
            || ||||||||||||||
Sbjct: 1580 tataagcaagctgatgg 1596



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 81/100 (81%)
 Strand = Plus / Plus

                                                                       
Query: 304 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 363
           |||||| ||||| ||| | |||||| |||||||||| |||||  | || ||||||| | |
Sbjct: 486 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 545

                                                   
Query: 364 taagcgggagtttgaagcctatgggcctattaaaagggta 403
           |||  ||||||||||| | ||||| || |||||| |||||
Sbjct: 546 taaaagggagtttgaatcttatggaccaattaaacgggta 585
to top
>gb|M93439.1|ATHRNU1 Arabidopsis thaliana 70kDa small nuclear ribonucleoprotein U1
           (RNU1) mRNA, partial cds
          Length = 1465

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 157/201 (78%)
 Strand = Plus / Plus

                                                                       
Query: 304 agatccgtacaaaacactcttcgttgcaagacttaattacgagacatctgagagtagggt 363
           |||||| ||||| ||| | |||||| |||||||||| |||||  | || ||||||| | |
Sbjct: 425 agatccatacaagacattgttcgtttcaagacttaactacgaatcctcagagagtaagat 484

                                                                       
Query: 364 taagcgggagtttgaagcctatgggcctattaaaagggtacggctcgtaactgacaagga 423
           |||  ||||||||||| | ||||| || |||||| |||| |   | || |||||  ||  
Sbjct: 485 taaaagggagtttgaatcttatggaccaattaaacgggttcatttggtgactgatcagct 544

                                                                       
Query: 424 tacgaataaacctagaggatatgcattcatagagtatatgcatactcgggatatgaaaaa 483
            || |||||||| | ||||||||| ||||| ||||| ||||| || || || ||||||  
Sbjct: 545 gaccaataaacccaaaggatatgctttcattgagtacatgcacacccgtgacatgaaagc 604

                                
Query: 484 tgcttacaagcaagctgatgg 504
           ||| || ||||||||||||||
Sbjct: 605 tgcatataagcaagctgatgg 625
to top
>ref|XM_633170.1| Dictyostelium discoideum hypothetical protein (DDB0218709), partial
            mRNA
          Length = 3108

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 439  aggatatgcattcatagagtat 460
            ||||||||||||||||||||||
Sbjct: 1884 aggatatgcattcatagagtat 1905
to top
>emb|AL359738.7| Human DNA sequence from clone RP11-249D14 on chromosome 1 Contains part
             of a gene for a novel protein and 3' end of a novel gene,
             complete sequence
          Length = 77555

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 5     gggcagggccaccctacgggcc 26
             ||||||||||||||||||||||
Sbjct: 29062 gggcagggccaccctacgggcc 29041
to top
>gb|AC147964.10| Medicago truncatula clone mth2-5i18, complete sequence
          Length = 134939

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 523   gagggtactagttgatgtggaacgtggtagaactgttcctaattg 567
             |||||| || || ||||| |||||||| ||||||||||| |||||
Sbjct: 40161 gagggtgcttgtggatgttgaacgtgggagaactgttccaaattg 40205
to top
>gb|AC148484.17| Medicago truncatula clone mth2-46g10, complete sequence
          Length = 130381

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                          
Query: 523   gagggtactagttgatgtggaacgtggtagaactgttcctaattg 567
             |||||| || || ||||| |||||||| ||||||||||| |||||
Sbjct: 24152 gagggtgcttgtggatgttgaacgtgggagaactgttccaaattg 24108
to top
>emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, complete sequence
          Length = 250701

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 442    atatgcattcatagagtatatgca 465
              ||||||||||||| ||||||||||
Sbjct: 129497 atatgcattcataaagtatatgca 129520
to top
>gb|AC024946.13| Homo sapiens chromosome 10 clone RP11-138M8, complete sequence
          Length = 155580

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 506    agaaaagtagacaataagag 525
              ||||||||||||||||||||
Sbjct: 121246 agaaaagtagacaataagag 121265
to top
>gb|AC024597.8| Homo sapiens chromosome 10 clone RP11-120C12, complete sequence
          Length = 155580

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   agaaaagtagacaataagag 525
             ||||||||||||||||||||
Sbjct: 34335 agaaaagtagacaataagag 34316
to top
>gb|AC024598.7| Homo sapiens chromosome 10 clone RP11-13A2, complete sequence
          Length = 174734

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    agaaaagtagacaataagag 525
              ||||||||||||||||||||
Sbjct: 169483 agaaaagtagacaataagag 169464
to top
>emb|AL356032.4|CNS05TDD Human chromosome 14 DNA sequence BAC R-802A16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169936

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 442   atatgcattcatagagtata 461
             ||||||||||||||||||||
Sbjct: 25156 atatgcattcatagagtata 25137
to top
>emb|AL355072.3|CNS05TC6 Human chromosome 14 DNA sequence BAC R-135B15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168065

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 442    atatgcattcatagagtata 461
              ||||||||||||||||||||
Sbjct: 162283 atatgcattcatagagtata 162264


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,381,124
Number of Sequences: 3902068
Number of extensions: 3381124
Number of successful extensions: 78086
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77963
Number of HSP's gapped (non-prelim): 114
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top