ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd19f18 |
|---|---|
| Clone Library Name | barley_pub |
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 71.2 bits (173), Expect = 2e-12 Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 2/80 (2%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAAL 545 D R++YVGN+ +VTE L++++F GP + CK+I + S+ + FV++Y+ R AA Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAA 63 Query: 546 AIMTLHGRHIYGQAIKVNWA 605 A+ ++GR I G+ +KVNWA Sbjct: 64 ALAAMNGRKILGKEVKVNWA 83 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSA 539 D S V+VG++ P +T + F G + ++++ + +GFV +Y++ A Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 AI+ + G+ + G+ I+ NWA Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWA 173
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 65.9 bits (159), Expect = 9e-11 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 19/97 (19%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI------RKEKSSFGF------- 512 D R++YVGN+ +VTE L++++F GP + CK+I R+ SS GF Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 513 ------VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V++Y+ R AA A+ ++GR I G+ +KVNWA Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSA 539 D S V+VG++ P +T + F G + ++++ + +GFV +Y++ A Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 AI+ + G+ + G+ I+ NWA Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWA 190
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 2/75 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAIMTL 560 +++YVGN+ +VTE L++++F GP + CK+I + + FV++++ R AA A+ + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 561 HGRHIYGQAIKVNWA 605 +GR I G+ +KVNWA Sbjct: 67 NGRKIMGKEVKVNWA 81 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMTL 560 V+VG++ P +T + F G + ++++ + +GFV ++++ A AI + Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 561 HGRHIYGQAIKVNWA 605 G+ + G+ I+ NWA Sbjct: 168 GGQWLGGRQIRTNWA 182
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 65.5 bits (158), Expect = 1e-10 Identities = 29/75 (38%), Positives = 51/75 (68%), Gaps = 2/75 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAIMTL 560 +++YVGN+ +VTE L++++F GP + CK+I + + FV++++ R AA A+ + Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 561 HGRHIYGQAIKVNWA 605 +GR I G+ +KVNWA Sbjct: 67 NGRKIMGKEVKVNWA 81 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMTL 560 V+VG++ P +T + F G + ++++ + +GFV ++++ A AI + Sbjct: 108 VFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167 Query: 561 HGRHIYGQAIKVNWA 605 G+ + G+ I+ NWA Sbjct: 168 GGQWLGGRQIRTNWA 182
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 61.6 bits (148), Expect = 2e-09 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI---RKEKSSFGFVDYYDRRSAALAIMT 557 R +YVGN+ +TE++L + FQ GP+ K++ + ++ FV+Y+ A +A+ T Sbjct: 74 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQT 133 Query: 558 LHGRHIYGQAIKVNWAF 608 L+G+ I +K+NWAF Sbjct: 134 LNGKQIENNIVKINWAF 150 Score = 32.3 bits (72), Expect = 1.1 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQG-----SGPVERCKLIRKEKSSFGFVDYYDRRSAALAIM 554 +++VG+++ NV + L F+ SG V + +GFV + + A A+ Sbjct: 162 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHV-MWDMQTGSSRGYGFVSFTSQDDAQNAMD 220 Query: 555 TLHGRHIYGQAIKVNWA 605 ++ G+ + G+ +++NWA Sbjct: 221 SMQGQDLNGRPLRINWA 237 Score = 30.4 bits (67), Expect = 4.2 Identities = 20/76 (26%), Positives = 32/76 (42%) Frame = +3 Query: 375 PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIM 554 P + Y+GN+ TE LI +FQ G + K + F+ Y AA+ I+ Sbjct: 336 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFK--HYPEKGCCFIKYDTHEQAAVCIV 393 Query: 555 TLHGRHIYGQAIKVNW 602 L G+ ++ W Sbjct: 394 ALANFPFQGRNLRTGW 409
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 53.1 bits (126), Expect = 6e-07 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVER---CKLIRKEKSSFGFVDYYDRRSAALAIMT 557 R+V+VGN+ V E +L E+F +GP+ + CK + SFGFV + S + AI Sbjct: 10 RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIAL 69 Query: 558 LHGRHIYGQAIKVNWAF 608 L+G +YG+ I V + F Sbjct: 70 LNGIRLYGRPINVQYRF 86
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDR 530 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 531 RSAALAIMTLHGRHIYGQAIKVN 599 +A A+ L+GR G+A++V+ Sbjct: 68 ETALSAMRNLNGREFSGRALRVD 90
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDR 530 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 531 RSAALAIMTLHGRHIYGQAIKVN 599 +A A+ L+GR G+A++V+ Sbjct: 68 ETALSAMRNLNGREFSGRALRVD 90
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDR 530 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 531 RSAALAIMTLHGRHIYGQAIKVN 599 +A A+ L+GR G+A++V+ Sbjct: 68 ETALSAMRNLNGREFSGRALRVD 90
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 4/83 (4%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDR 530 P D S RSV+VGN+ TE L ++F GPV +L+ ++ +GF +Y D+ Sbjct: 9 PAVDRSL-RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 531 RSAALAIMTLHGRHIYGQAIKVN 599 +A A+ L+GR G+A++V+ Sbjct: 68 ETALSAMRNLNGREFSGRALRVD 90
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 50.4 bits (119), Expect = 4e-06 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK----SSFGFVDYYDRRSAALAIM 554 R+++VGN+ VTE LL E+F +GPV + K I K+K F FV++ S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKPKQFAFVNFKHEVSVPYAMN 68 Query: 555 TLHGRHIYGQAIKVNW 602 L+G +YG+ IK+ + Sbjct: 69 LLNGIKLYGRPIKIQF 84
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +3 Query: 339 PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSF 506 PV +GN D T ++ V + N+T+ L +F G +E CKL+R + + Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 507 GFVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 GFV+Y D + A AI TL+G + + IKV++A Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +3 Query: 339 PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSF 506 PV +GN D T ++ V + N+T+ L +F G +E CKL+R + + Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 507 GFVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 GFV+Y D + A AI TL+G + + IKV++A Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 49.3 bits (116), Expect = 9e-06 Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 4/93 (4%) Frame = +3 Query: 339 PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSF 506 PV +GN D T ++ V + N+T+ L +F G +E CKL+R + + Sbjct: 28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82 Query: 507 GFVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 GFV+Y D + A AI TL+G + + IKV++A Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK----SSFGFVDYYDRRSAALAIM 554 R+++VGN+ VTE LL E+F +GPV + K I K+K F FV++ S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKPKQFAFVNFKHEVSVPYAMN 68 Query: 555 TLHGRHIYGQAIKVNW 602 L+G ++G+ IK+ + Sbjct: 69 LLNGIKLFGRPIKIQF 84
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK----SSFGFVDYYDRRSAALAIM 554 R+++VGN+ VTE LL E+F +GPV + K I K+K F FV++ S A+ Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVK-IPKDKDGKLKQFAFVNFKHEVSVPYAMN 68 Query: 555 TLHGRHIYGQAIKVNW 602 L+G ++G+ IK+ + Sbjct: 69 LLNGIKLFGRPIKIQF 84
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 542 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A++ LHG+ I G+ + V A Sbjct: 254 KAVLDLHGKSIDGKVLYVGRA 274 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ ++ W+ Sbjct: 79 MNFDLINGKPFRLMWS 94
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 542 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A++ LHG+ I G+ + V A Sbjct: 254 KAVLDLHGKSIDGKVLYVGRA 274 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ ++ W+ Sbjct: 79 MNFDLINGKPFRLMWS 94
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 542 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A++ LHG+ I G+ + V A Sbjct: 254 KAVLDLHGKSIDGKVLYVGRA 274 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ ++ W+ Sbjct: 79 MNFDLINGKPFRLMWS 94
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 542 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A++ LHG+ I G+ + V A Sbjct: 254 KAVLDLHGKSIDGKVLYVGRA 274 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ ++ W+ Sbjct: 79 MNFDLINGKPFRLMWS 94
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 542 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A++ LHG+ I G+ + V A Sbjct: 254 KAVLDLHGKSIDGKVLYVGRA 274 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ ++ W+ Sbjct: 79 MNFDLINGKPFRLMWS 94
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 48.9 bits (115), Expect = 1e-05 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAA 542 D +T +V+V N+ ++ + L E+F GP E K+IR + FGFV Y +A Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A++ LHG+ I G+ + V A Sbjct: 254 KAVLDLHGKSIDGKVLYVGRA 274 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/76 (26%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 ++YVG++ P+VTE++L + F+ +GP+ ++ R + +G+V++ A A+ T Sbjct: 19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNT 78 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ ++ W+ Sbjct: 79 MNFDLINGKPFRLMWS 94
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ + LI S++ +V++ + A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGKPVRIMWS 87
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 48.5 bits (114), Expect = 2e-05 Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 S+Y+G++HP+VTE +L E F +GP+ ++ R + S+ ++++ A A+ T Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ I++ W+ Sbjct: 72 MNFEVIKGRPIRIMWS 87 Score = 38.1 bits (87), Expect = 0.020 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRS 536 PG S +V++ N+ ++ L + F G + CK++ E S +GFV + + Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEA 150 Query: 537 AALAIMTLHG 566 A AI T++G Sbjct: 151 ANRAIQTMNG 160 Score = 35.4 bits (80), Expect = 0.13 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 560 +VY+ N ++ + L E+F G K++ + FGFV+Y + A A+ + Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 561 HGRHIYGQAIKVNWA 605 +G+ + G+ I V A Sbjct: 252 NGKEVNGRMIYVGRA 266
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDR 530 P D S RSV+VGN+ TE L ++F G V +L+ ++ +GF +Y D+ Sbjct: 9 PAMDRSL-RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 531 RSAALAIMTLHGRHIYGQAIKVN 599 +A A+ L+GR G+A++V+ Sbjct: 68 ETALSAMRNLNGREFSGRALRVD 90
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 48.5 bits (114), Expect = 2e-05 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 4/83 (4%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDR 530 P D S RSV+VGN+ TE L ++F G V +L+ ++ +GF +Y D+ Sbjct: 9 PAMDRSL-RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQ 67 Query: 531 RSAALAIMTLHGRHIYGQAIKVN 599 +A A+ L+GR G+A++V+ Sbjct: 68 ETALSAMRNLNGREFSGRALRVD 90
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Frame = +3 Query: 339 PVSNGNLPPGFDPSTCRSVYVGNVHP-NVTENLLIEVFQGSGPVERCKLIRK----EKSS 503 PV +GN ++ + N P N+T+ L +F G +E CKL+R + Sbjct: 28 PVDSGNTEDS------KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81 Query: 504 FGFVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 +GFV+Y D + A AI TL+G + + IKV++A Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 115
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ ++ R + + ++++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ I++ W+ Sbjct: 72 MNFEVIKGRPIRIMWS 87 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRS 536 PG S +V++ N+ ++ L + F G + CK++ E S +GFV + + + Sbjct: 91 PGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEA 150 Query: 537 AALAIMTLHG 566 A AI T++G Sbjct: 151 ANRAIQTMNG 160 Score = 35.0 bits (79), Expect = 0.17 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 560 +VY+ N ++ + L E+F G K++ + FGFV+Y + A A+ + Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 561 HGRHIYGQAIKVNWA 605 +G+ + G+ I V A Sbjct: 252 NGKEVNGRMIYVGRA 266
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 S+Y+G++HP+VTE +L E F +GP+ ++ R + + ++++ A A+ T Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ I++ W+ Sbjct: 72 MNFEVIKGRPIRIMWS 87 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRS 536 PG S +V++ N+ ++ L + F G + CK++ E S +GFV + + + Sbjct: 91 PGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEA 150 Query: 537 AALAIMTLHG 566 A AI T++G Sbjct: 151 ANRAIQTMNG 160 Score = 34.3 bits (77), Expect = 0.29 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 560 +VY+ N ++ + L E+F G K++ FGFV+Y + A A+ + Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 561 HGRHIYGQAIKVNWA 605 +G+ + G+ + V A Sbjct: 252 NGKEVNGRMVYVGRA 266
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGKPVRIMWS 87 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMTL 560 +VY+ N ++ + L E+F GP K++ E FGFV + A A+ + Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 561 HGRHIYGQAIKVNWA 605 +G+ + G+ I V A Sbjct: 252 NGKELNGKQIYVGRA 266
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGKPVRIMWS 87 Score = 33.9 bits (76), Expect = 0.38 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMTL 560 +VY+ N ++ + L E+F GP K++ E FGFV + A A+ + Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 561 HGRHIYGQAIKVNWA 605 +G+ + G+ I V A Sbjct: 252 NGKELNGKQIYVGRA 266
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGKPVRIMWS 87
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGKPVRIMWS 87
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 46.2 bits (108), Expect = 7e-05 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGKPVRIMWS 87
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V + N+T+ +F G +E CKL+R + +GFV+Y D + A AI T Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 112 LNGLRLQTKTIKVSYA 127
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V + N+T+ +F G +E CKL+R + +GFV+Y D + A AI T Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 100 LNGLRLQTKTIKVSYA 115
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 45.8 bits (107), Expect = 1e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V + N+T+ +F G +E CKL+R + +GFV+Y D + A AI T Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 107 LNGLRLQTKTIKVSYA 122
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 ++YVGN+ TE + E+F SG V+R + ++K F FV+YY R A A+ Sbjct: 33 TLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAGTAMRF 92 Query: 558 LHGRHIYGQAIKVNW 602 ++G + + ++ +W Sbjct: 93 INGTRLDDRIVRTDW 107
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 45.1 bits (105), Expect = 2e-04 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = +3 Query: 360 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYD 527 P G P T S+YVG + P+VTE +L E+F GPV ++ R + + +V++++ Sbjct: 72 PSGTAP-TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHN 130 Query: 528 RRSAALAIMTLHGRHIYGQAIKVNWA 605 A+ L+ I G+ ++ W+ Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWS 156 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS---FGFVDYYDRRSAALAIMTL 560 +VY+ N+ +TE ++F G + L++ + FGFV+Y + A A+ L Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321 Query: 561 HGRHIYGQAIKVNWA 605 + + G+ + V A Sbjct: 322 NDKEYKGKKLYVGRA 336
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMT 557 S+YVG++HP+VTE +L + F + +L + S +G+ ++ R+ A LAI Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84 Query: 558 LHGRHIYGQAIKVNWA 605 + + G+ I+V W+ Sbjct: 85 KNNSLLNGKMIRVMWS 100 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK---SSFGFVDYYDRRSAALAIMTL 560 ++YV NV+ VTE L + F G + KL+ EK FGFV + A A+ T Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 561 HGRHIYGQAIKV 596 HG+ +G+ + V Sbjct: 365 HGQMFHGKPLYV 376
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 +VYVG + V+E LL E+F +GPV + + + +GFV++ A AI Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73 Query: 558 LHGRHIYGQAIKVNWAFA 611 ++ +YG+ I+VN A A Sbjct: 74 MNMIKLYGKPIRVNKASA 91
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 ++YVG + V+E++L E+ +GPV + + FGFV++ A AI Sbjct: 14 TIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKI 73 Query: 558 LHGRHIYGQAIKVNWAFA 611 L+ +YG+ IKVN A A Sbjct: 74 LNMIKLYGKPIKVNKASA 91 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 5/78 (6%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-----FGFVDYYDRRSAALAIM 554 +++VGN+ P V E LL + F G + + I ++ S F F+++ ++ A+ Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160 Query: 555 TLHGRHIYGQAIKVNWAF 608 ++G+ + +AI V++AF Sbjct: 161 AMNGQFLCNRAITVSYAF 178
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V + N+T++ +F G +E CKL+R + +GFV+Y D A AI T Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 100 LNGLKLQTKTIKVSYA 115
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V + N+T++ +F G +E CKL+R + +GFV+Y D A AI T Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 100 LNGLKLQTKTIKVSYA 115
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMT 557 ++ V + N+T+ L +F G VE KLIR + + +GFV+Y + A AI T Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 81 LNGLRLQSKTIKVSYA 96
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 44.3 bits (103), Expect = 3e-04 Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMT 557 ++ V + N+T++ L +F G VE KLIR + + +GFV+Y + A AI T Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 81 LNGLRLQSKTIKVSYA 96
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 +YVG++H N+TE++L +F+ G +E +L+ ++ +GF+ + D A A+ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 561 HGRHIYGQAIKV 596 +G + G+ +KV Sbjct: 312 NGFELAGRPMKV 323
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 +YVG++H N+TE++L +F+ G +E +L+ ++ +GF+ + D A A+ L Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query: 561 HGRHIYGQAIKV 596 +G + G+ +KV Sbjct: 312 NGFELAGRPMKV 323
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 +Y+GN++ +TE ++ VF G L R E + F ++ Y D+RS LA+ L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 561 HGRHIYGQAIKVNWAF 608 +G I G+A+K++ F Sbjct: 93 NGFKIGGRALKIDHTF 108
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 43.9 bits (102), Expect = 4e-04 Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 V+VGN+ +V+E + E+F GPV+ KL+ ++ +GF +++D + A+A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 561 HGRHIYGQAIKVNW 602 + + + I+V + Sbjct: 69 NNSELGPRKIRVEF 82
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 43.9 bits (102), Expect = 4e-04 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++H +VTE +L E F +GPV + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ I++ W+ Sbjct: 72 MNFDVIKGKPIRIMWS 87
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 43.5 bits (101), Expect = 5e-04 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 4/72 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMTL 560 +YV ++HP+++E + VF+ GP+ CKL + +GF++Y ++++ AI ++ Sbjct: 229 IYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASM 288 Query: 561 HGRHIYGQAIKV 596 + + GQ ++V Sbjct: 289 NLFDLGGQLLRV 300 Score = 35.4 bits (80), Expect = 0.13 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAI 551 CR VYVG++ + E+ + F GP++ + I ++ F FV+Y A LA+ Sbjct: 130 CR-VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLAL 188 Query: 552 MTLHGRHIYGQAIKV 596 ++G + G+ IKV Sbjct: 189 EQMNGALMGGRNIKV 203
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 43.1 bits (100), Expect = 6e-04 Identities = 21/76 (27%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++H +VTE +L E F +GP+ + +I + + +V++ A A+ T Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 558 LHGRHIYGQAIKVNWA 605 ++ I G+ +++ W+ Sbjct: 72 MNFDVIKGRPVRIMWS 87
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 ++YVGN+ TE + E+F SG +++ + ++K F FV+YY R A A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 558 LHGRHIYGQAIKVNW 602 ++G + + I+ +W Sbjct: 101 INGTRLDDRIIRTDW 115
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 ++YVGN+ TE + E+F SG +++ + ++K F FV+YY R A A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 558 LHGRHIYGQAIKVNW 602 ++G + + I+ +W Sbjct: 101 INGTRLDDRIIRTDW 115
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 43.1 bits (100), Expect = 6e-04 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 ++YVGN+ TE + E+F SG +++ + ++K F FV+YY R A A+ Sbjct: 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 100 Query: 558 LHGRHIYGQAIKVNW 602 ++G + + I+ +W Sbjct: 101 INGTRLDDRIIRTDW 115
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 42.7 bits (99), Expect = 8e-04 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMTL 560 VY+GN+ VT LL + F G V K+ R + + FGFV + AI L Sbjct: 186 VYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQAL 245 Query: 561 HGRHIYGQAIKVNWA 605 + + GQ I+VN A Sbjct: 246 NNSVLEGQKIRVNKA 260 Score = 35.4 bits (80), Expect = 0.13 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%) Frame = +3 Query: 336 EPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS---- 503 E S+ D R +YVGN+ N+ + L + + G +E +++ + S Sbjct: 67 ETSSSSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRR 126 Query: 504 FGFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 FGFV A I L+ I G+ IKVN Sbjct: 127 FGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 42.4 bits (98), Expect = 0.001 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 ++Y+GN+ VT+++L E+ +GPV + +R + FGF ++ + A Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71 Query: 558 LHGRHIYGQAIKVNWA 605 L+ ++G+ I+VN A Sbjct: 72 LNQVKLFGKPIRVNRA 87 Score = 39.7 bits (91), Expect = 0.007 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMT 557 +++VGN+ P V E +L + F G + + + ++++ +GFV Y +A AI Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159 Query: 558 LHGRHIYGQAIKVNWAF 608 ++ + + + I V++AF Sbjct: 160 MNNQFLMNKPITVSYAF 176
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMTL 560 +YVG++H N+TE++L +F+ G ++ L++ +GF+ + D A A+ L Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 561 HGRHIYGQAIKV 596 +G + G+ ++V Sbjct: 325 NGFELAGRPMRV 336
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMT 557 +VYVGN+ P +T+ L E+F PV R K + + + F+++Y++ A AI Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69 Query: 558 LHGR-HIYGQAIKV 596 ++ +Y + IKV Sbjct: 70 MNNTVRLYDRLIKV 83
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 399 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTLHG 566 V N+ P++T+ E+ + G +ERC L+ E++ +GF +Y + SAA A L G Sbjct: 136 VANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLG 195 Query: 567 RHIYGQAIKVNWAFA 611 + + + + V+W A Sbjct: 196 KPLGPRTLYVHWTDA 210
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCK----LIRKEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++ NVT++ L + F G V + L+ + +G+V++ + + AA AI Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96 Query: 558 LHGRHIYGQAIKVNWA 605 L+ +YG+ I+V ++ Sbjct: 97 LNYIPLYGKPIRVMYS 112 Score = 34.7 bits (78), Expect = 0.23 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = +3 Query: 354 NLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS---FGFVDYY 524 NL D ++YV N+ P++++ L E+F G V K++R + GFV + Sbjct: 307 NLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFA 366 Query: 525 DRRSAALAIMTLHGRHIYGQAIKV 596 A A+ L G+ I + + V Sbjct: 367 TPEEATEAMSQLSGKMIESKPLYV 390
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 ++VG + +TE +I VF G + L+R +K+ F F+ Y D+RS LA+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 561 HGRHIYGQAIKVN 599 +G I G+ I+V+ Sbjct: 98 NGIKIKGRTIRVD 110
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/71 (28%), Positives = 41/71 (57%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +Y+G + V+E + F+G G + L K+ FGFV++ D+R A A+ L+G+ Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLL----KNGFGFVEFDDKRDAEDAVHDLNGKE 60 Query: 573 IYGQAIKVNWA 605 + G+ + ++++ Sbjct: 61 LGGERVILDYS 71
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVF-QGSGPVERCKLIRKE----KSSFG 509 SN +L + C S++VG++ PNVTE+ L E+F K++ + +G Sbjct: 150 SNNSLNNVKSGNNC-SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYG 208 Query: 510 FVDYYDRRSAALAIMTLHGRHIYGQAIKV 596 FV + + LA+ + G + G+AIKV Sbjct: 209 FVKFTNSDEQQLALSEMQGVFLNGRAIKV 237 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/77 (32%), Positives = 38/77 (49%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAI 551 DP+ +V++G + VTE+ L FQ G + K+ GFV Y DR SA AI Sbjct: 309 DPNNT-TVFIGGLSSLVTEDELRAYFQPFGTIVYVKI--PVGKCCGFVQYVDRLSAEAAI 365 Query: 552 MTLHGRHIYGQAIKVNW 602 + G I ++++W Sbjct: 366 AGMQGFPIANSRVRLSW 382
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 399 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTLHG 566 V N+ P++T+ E+ + G +ERC L+ E++ +GF +Y + SAA A L G Sbjct: 136 VANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLG 195 Query: 567 RHIYGQAIKVNWAFA 611 + + + + V+W A Sbjct: 196 KPLGPRTLYVHWTDA 210
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 40.4 bits (93), Expect = 0.004 Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 399 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTLHG 566 V N+ P++T+ E+ + G +ERC L+ E++ +GF +Y + SAA A L G Sbjct: 136 VANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLG 195 Query: 567 RHIYGQAIKVNWAFA 611 + + + + V+W A Sbjct: 196 KPLGPRTLYVHWTDA 210
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/68 (30%), Positives = 34/68 (50%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ PN T + +F G + C +++ +FGFV + A AI LH Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIVK----NFGFVHMDSKSEADEAIQNLHHYM 59 Query: 573 IYGQAIKV 596 + G A+ V Sbjct: 60 LNGMAMNV 67 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/74 (27%), Positives = 31/74 (41%) Frame = +3 Query: 375 PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIM 554 P T ++VGN+ + T L F+ GPV C +++ + FV A AI Sbjct: 74 PKTSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVK----DYAFVHMERVEDAMEAIS 129 Query: 555 TLHGRHIYGQAIKV 596 L G+ + V Sbjct: 130 GLDNTAFQGKLMSV 143
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/68 (30%), Positives = 34/68 (50%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VG + P T +++ F+G G + CKL+ + FGFV+ D R A + G+ Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM----NGFGFVEVEDARDARDIVNDFQGKE 61 Query: 573 IYGQAIKV 596 G I V Sbjct: 62 FMGSRIVV 69
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Frame = +3 Query: 372 DPSTCRSVYVGNVHP-NVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRS 536 DP + + N P ++T+ L +F+ GP+ C+++R K+ SFG FVD+ Sbjct: 119 DPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 178 Query: 537 AALAIMTLHGRHIYGQAIKVNWA 605 + AI L+G + + +KV++A Sbjct: 179 SQRAIKVLNGITVRNKRLKVSYA 201
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 39.7 bits (91), Expect = 0.007 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSS--FGFVDYYDRRSAALAIMT 557 R++YV + L F+ GP+ RC + I + ++S F FV+Y D R A A Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYE 66 Query: 558 LHGRHIY--GQAIKVNWA 605 +HGR + G ++V WA Sbjct: 67 VHGRRLERGGGVLRVEWA 84
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 39.7 bits (91), Expect = 0.007 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 R++YVG + VTE LL F G + ++ +S F F++Y AA AI Sbjct: 6 RTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAID 65 Query: 555 TLHGRHIYGQAIKVNWA 605 ++ + G+ I+VN A Sbjct: 66 NMNDSELCGRTIRVNLA 82
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 39.7 bits (91), Expect = 0.007 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +3 Query: 351 GNLPPGF---DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGF 512 G PPG+ P + VY+G + +V E+ LI +FQ G + +L+ F + Sbjct: 43 GGPPPGWVGSPPPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAY 102 Query: 513 VDYYDRRSAALAIMTLHGRHI 575 Y RR A AI TLH + Sbjct: 103 ARYSSRRGAQAAIATLHNHQL 123
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 39.7 bits (91), Expect = 0.007 Identities = 23/71 (32%), Positives = 37/71 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 VY+G + NV E + F G G + L K+ +GFV++ D R A A+ L+G+ Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDL----KNGYGFVEFEDSRDADDAVYELNGKE 59 Query: 573 IYGQAIKVNWA 605 + G+ + V A Sbjct: 60 LCGERVIVEHA 70
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS---FGFVDYYDRRSAALAIMTLH 563 +++G ++ E +L VF GP+ LI+ S F F+ + + A A ++ Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 564 GRHIYGQAIKVNWA 605 G+ ++G+AIKV A Sbjct: 70 GKSLHGKAIKVEQA 83
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-------FGFVDYYDRRSAALA 548 ++++ N++ + TE L EVF G V+ C + +K+ + FGFV+Y A A Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790 Query: 549 IMTLHGRHIYGQAIKV 596 + L G + G ++V Sbjct: 791 LKQLQGHVVDGHKLEV 806 Score = 36.2 bits (82), Expect = 0.077 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Frame = +3 Query: 381 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-----FGFVDYYDRRSAAL 545 T + V N+ + E+F G ++ +L +K + FGFVD+ ++ A Sbjct: 830 TTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKR 889 Query: 546 AIMTL-HGRHIYGQAIKVNWA 605 A L H H+YG+ + + WA Sbjct: 890 AFNALCHSTHLYGRRLVLEWA 910
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 39.3 bits (90), Expect = 0.009 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++ P+V+E L ++F G V ++ R K + +V++ D + AI Sbjct: 38 SLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQ 97 Query: 558 LHGRHIYGQAIKVNWA 605 L+ I G+ ++ W+ Sbjct: 98 LNYTPIKGRLCRIMWS 113 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAALAIMTL 560 ++YV N++ T+ E+F GP+ L + + FGFV+Y A A+ L Sbjct: 219 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 561 HGRHIYGQAIKVNWA 605 + + G+ + V A Sbjct: 279 NDSELNGEKLYVGRA 293
>COVA1_MOUSE (Q8R0Z2) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 598 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +3 Query: 348 NGNLPPGFD---PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF 506 N NLPP P C++V+VG + N TE +++EVF+ G + IRK K +F Sbjct: 83 NPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEI---IAIRKSKKNF 135
>COVA1_HUMAN (Q16206) Tumor-associated hydroquinone oxidase (tNOX) (Cytosolic| ovarian carcinoma antigen 1) (APK1 antigen) [Includes: Hydroquinone [NADH] oxidase (EC 1.-.-.-); Protein disulfide-thiol oxidoreductase (EC 1.-.-.-)] Length = 610 Score = 39.3 bits (90), Expect = 0.009 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%) Frame = +3 Query: 348 NGNLPPGFD---PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF 506 N NLPP P C++V+VG + N TE +++EVF+ G + IRK K +F Sbjct: 112 NPNLPPPATRERPPGCKTVFVGGLPENGTEQIIVEVFEQCGEI---IAIRKSKKNF 164
>DND1_XENLA (Q6DCB7) Dead end protein homolog 1| Length = 371 Score = 38.9 bits (89), Expect = 0.012 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Frame = +3 Query: 351 GNLPPGF---DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGF 512 G PPG+ P + V++G + ++ E+ LI +FQ G + +L+ F + Sbjct: 62 GGPPPGWIGNAPVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTFSGLNRGFAY 121 Query: 513 VDYYDRRSAALAIMTLHGRHI 575 Y RR A AIM+L+G I Sbjct: 122 ARYISRRQAISAIMSLNGFEI 142
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 38.9 bits (89), Expect = 0.012 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Frame = +3 Query: 369 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRS 536 F+PS CR VYVGN+ +V + L ++F G V +++ ++ FGFV Sbjct: 145 FEPS-CR-VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESE 202 Query: 537 AALAIMTLHGRHIYGQAIKVNWA 605 AI L G+ + G+A++VN A Sbjct: 203 VNDAIAALDGQTLDGRAVRVNVA 225
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 38.9 bits (89), Expect = 0.012 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 4/80 (5%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAAL 545 S+ ++ V + ++T+ L +F+ GP+ C+++R K+ SFG FVD+ + Sbjct: 124 SSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQR 183 Query: 546 AIMTLHGRHIYGQAIKVNWA 605 AI L+G + + +KV++A Sbjct: 184 AIKVLNGITVRNKRLKVSYA 203
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 38.5 bits (88), Expect = 0.016 Identities = 24/80 (30%), Positives = 40/80 (50%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 542 P F + +V+VG + V+E L +FQ G + K+ GFV + +R+SA Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI--PPGKGCGFVQFVNRQSAE 352 Query: 543 LAIMTLHGRHIYGQAIKVNW 602 +AI L G + I+++W Sbjct: 353 IAINQLQGYPLGNSRIRLSW 372 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 6/78 (7%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSSFGFVDYYDRRSAALAIMT 557 ++++G + P VTE + +V+ G + KLIR + + FV++ A+ A M+ Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MS 152 Query: 558 LHGRHIYG--QAIKVNWA 605 ++ + I G K+NWA Sbjct: 153 MNNKPIPGTNHLFKLNWA 170
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 38.5 bits (88), Expect = 0.016 Identities = 24/78 (30%), Positives = 39/78 (50%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMT 557 S CR V++G ++P E + F+G G + L K FGFV++ D R A A+ Sbjct: 2 SGCR-VFIGRLNPAAREKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYE 56 Query: 558 LHGRHIYGQAIKVNWAFA 611 L G+ + + + + A A Sbjct: 57 LDGKELCSERVTIEHARA 74
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 38.5 bits (88), Expect = 0.016 Identities = 24/78 (30%), Positives = 39/78 (50%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMT 557 S CR V++G ++P E + F+G G + L K FGFV++ D R A A+ Sbjct: 2 SGCR-VFIGRLNPAAREKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYE 56 Query: 558 LHGRHIYGQAIKVNWAFA 611 L G+ + + + + A A Sbjct: 57 LDGKELCSERVTIEHARA 74
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 38.5 bits (88), Expect = 0.016 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAAL 545 S S+++GN+ VTE +L ++F+ E K+ R K+ +G++++ D+ A Sbjct: 108 SKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAES 167 Query: 546 AIMTLHGRHIYGQAIKV 596 A + +GQ +K+ Sbjct: 168 ARKEFNYTVFFGQEVKI 184
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 38.5 bits (88), Expect = 0.016 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGF 512 S G G + VYVGN+ V + L E+F G V K++ S FGF Sbjct: 194 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 253 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V Y + AI +L+G + G++I+V+ A Sbjct: 254 VTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 ++VGN+ +V L +F+ +G VE ++I + S FGFV + A Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 561 HGRHIYGQAIKVN 599 +G I G+AI+VN Sbjct: 150 NGYEIDGRAIRVN 162
>WHI3_YEAST (P34761) Protein WHI3| Length = 661 Score = 38.5 bits (88), Expect = 0.016 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 11/84 (13%) Frame = +3 Query: 357 LPPGFDPST----CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFG----- 509 +PP +P+ C ++YVGN+ + TE L ++F G R K +S G Sbjct: 524 IPPPANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGP 583 Query: 510 --FVDYYDRRSAALAIMTLHGRHI 575 FV++ D A A+ L+GR + Sbjct: 584 MCFVEFDDVSFATRALAELYGRQL 607
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 38.5 bits (88), Expect = 0.016 Identities = 24/78 (30%), Positives = 39/78 (50%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMT 557 S CR V++G ++P E + F+G G + L K FGFV++ D R A A+ Sbjct: 2 SGCR-VFIGRLNPAAREKDVERFFKGYGRIRDIDL----KRGFGFVEFEDPRDADDAVYE 56 Query: 558 LHGRHIYGQAIKVNWAFA 611 L G+ + + + + A A Sbjct: 57 LDGKELCSERVTIEHARA 74
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 38.5 bits (88), Expect = 0.016 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGF 512 S G G + VYVGN+ V + L E+F G V K++ S FGF Sbjct: 193 SFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGF 252 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V Y + AI +L+G + G++I+V+ A Sbjct: 253 VTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283 Score = 33.1 bits (74), Expect = 0.66 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 ++VGN+ +V L +F+ +G VE ++I + + FGFV + A Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 561 HGRHIYGQAIKVN 599 +G I G+AI+VN Sbjct: 149 NGYEIDGRAIRVN 161
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 38.1 bits (87), Expect = 0.020 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF----GFVDYYDRRSAALAIMT 557 ++ V + ++ + L +F+ GP+ C+++R K+ + GFVD+ A AI Sbjct: 79 NLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINN 138 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + IKV++A Sbjct: 139 LNGITVRNKRIKVSFA 154
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 38.1 bits (87), Expect = 0.020 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = +3 Query: 369 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRS 536 FD S VYVGN+ V ++ L +F G V K++ S FGFV Y Sbjct: 190 FDSSN--RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 247 Query: 537 AALAIMTLHGRHIYGQAIKVNWAFA 611 AI +L G + G+AI+V+ A A Sbjct: 248 VNNAIESLDGVDLNGRAIRVSPAEA 272 Score = 34.3 bits (77), Expect = 0.29 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 ++VGN+ + L E+F+ +G VE ++I + + FGFV + A Sbjct: 89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 561 HGRHIYGQAIKVN 599 +G + G+A++VN Sbjct: 149 NGYELDGRALRVN 161
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 38.1 bits (87), Expect = 0.020 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAALAIMT 557 +++VG + +++ L +F GP+ KLI + E + +GF+ Y A+L I Sbjct: 196 NIFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKE 255 Query: 558 LHGRHIYGQAIKVNW 602 L+GR + G + +N+ Sbjct: 256 LNGRTVNGSTLFINY 270
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 38.1 bits (87), Expect = 0.020 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMT 557 S+YVGN+ +V+E L VF G V+R +L ++ FGFV+ AI Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 558 LHGRHIYGQAIKVNWA 605 L G G+ +KVN A Sbjct: 62 LDGAEWMGRDLKVNKA 77
>YP184_YEAST (Q08925) Putative RNA-binding protein YPL184C| Length = 612 Score = 38.1 bits (87), Expect = 0.020 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYY 524 + N P F + R+VY+GNV PN++ L++ + SG VE K+I ++ + FV + Sbjct: 187 AQANNPLNFTSAPSRTVYLGNVPPNLSVKELLDHVR-SGVVEDVKIIPEKMCA--FVSFI 243 Query: 525 DRRSAAL--AIMTLHGRHIYGQAIKVNW 602 D +A L + L +I + IK+ W Sbjct: 244 DESAALLFHSDAILKRLNIGDRDIKIGW 271
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 38.1 bits (87), Expect = 0.020 Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Frame = +3 Query: 369 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRS 536 FD S VYVGN+ V ++ L +F G V K++ S FGFV Y Sbjct: 184 FDSSN--RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEE 241 Query: 537 AALAIMTLHGRHIYGQAIKVNWAFA 611 AI +L G + G+AI+V+ A A Sbjct: 242 VNNAIESLDGVDLNGRAIRVSPAEA 266 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 4/73 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 ++VGN+ + L E+F+ +G VE ++I + + FGFV + A Sbjct: 89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQF 148 Query: 561 HGRHIYGQAIKVN 599 +G + G+A++VN Sbjct: 149 NGYELDGRALRVN 161
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 38.1 bits (87), Expect = 0.020 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 VYVGN+ +V L ++F G V +++ ++ FGFV D AI L Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 561 HGRHIYGQAIKVNWA 605 G+++ G+AI+VN A Sbjct: 306 DGQNLEGRAIRVNVA 320 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSA 539 +PS ++VGN+ +V L +F+ +G VE ++I ++ FGFV A Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 A+ + + G+ + VN A Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKA 226
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 37.7 bits (86), Expect = 0.027 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAALAIMT 557 ++ V + ++T+ L +F+ GP+ C++++ K+ SFG FVD+ A AI T Sbjct: 103 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKT 162 Query: 558 LHGRHIYGQAIKVNWA 605 ++G + + +KV++A Sbjct: 163 VNGITVRNKRLKVSYA 178
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 37.7 bits (86), Expect = 0.027 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%) Frame = +3 Query: 381 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-----FGFVDYYDRRSAAL 545 T + V N+ + + E+F G ++ +L +K + FGFVD+ ++ A Sbjct: 822 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 881 Query: 546 AIMTL-HGRHIYGQAIKVNWA 605 A L H H+YG+ + + WA Sbjct: 882 AFNALCHSTHLYGRRLVLEWA 902 Score = 36.6 bits (83), Expect = 0.059 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS-------FGFVDYYDRRSAALA 548 ++++ N++ + TE L VF G ++ C + +K+ + FGFV+Y A A Sbjct: 723 TLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 782 Query: 549 IMTLHGRHIYGQAIKV 596 + L G + G ++V Sbjct: 783 LKQLQGHTVDGHKLEV 798
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 37.7 bits (86), Expect = 0.027 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 23/115 (20%) Frame = +3 Query: 330 QMEPVSNGNLPPGFD------PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK 491 Q +P +NGN G T ++ V + +TE+ + +F G +E KLIR Sbjct: 124 QAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD 183 Query: 492 EKS-----------------SFGFVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 + +GFV+Y + A A+ L+G + + IKV++A Sbjct: 184 KSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 238
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 37.4 bits (85), Expect = 0.035 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 9/88 (10%) Frame = +3 Query: 372 DPSTCRSV-----YVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFG----FVDYY 524 +P RSV +V ++H E+ + E F G ++ L ++ F V+Y Sbjct: 63 EPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 122 Query: 525 DRRSAALAIMTLHGRHIYGQAIKVNWAF 608 + A A L+G I GQ I+V+W F Sbjct: 123 THKQALAAKEALNGAEIMGQTIQVDWCF 150
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/72 (27%), Positives = 30/72 (41%) Frame = +3 Query: 381 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTL 560 T ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGL 131 Query: 561 HGRHIYGQAIKV 596 G+ + V Sbjct: 132 DNTEFQGKRMHV 143
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/72 (27%), Positives = 30/72 (41%) Frame = +3 Query: 381 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTL 560 T ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 76 TSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGL 131 Query: 561 HGRHIYGQAIKV 596 G+ + V Sbjct: 132 DNTEFQGKRMHV 143
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 573 IYGQAIKV 596 G+ + V Sbjct: 136 FQGKRMHV 143
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 573 IYGQAIKV 596 G+ + V Sbjct: 136 FQGKRMHV 143
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 37.4 bits (85), Expect = 0.035 Identities = 20/60 (33%), Positives = 35/60 (58%) Frame = +3 Query: 417 NVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRHIYGQAIKV 596 +V E+ L E+F GP++ K++ + F FV++ + SAA AI +HG+ Q ++V Sbjct: 135 DVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 190
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 37.4 bits (85), Expect = 0.035 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAALAIMT 557 ++ V + ++T+ L +F+ GP+ C+++R K+ SFG FVD+ + AI + Sbjct: 111 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKS 170 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + +KV++A Sbjct: 171 LNGITVRNKRLKVSYA 186
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 573 IYGQAIKV 596 G+ + V Sbjct: 136 FQGKRMHV 143
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 37.4 bits (85), Expect = 0.035 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 ++VG ++ N E L + F GP+ +++ ++ FGF+ + + A++A+ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 561 HGRHIYGQAIKVNWA 605 +G + G+ I+V+ A Sbjct: 68 NGESLDGRQIRVDHA 82
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 37.4 bits (85), Expect = 0.035 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS--SFG--FVDYYDRRSAALAIMT 557 ++ V + ++T+ L +F+ GP+ C++++ K+ SFG FVD+ A AI + Sbjct: 86 NLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKS 145 Query: 558 LHGRHIYGQAIKVNWA 605 L+G + + +KV++A Sbjct: 146 LNGVTVRNKRLKVSYA 161
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 573 IYGQAIKV 596 G+ + V Sbjct: 136 FQGKRMHV 143
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 37.4 bits (85), Expect = 0.035 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +++GN+ TE + +F+ G V C +I+ ++GFV D+ +A AI LH Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 59 Query: 573 IYGQAIKV 596 ++G I V Sbjct: 60 LHGVNINV 67 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ P T L F+ GPV C +++ + FV A AI L Sbjct: 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTE 135 Query: 573 IYGQAIKV 596 G+ + V Sbjct: 136 FQGKRMHV 143
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 37.4 bits (85), Expect = 0.035 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%) Frame = +3 Query: 360 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYD 527 P F P+ +YVGN+ ++ + L +VF G V +++ +S FGFV Sbjct: 184 PRTFQPTY--RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSS 241 Query: 528 RRSAALAIMTLHGRHIYGQAIKVNWA 605 + AI L G+ + G+ I+VN A Sbjct: 242 EAEMSEAIANLDGQTLDGRTIRVNAA 267 Score = 31.2 bits (69), Expect = 2.5 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSA 539 +PS ++VGN+ ++ L ++FQ +G VE ++I ++ FGFV A Sbjct: 92 EPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEA 151 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 A+ + G+ + VN A Sbjct: 152 DKAVELYSQYDLNGRLLTVNKA 173
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 37.0 bits (84), Expect = 0.045 Identities = 24/77 (31%), Positives = 39/77 (50%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAI 551 DP T +V+VG + P TE L +F+ GP+ ++ + GFV + R A +I Sbjct: 356 DP-TNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI--PNGKNCGFVKFEKRIDAEASI 412 Query: 552 MTLHGRHIYGQAIKVNW 602 L G + G I+++W Sbjct: 413 QGLQGFIVGGSPIRLSW 429 Score = 33.9 bits (76), Expect = 0.38 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%) Frame = +3 Query: 375 PSTCR-SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR-------KEKSSFGFVDYYDR 530 PST S++VG++ P TE L+ +FQ + K +R FGFV + D Sbjct: 187 PSTPEFSLFVGDLSPTATEADLLSLFQTR--FKSVKTVRVMTDPLTGSSRCFGFVRFGDE 244 Query: 531 RSAALAIMTLHGRHIYGQAIKVNWA 605 A++ + G+ G+A++V +A Sbjct: 245 DERRRALIEMSGKWFQGRALRVAYA 269
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 37.0 bits (84), Expect = 0.045 Identities = 19/66 (28%), Positives = 36/66 (54%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 VY+G + ++ + F+G G + + K+ FGFVD+ D+R A A+ L+G+ Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIM----KNGFGFVDFQDQRDADDAVHDLNGKE 59 Query: 573 IYGQAI 590 + G+ + Sbjct: 60 LCGERV 65
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 37.0 bits (84), Expect = 0.045 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 VYVGN+ V + L +F G V ++I S FGFV Y + AI +L Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 561 HGRHIYGQAIKVNWAFA 611 G + G+ I+V+ A A Sbjct: 266 DGADLDGRQIRVSEAEA 282
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 37.0 bits (84), Expect = 0.045 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 399 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSSFGFVDYYDRRSAALAIMTLHG 566 + NV + T E+ + G +ERC L+ E +GFV+Y + AA A + L G Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLG 205 Query: 567 RHIYGQAIKVNW 602 R + A+ W Sbjct: 206 RQLGASALFAQW 217
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 37.0 bits (84), Expect = 0.045 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 8/93 (8%) Frame = +3 Query: 345 SNGNLPPGFDPSTCR----SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--- 503 SNGN+P + R +++G + + L + F G V K+I ++ Sbjct: 17 SNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSR 76 Query: 504 -FGFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 FGFV++ D +A AI + G+ + G+ I+VN Sbjct: 77 GFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109
>DND1_HUMAN (Q8IYX4) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 353 Score = 37.0 bits (84), Expect = 0.045 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Frame = +3 Query: 351 GNLPPGF---DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGF 512 G PPG+ P V++G + +V E+ LI +FQ G + +L+ F + Sbjct: 43 GGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLNRGFAY 102 Query: 513 VDYYDRRSAALAIMTLH 563 Y RR A AI TLH Sbjct: 103 ARYSSRRGAQAAIATLH 119
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 37.0 bits (84), Expect = 0.045 Identities = 20/72 (27%), Positives = 36/72 (50%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHG 566 + VYVGN+ +V E + ++F G ++ + +F FV++ D R A A+ G Sbjct: 9 QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDG 68 Query: 567 RHIYGQAIKVNW 602 G+ I+V + Sbjct: 69 YEFDGRRIRVEF 80
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 37.0 bits (84), Expect = 0.045 Identities = 23/68 (33%), Positives = 33/68 (48%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 VYVG + + T L E+F G + + + R+ F FV+Y D R A A+ L G Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG-FAFVEYDDVRDAEDAVRALDGSR 63 Query: 573 IYGQAIKV 596 I G +V Sbjct: 64 ICGVRARV 71
>PDIP3_HUMAN (Q9BY77) Polymerase delta-interacting protein 3 (46 kDa DNA| polymerase delta interaction protein) (p46) Length = 421 Score = 36.6 bits (83), Expect = 0.059 Identities = 24/79 (30%), Positives = 37/79 (46%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 542 P P + V N+HP VTE ++E+F G ++R +L+ + FV D A Sbjct: 272 PVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDD---AI 328 Query: 543 LAIMTLHGRHIYGQAIKVN 599 A + R + GQ +K N Sbjct: 329 TAYKKYNNRCLDGQPMKCN 347
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 36.6 bits (83), Expect = 0.059 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = +3 Query: 363 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 539 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 70 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 127 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 +A + L + G+ ++V +A Sbjct: 128 EIAKVELDNMPLRGKQLRVRFA 149
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 36.6 bits (83), Expect = 0.059 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = +3 Query: 363 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 539 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 122 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 +A + L + G+ ++V +A Sbjct: 123 EIAKVELDNMPLRGKQLRVRFA 144
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 36.6 bits (83), Expect = 0.059 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = +3 Query: 363 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 539 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 65 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 122 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 +A + L + G+ ++V +A Sbjct: 123 EIAKVELDNMPLRGKQLRVRFA 144
>PRGC1_RAT (Q9QYK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 36.6 bits (83), Expect = 0.059 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 521 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 675 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 720
>PRGC1_PIG (Q865B6) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 36.6 bits (83), Expect = 0.059 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 521 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 675 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 720
>PRGC1_BOVIN (Q865B7) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 796 Score = 36.6 bits (83), Expect = 0.059 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 521 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 675 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 720
>PRGC1_HUMAN (Q9UBK2) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) (Ligand effect modulator 6) Length = 798 Score = 36.6 bits (83), Expect = 0.059 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 521 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 677 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 722
>PRGC1_MOUSE (O70343) Peroxisome proliferator-activated receptor gamma| coactivator 1-alpha (PPAR gamma coactivator 1-alpha) (PPARGC-1-alpha) (PGC-1-alpha) Length = 797 Score = 36.6 bits (83), Expect = 0.059 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDY 521 R +YVG + P+ T L + F+ G +E C + +R + S+GF+ Y Sbjct: 676 RVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY 721
>PDIP3_MOUSE (Q8BG81) Polymerase delta-interacting protein 3| Length = 420 Score = 36.6 bits (83), Expect = 0.059 Identities = 24/79 (30%), Positives = 37/79 (46%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 542 P P + V N+HP VTE ++E+F G ++R +L+ + FV D A Sbjct: 272 PVLSPLEGTKMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDD---AI 328 Query: 543 LAIMTLHGRHIYGQAIKVN 599 A + R + GQ +K N Sbjct: 329 TAYKKYNNRCLDGQPMKCN 347
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 36.6 bits (83), Expect = 0.059 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = +3 Query: 363 PGFDPSTCRS-VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA 539 PG T RS ++VGN+ P++TE + ++F+ G I K+K FGF+ R A Sbjct: 67 PGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEV-FIHKDK-GFGFIRLETRTLA 124 Query: 540 ALAIMTLHGRHIYGQAIKVNWA 605 +A + L + G+ ++V +A Sbjct: 125 EIAKVELDNMPLRGKQLRVRFA 146
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 36.2 bits (82), Expect = 0.077 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTLH 563 R+VYVGN+ ++ E + ++F GPV + L + + FV++ D R A AI Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRD 66 Query: 564 GRHIYGQAIKVNWA 605 G G ++V A Sbjct: 67 GYDFDGHRLRVELA 80
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 36.2 bits (82), Expect = 0.077 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTL 560 ++Y+ N+ +V + L E+F G V CK++ + FGFV Y + A LA+ + Sbjct: 329 NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 561 HGRHI 575 +G+ I Sbjct: 389 NGKMI 393 Score = 34.7 bits (78), Expect = 0.23 Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVER---CKLIRKEKSSFGFVDYYDRRSAALAIMTL 560 S+YVG++ P+V E+ L+++F PV C+ + + +V++ + A+ A+ +L Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESL 105 Query: 561 HGRHIYGQAIKV 596 + I + I++ Sbjct: 106 NYAPIRDRPIRI 117
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 36.2 bits (82), Expect = 0.077 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Frame = +3 Query: 366 GFDPSTCRSV-----YVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF----GFVD 518 G +P RSV +V VH TE + + F G ++ L ++ + V+ Sbjct: 61 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 120 Query: 519 YYDRRSAALAIMTLHGRHIYGQAIKVNWAF 608 Y + A A+ L+G+ + GQ I V+W F Sbjct: 121 YETYKEAQAAMEGLNGQDLMGQPISVDWCF 150
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 36.2 bits (82), Expect = 0.077 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Frame = +3 Query: 366 GFDPSTCRSV-----YVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF----GFVD 518 G +P RSV +V VH TE + + F G ++ L ++ + V+ Sbjct: 61 GDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVE 120 Query: 519 YYDRRSAALAIMTLHGRHIYGQAIKVNWAF 608 Y + A A+ L+G+ + GQ I V+W F Sbjct: 121 YETYKEAQAAMEGLNGQDLMGQPISVDWCF 150
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 35.8 bits (81), Expect = 0.10 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 VYVGN+ + +++ + F GP+ R + + F FV++ DRR A A L G Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPL-RNVWVARNPPGFAFVEFEDRRDAEDATRALDGTR 71 Query: 573 IYGQAIKV 596 G I+V Sbjct: 72 CCGTRIRV 79
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 35.8 bits (81), Expect = 0.10 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 542 P P R V N HP + ++L ++F G + L+ + + G+V Y DR+SA Sbjct: 385 PPETPVKERLFVVFNPHP-LPLDVLEDIFCRFGNLIEVYLVSGK--NVGYVKYADRKSAN 441 Query: 543 LAIMTLHGRHIYGQAIKV 596 AI TLHG+ + G +KV Sbjct: 442 EAITTLHGKILNGVRLKV 459
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 35.8 bits (81), Expect = 0.10 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +3 Query: 336 EPVSNGNLPPGFDPSTCRSVYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKE--KSSF 506 +P GN+ P R+VYVGN++ T + L+E F+ G V+ ++ E + F Sbjct: 52 QPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRF 111 Query: 507 GFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 FV++ D+ S A + +G + +K+N Sbjct: 112 AFVEFADQNSVPRA-LAFNGVMFGDRPLKIN 141
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 35.8 bits (81), Expect = 0.10 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +3 Query: 336 EPVSNGNLPPGFDPSTCRSVYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKE--KSSF 506 +P GN+ P R+VYVGN++ T + L+E F+ G V+ ++ E + F Sbjct: 52 QPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRF 111 Query: 507 GFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 FV++ D+ S A + +G + +K+N Sbjct: 112 AFVEFADQNSVPRA-LAFNGVMFGDRPLKIN 141
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 35.8 bits (81), Expect = 0.10 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +3 Query: 336 EPVSNGNLPPGFDPSTCRSVYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKE--KSSF 506 +P GN+ P R+VYVGN++ T + L+E F+ G V+ ++ E + F Sbjct: 49 QPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRF 108 Query: 507 GFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 FV++ D+ S A + +G + +K+N Sbjct: 109 AFVEFADQNSVPRA-LAFNGVMFGDRPLKIN 138
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 35.8 bits (81), Expect = 0.10 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAALAIM 554 R VY+G++ + TE ++++ GPV K++ + F+++ D S+A A+ Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 77 Query: 555 TLHGRHIYGQAIKVNWA 605 L+G + + +K ++ Sbjct: 78 NLNGYQLGSRFLKCGYS 94
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 35.8 bits (81), Expect = 0.10 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSA 539 D +TCR V N+ + E+ L ++F G V R + R + + F FV + R A Sbjct: 174 DENTCR---VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDA 230 Query: 540 ALAIMTLHGRHIYGQAIKVNW 602 A AI L+ +Y +KV W Sbjct: 231 ARAIAELNDIRMYHMVLKVEW 251
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 35.8 bits (81), Expect = 0.10 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 RSV+VGN+ E L + F+ G +E ++IR K++ F +V + D +S + A++ Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418 Query: 555 TLHGRHIY 578 LH + I+ Sbjct: 419 -LHEKKIH 425
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 35.4 bits (80), Expect = 0.13 Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 ++VG ++ N E L + F GP+ +++ ++ FGF+ + + A+ A+ + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 561 HGRHIYGQAIKVNWA 605 +G + G+ I+V+ A Sbjct: 68 NGESLDGRQIRVDHA 82
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 35.0 bits (79), Expect = 0.17 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%) Frame = +3 Query: 372 DPSTC------RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYD 527 DPST + ++V N+ + L +F+ G V ++I E+ S FGFV Sbjct: 142 DPSTSSGPDGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMER 201 Query: 528 RRSAALAIMTLHGRHIYGQAIKVNWAFA 611 + A A LHG I G+ I+VN A A Sbjct: 202 PQDAERARQELHGSMIEGRKIEVNCATA 229
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy| suppressor of sporulation protein msa2) Length = 529 Score = 34.7 bits (78), Expect = 0.23 Identities = 16/59 (27%), Positives = 35/59 (59%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTL 560 CR+V++GN+ +TE+ + E + GP+++ K++ + + FV + + +A A+ L Sbjct: 205 CRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER--NIAFVHFLNIAAAIKAVQEL 261 Score = 31.6 bits (70), Expect = 1.9 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%) Frame = +3 Query: 354 NLPPGFDP------STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF-GF 512 N PG+ P ++VYVGN+ PN + ++ + +GP+E ++ ++ +F F Sbjct: 98 NFAPGYFPLPNNTTQPVKTVYVGNLPPNTPIDEILSCVR-TGPIESAWILPEKNCAFISF 156 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNW 602 +D +A L I G +KV W Sbjct: 157 LD-PSHATAFFQDAALKRLTIRGTEVKVGW 185 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSA--ALAIMTL 560 R+VY+GN+H + T + +G G + + + ++ FV + D SA + + Sbjct: 323 RTVYIGNIHADTTIEEICNAVRG-GLLHNIRYL--QEKHICFVTFVDPVSAFRFFEMSNI 379 Query: 561 HGRHIYGQAIKVNW 602 HG I + +K+ W Sbjct: 380 HGLVIRNRRLKIGW 393
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 34.7 bits (78), Expect = 0.23 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIMTL 560 +YVGN+ ++T + L E+F +G V ++ + F FV A AI Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175 Query: 561 HGRHIYGQAIKVNW 602 G + G+ +KVN+ Sbjct: 176 DGSQVGGRTVKVNF 189
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 34.7 bits (78), Expect = 0.23 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGF 512 S+ + G+D + ++Y+ + PN T+ L+++ Q G + K I + ++ +GF Sbjct: 48 SSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGF 107 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIK 593 VD+ +A A+ L + Q K Sbjct: 108 VDFDSPAAAQKAVSALKANGVQAQMAK 134
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 34.7 bits (78), Expect = 0.23 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 +YVGN+ + + L ++F G V +++ ++ FGFV + AI L Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291 Query: 561 HGRHIYGQAIKVNWA 605 G+ + G+ I+VN A Sbjct: 292 DGQSLDGRTIRVNVA 306
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 34.7 bits (78), Expect = 0.23 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = +3 Query: 441 EVFQGSGPVERCKLIRKE----KSSFGFVDYYDRRSAALAIMTLHGRHIYGQAIKVNW 602 E+ + G +ERC L+ E +GFV+Y + AA A + L GR + A+ W Sbjct: 149 ELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASALFAQW 206
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%) Frame = +3 Query: 324 MTQME-PVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR---- 488 MT +E NG+ +P R ++VG + N T++L+ E + G + ++R Sbjct: 1 MTDVEIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTT 60 Query: 489 KEKSSFGFVDY 521 K FGFV + Sbjct: 61 KRSRGFGFVTF 71
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 34.7 bits (78), Expect = 0.23 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 RSV+VGN+ +E L + F GP+E +++R K++ F +V + D S A++ Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318 Query: 555 TLHGRHIYGQAIKV 596 + G+ K+ Sbjct: 319 LNDKKMAVGKGRKL 332
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 34.3 bits (77), Expect = 0.29 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 4/92 (4%) Frame = +3 Query: 342 VSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFG 509 +S G PP + T S+ V N+ + + L VF+ G V + R KE F Sbjct: 1 MSYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFA 58 Query: 510 FVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 FV ++D+R A A+ + G + G+ ++V A Sbjct: 59 FVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 90
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 34.3 bits (77), Expect = 0.29 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Frame = +3 Query: 399 VGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS---SFGFVDYYDRRSAALAIMTLHGR 569 V N+H N+T+ + +F+ G +E L R +++ FG++ Y + SA A+ ++G Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGF 403 Query: 570 HIYGQAIKV 596 + G+ ++V Sbjct: 404 DLAGRNMRV 412
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 34.3 bits (77), Expect = 0.29 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 S+ + N+ T N L F+ G + + R ++ FGFV +Y+RR A A+ Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79 Query: 558 LHGRHIYGQAIKVNWA 605 G+ + G+ ++V A Sbjct: 80 TDGKLVDGRELRVTLA 95
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 34.3 bits (77), Expect = 0.29 Identities = 27/78 (34%), Positives = 40/78 (51%) Frame = +3 Query: 363 PGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAA 542 P P R V N HP + ++L ++F G + L+ + + G+V Y DR SA Sbjct: 385 PPETPVKERLFIVFNPHP-LPLDVLEDIFCRFGNLIEVYLVSGK--NVGYVKYADRMSAN 441 Query: 543 LAIMTLHGRHIYGQAIKV 596 AI TLHG+ + G +KV Sbjct: 442 DAITTLHGKILNGVRLKV 459
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 34.3 bits (77), Expect = 0.29 Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMT 557 S+YVG++ +V E+ L + F +GPV ++ R + + +V++ A A+ T Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62 Query: 558 LHGRHIYGQAIKVNWA 605 ++ + + I++ W+ Sbjct: 63 MNFDLVRNKPIRIMWS 78
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 34.3 bits (77), Expect = 0.29 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIM 554 + ++VG + +V E LIE F G VE+ ++I ++S FGFV Y+ AA Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV-YFQNHDAADKAA 156 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G ++V A Sbjct: 157 VVKFHPIQGHRVEVKKA 173
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 33.9 bits (76), Expect = 0.38 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 ++VGN+ + E+FQ G V C ++R ++GFV AI L+GR Sbjct: 88 IFVGNLTDKTRAPEVRELFQKYGTVVECDIVR----NYGFVHLDCVGDVQDAIKELNGRV 143 Query: 573 IYGQAIKV 596 + GQ +KV Sbjct: 144 VDGQPLKV 151
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIM 554 RS++VGN+ P+VT + + F+ G ++R L+ + +G++++ A+ Sbjct: 64 RSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ 123 Query: 555 TLHGRHIYGQAIKVN 599 L+G + G+ I V+ Sbjct: 124 -LNGGELKGKKIAVS 137
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 33.9 bits (76), Expect = 0.38 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIMTL 560 +YVGN+ V + L +F G V ++I S FGFV + AI +L Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 561 HGRHIYGQAIKVNWAFA 611 +G + G+ I+V+ A A Sbjct: 319 NGADLDGRQIRVSEAEA 335
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 33.9 bits (76), Expect = 0.38 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAI 551 ST + ++V N+ + L ++F G + ++I E+ S FGFV + + A A Sbjct: 118 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 177 Query: 552 MTLHGRHIYGQAIKVNWAFA 611 LHG + G+ I+VN A A Sbjct: 178 EKLHGTVVEGRKIEVNNATA 197
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 33.9 bits (76), Expect = 0.38 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 512 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V ++D+R A A+ + G + G+ ++V A Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 33.9 bits (76), Expect = 0.38 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 512 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V ++D+R A A+ + G + G+ ++V A Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 33.9 bits (76), Expect = 0.38 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 512 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V ++D+R A A+ + G + G+ ++V A Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 33.9 bits (76), Expect = 0.38 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%) Frame = +3 Query: 345 SNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGF 512 S G PP + T S+ V N+ + + L VF+ G V + R KE F F Sbjct: 1 SYGRPPPDVEGMT--SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 58 Query: 513 VDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 V ++D+R A A+ + G + G+ ++V A Sbjct: 59 VRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 89
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 33.5 bits (75), Expect = 0.50 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 ++++V + + TE L E F+GS R +++ ++ FGFVD+ A A Sbjct: 574 KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 630 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G + ++WA Sbjct: 631 AMEDGEIDGNKVTLDWA 647
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYDRRSAALAIM 554 RS+YVGNV T L F G G V R C F ++++ D+ S + + Sbjct: 167 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS-L 225 Query: 555 TLHGRHIYGQAIKV 596 L G+ IKV Sbjct: 226 ALDESLFRGRQIKV 239
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 17/92 (18%) Frame = +3 Query: 381 TCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS-----------------SFG 509 T ++ V + +TE+ + +F G +E KLIR + +G Sbjct: 183 TRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYG 242 Query: 510 FVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 FV+Y + A A+ L+G + + IKV++A Sbjct: 243 FVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA 274
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYDRRSAALAIM 554 RS+YVGNV T L F G G V R C F ++++ D+ S + + Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS-L 229 Query: 555 TLHGRHIYGQAIKV 596 L G+ IKV Sbjct: 230 ALDESLFRGRQIKV 243
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 33.5 bits (75), Expect = 0.50 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYDRRSAALAIM 554 RS+YVGNV T L F G G V R C F ++++ D+ S + + Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS-L 229 Query: 555 TLHGRHIYGQAIKV 596 L G+ IKV Sbjct: 230 ALDESLFRGRQIKV 243
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 33.5 bits (75), Expect = 0.50 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 ++++V + + TE L E F+GS R +++ ++ FGFVD+ A A Sbjct: 568 KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 624 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G + ++WA Sbjct: 625 AMEDGEIDGNKVTLDWA 641 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = +3 Query: 366 GFDPSTCRSVYVGNVHPNVTENLL---IEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRS 536 G +P+T ++++GN++PN + N L I + + FG+VD+ Sbjct: 301 GSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVRTGTNRKFGYVDFESAED 360 Query: 537 AALAIMTLHGRHIYGQAIKV 596 A + L G ++G IK+ Sbjct: 361 LEKA-LELTGLKVFGNEIKL 379
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 33.5 bits (75), Expect = 0.50 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 ++++V + + TE L E F+GS R +++ ++ FGFVD+ A A Sbjct: 571 KTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 627 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G + ++WA Sbjct: 628 AMEDGEIDGNKVTLDWA 644
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = +3 Query: 369 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR-KEKSSFGFVDYYDRRSAAL 545 F P R++++GN+ T + L +FQ G + + + + F+ Y D S Sbjct: 433 FHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCK 492 Query: 546 AIMTLHGRHIYGQAIKVNW 602 AI + G ++ +K+ + Sbjct: 493 AIKKMDGEYLGNNRLKLGF 511
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Frame = +3 Query: 369 FDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIR-KEKSSFGFVDYYDRRSAAL 545 F P R++++GN+ T + L +FQ G + + + + F+ Y D S Sbjct: 432 FHPKATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCK 491 Query: 546 AIMTLHGRHIYGQAIKVNW 602 AI + G ++ +K+ + Sbjct: 492 AIKKMDGEYLGNNRLKLGF 510
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 33.1 bits (74), Expect = 0.66 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR---KEKSSFGFVDYYDRRSAALAIMTLH 563 ++VG+++ TE + E+F G VE L+R ++ GFV Y + +A AI L+ Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272 Query: 564 GRH 572 G + Sbjct: 273 GTY 275
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS---FGFVDYYDRRSAALAIMTLH 563 + + N+ T+ + ++F G ++ +L +K ++ FGFV+Y R A A+ L Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDNTTRGFGFVEYSTVREAQSAMEALK 780 Query: 564 GRHIYGQAIKVNWA 605 H+ G+ + + W+ Sbjct: 781 HTHLLGRHLVLQWS 794
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 33.1 bits (74), Expect = 0.66 Identities = 21/71 (29%), Positives = 37/71 (52%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +Y+GN+ +VTE L E+F G + + ++ +F +DY R +A A L GR Sbjct: 115 LYIGNLTSDVTEEELKELFSPYGEISEAFINAEKNFAFLKIDY--RANAERAKKDLDGRM 172 Query: 573 IYGQAIKVNWA 605 + I++ +A Sbjct: 173 RKNKPIRIRFA 183
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 33.1 bits (74), Expect = 0.66 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIR----KEKSSFGFVDYYDRRSAALAIMTL 560 ++V + + E+ L ++F G V +++R K FGF+ + A AI L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 561 HGRHIYGQAIKVNWA 605 + + YG+ + V A Sbjct: 163 NSQEFYGRVLNVQKA 177
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMT 557 R +++G + TEN + +F G +E C+++R FV + R A AI Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKA 167 Query: 558 LH 563 +H Sbjct: 168 MH 169
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 33.1 bits (74), Expect = 0.66 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE---KSSFGFVDYYDRRSAALAIMT 557 R +++G + TEN + +F G +E C+++R FV + R A AI Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 167 Query: 558 LH 563 +H Sbjct: 168 MH 169
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 32.7 bits (73), Expect = 0.86 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYAR 73 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 74 DGYDYDGYRLRVEF 87
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 32.7 bits (73), Expect = 0.86 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 15/103 (14%) Frame = +3 Query: 330 QMEPVSNGNLPP-----------GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERC 476 QM P S N P G D + ++Y+ + P T+ L+++ Q G + Sbjct: 28 QMAPPSPRNSTPNSSGGGGGGSGGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVST 87 Query: 477 KLIRKEKSS----FGFVDYYDRRSAALAIMTLHGRHIYGQAIK 593 K I + ++ +GFVD+ SA A+ L + Q K Sbjct: 88 KAILDKTTNKCKGYGFVDFDSPSSAQKAVTALKASGVQAQMAK 130
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 32.7 bits (73), Expect = 0.86 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 ++++V + + TE L E F GS R +++ ++ FGFVD+ A A Sbjct: 572 KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 628 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G + ++WA Sbjct: 629 AMEDGEIDGNKVTLDWA 645
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 32.7 bits (73), Expect = 0.86 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 ++++V + + TE L E F GS R +++ ++ FGFVD+ A A Sbjct: 571 KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 627 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G + ++WA Sbjct: 628 AMEDGEIDGNKVTLDWA 644
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 32.7 bits (73), Expect = 0.86 Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = +3 Query: 375 PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAA 542 P R + V ++ N T+ + E+F GP+ER +++ F F+ + + A Sbjct: 101 PQASRCIGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDAR 160 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 +A G + G+ I+V+++ Sbjct: 161 VAKDACTGMEVDGRRIRVDYS 181
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 32.7 bits (73), Expect = 0.86 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAI 551 RS++VG + T L F G ++ LI K + F F+ Y +AA A+ Sbjct: 346 RSIFVGQLDKETTREELNRRFSTHGKIQDINLIFKPTNIFAFIKYETEEAAAAAL 400
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 32.7 bits (73), Expect = 0.86 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 ++++V + + TE L E F GS R +++ ++ FGFVD+ A A Sbjct: 573 KTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 629 Query: 555 TLHGRHIYGQAIKVNWA 605 + I G + ++WA Sbjct: 630 AMEDGEIDGNKVTLDWA 646
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 4/87 (4%) Frame = +3 Query: 348 NGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFV 515 NG L F+ +++G++H VTE L +F+ K+ + K+ G++ Sbjct: 79 NGKLK-SFESKKLVPLFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYL 137 Query: 516 DYYDRRSAALAIMTLHGRHIYGQAIKV 596 ++ D+ A A+ L+ + G+ I++ Sbjct: 138 NFEDKEEAEKAMEELNYTKVNGKEIRI 164
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 74 DGYDYDGYRLRVEF 87
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 74 DGYDYDGYRLRVEF 87
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 74 DGYDYDGYRLRVEF 87
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 16 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 74 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 75 DGYDYDGYRLRVEF 88
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 32.3 bits (72), Expect = 1.1 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 RS++VGN+ E L + F+ G +E ++IR K++ F +V + D +S A++ Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 74 DGYDYDGYRLRVEF 87
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Frame = +3 Query: 357 LPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEK---SSFGFVDYYD 527 + P D R++++GN+ VTE+ L F G + + R + S++GF+ + + Sbjct: 364 ISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQTSTYGFLKFEN 423 Query: 528 RRSAALAIMTLHGRHIYGQAIKVNWAFA 611 + A + + G+ I IK+ + A Sbjct: 424 LDMSHRAKLAMSGKIIIRNPIKIGYGKA 451
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Frame = +3 Query: 384 CRSVYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTL 560 CR +YVGN+ P++ + +VF G + L R+ F FV++ D R A A+ Sbjct: 15 CR-IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73 Query: 561 HGRHIYGQAIKVNW 602 G G ++V + Sbjct: 74 DGYDYDGYRLRVEF 87
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAAL 545 +T R +YVG + V + +L F G + ++ ++ F FV++ AA Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62 Query: 546 AIMTLHGRHIYGQAIKVNWA 605 AI ++ ++G+ I+VN A Sbjct: 63 AIDNMNESELFGRTIRVNLA 82
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAAL 545 +T R +YVG + V + +L F G + ++ ++ F FV++ AA Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62 Query: 546 AIMTLHGRHIYGQAIKVNWA 605 AI ++ ++G+ I+VN A Sbjct: 63 AIDNMNESELFGRTIRVNLA 82
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 31.6 bits (70), Expect = 1.9 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAIMTL 560 + ++V N+ + L ++F G + ++I E+ S FGFV + + A A L Sbjct: 117 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 176 Query: 561 HGRHIYGQAIKVNWAFA 611 HG + G+ I+VN A A Sbjct: 177 HGTVVEGRKIEVNNATA 193
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 31.6 bits (70), Expect = 1.9 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK-EKSS--FGFVDYYDRRSAALAIMTLH 563 + V N+ T + E+F G ++ ++ +K +KS+ F FV++ + A A+ LH Sbjct: 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLH 824 Query: 564 GRHIYGQAIKVNWA 605 G H+ G+ + + +A Sbjct: 825 GVHLLGRRLVMQYA 838
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 31.6 bits (70), Expect = 1.9 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDYYDRRSAALAIMTL 560 + ++V N+ + L ++F G + ++I E+ S FGFV + + A A L Sbjct: 116 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 175 Query: 561 HGRHIYGQAIKVNWAFA 611 HG + G+ I+VN A A Sbjct: 176 HGTVVEGRKIEVNNATA 192
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Frame = +3 Query: 399 VGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAALAIMTLHGR 569 + N+ +E+ L VF G V + RK + FGFV + + A A+ ++ + Sbjct: 117 IRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMK 176 Query: 570 HIYGQAIKVNWAFA 611 I G+ + V+WA A Sbjct: 177 EIKGRTVAVDWAVA 190 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 7/66 (10%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDY---YDRRSAALA 548 +++VG + P+ L E+F GPV++C ++ ++ S FG+V + D + A Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Query: 549 IMTLHG 566 I T G Sbjct: 64 ITTFEG 69
>RSP5_CAEEL (Q10021) Probable splicing factor, arginine/serine-rich 5| (RNA-binding protein srp-3) (CeSC35-2) Length = 208 Score = 31.2 bits (69), Expect = 2.5 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRH 572 +Y+G + N E + +G G + + K F FVD+ D R A A L G+ Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISM----KYGFAFVDFEDSRDAEDACHDLDGKT 59 Query: 573 IYGQAIKV 596 + G ++++ Sbjct: 60 MEGSSMRL 67
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIM 554 RSV+VGN+ V E+ L E F G + +++R + FG+V ++ A + Sbjct: 285 RSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYV-LFENTDAVHLAL 343 Query: 555 TLHGRHIYGQAIKV 596 L+ + G+ ++V Sbjct: 344 KLNNSELMGRKLRV 357
>PTBP3_ARATH (Q6ICX4) Polypyrimidine tract-binding protein homolog 3| Length = 432 Score = 31.2 bits (69), Expect = 2.5 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIM------ 554 V+V NV ++EN L+++FQ G + + ++R + + + D SA A+ Sbjct: 8 VHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQA--LLQMQDVSSAVSALQFFTNVQ 65 Query: 555 -TLHGRHIYGQ 584 T+ GR++Y Q Sbjct: 66 PTIRGRNVYVQ 76
>CP192_PIG (P79430) Cytochrome P450 19 type II (EC 1.14.14.1) (Aromatase)| (CYPXIXA2) (Estrogen synthetase) (P-450AROM) Length = 503 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 360 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERC 476 P GF P C Y+ V VT +L+ FQ P +RC Sbjct: 429 PFGFGPRACAGKYIAMVMMKVTLVILLRRFQVQTPQDRC 467
>CP191_PIG (Q29624) Cytochrome P450 19 type I (EC 1.14.14.1) (Aromatase)| (CYPXIXA1) (Estrogen synthetase) (P-450AROM) Length = 503 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = +3 Query: 360 PPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERC 476 P GF P C Y+ V VT +L+ FQ P +RC Sbjct: 429 PFGFGPRACAGKYIAMVMMKVTLVILLRRFQVQTPQDRC 467
>NELFE_DROME (P92204) Negative elongation factor E| Length = 280 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/62 (30%), Positives = 32/62 (51%) Frame = +3 Query: 420 VTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 VTE+ L + F G + + + + S GFV + SA AI +HG+++ G ++V Sbjct: 175 VTEDFLKKTFNDYGTIVNVSM--EIEKSRGFVSFAKPESADRAIAEIHGKNVNGINLQVQ 232 Query: 600 WA 605 A Sbjct: 233 LA 234
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/81 (22%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Frame = +3 Query: 375 PSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLI----RKEKSSFGFVDYYDRRSAA 542 P R + V ++ N +++ + E+F GP+ER +++ + F F+ + A Sbjct: 93 PQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDAR 152 Query: 543 LAIMTLHGRHIYGQAIKVNWA 605 A + G + G+ I+V+++ Sbjct: 153 AAKDSCSGIEVDGRRIRVDFS 173
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIM 554 +SV++GNV N T + E F+G G + R + K++ +F ++++ D S A++ Sbjct: 61 KSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALV 120
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 7/66 (10%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDY---YDRRSAALA 548 +++VG + P+ + L E+F GPV++C ++ ++ S FG+V + D + A Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Query: 549 IMTLHG 566 I T G Sbjct: 64 ITTFEG 69
>ALG8_YEAST (P40351) Dolichyl pyrophosphate Glc1Man9GlcNAc2| alpha-1,3-glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl glucosyltransferase) Length = 577 Score = 30.8 bits (68), Expect = 3.3 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 Query: 455 ALENFNQKVLSDIRVYIPYIHTATCGWIKP 366 AL +F K+L+ + + +PY+HT +IKP Sbjct: 314 ALYSFMDKILTTVMLKLPYVHTFATKFIKP 343
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 30.8 bits (68), Expect = 3.3 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIM 554 RSV+VGN+ E L + F G +E +++R K++ F +V + + +S + A++ Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V N+ + E L E+F+ G + R L + + F F+ ++ R AA AI Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299 Query: 558 LHGRHIYGQAIKVNWA 605 + G + V WA Sbjct: 300 VSGFGYDHLILNVEWA 315
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK----EKSSFGFVDYYDRRSAALAIMT 557 ++ V N+ + E L E+F+ G + R L + + F F+ ++ R AA AI Sbjct: 240 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG 299 Query: 558 LHGRHIYGQAIKVNWA 605 + G + V WA Sbjct: 300 VSGFGYDHLILNVEWA 315
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 30.8 bits (68), Expect = 3.3 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIM 554 RSV+VGN+ V E+ + + F G + +++R + + FG+V + + S LA + Sbjct: 287 RSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA-L 345 Query: 555 TLHGRHIYGQAIKV 596 L+ + G+ ++V Sbjct: 346 KLNNSELMGRKLRV 359
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 30.4 bits (67), Expect = 4.2 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Frame = +3 Query: 336 EPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK-------- 491 E G+ G ST V V N+ T+ + E+F G ++ +L RK Sbjct: 625 ETKKGGDAEGGKTKST--KVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGA 682 Query: 492 -EKSSFGFVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 F F+++ AA A+ L H+ G+ + + WA Sbjct: 683 QSTRGFAFLEFTTHTEAARAMEALKHTHLLGRHLVLQWA 721
>MEI2_SCHPO (P08965) Meiosis protein mei2| Length = 750 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = +3 Query: 435 LIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRHIYGQAIKV 596 L + Q GP+ K +R + S ++YD R A+ A+ L GR I+ ++V Sbjct: 308 LQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRIIHNCCLQV 361
>NELFE_DROVI (Q95ZE9) Negative elongation factor E| Length = 281 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +3 Query: 420 VTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGRHIYGQAIKVN 599 VTE L + F G + + + + S GFV + SA AI +HG+ + G ++V Sbjct: 176 VTEEFLKKTFNDYGTIVNVSM--EIEKSRGFVSFAKPESADRAIAEMHGKSVTGIVLQVQ 233 Query: 600 WA 605 A Sbjct: 234 LA 235
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRK---EKSSFGFVDYYDRRSAALAIMTLH 563 + + N+ T+ + ++F G ++ ++ +K E F F +Y + A A+ L Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVSAKEAEHAMSALQ 764 Query: 564 GRHIYGQAIKVNWAFA 611 G H+ G+ + + +A A Sbjct: 765 GTHLLGRRLVLQYAQA 780
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKL----IRKEKSSFGFVDYYDRRSAALAIM 554 +SV++GNV N T + E F+G G + + + K++ +F ++++ D S A++ Sbjct: 101 KSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALV 160
>SCW1_SCHPO (O74452) Cell wall integrity protein scw1 (Strong cell wall protein| 1) Length = 561 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/71 (26%), Positives = 30/71 (42%) Frame = +3 Query: 354 NLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRR 533 N P C ++YVGN+ P+ +E L +F +R K FV++ + Sbjct: 415 NTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIP 474 Query: 534 SAALAIMTLHG 566 A A+ L G Sbjct: 475 YAMEALKNLQG 485
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 30.0 bits (66), Expect = 5.6 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVER----CKLIRKEKSSFGFVDYYDRRSAALAIM 554 +SVYVGNV +VT L F G V R C F ++++ + A++ Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114 Query: 555 TLHGRHIYGQAIKV 596 L+G ++ + +KV Sbjct: 115 -LNGSMLHERPLKV 127
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMTL 560 +++G ++ E L VF G + L++ +++ F FV + A A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 561 HGRHIYGQAIKVNWA 605 +G+ + G+AIKV A Sbjct: 70 NGKSLDGKAIKVEQA 84
>EF3B_YEAST (P53978) Elongation factor 3B (EF-3B) (Translation elongation| factor 3B) (Homolog of EF-3) Length = 1043 Score = 30.0 bits (66), Expect = 5.6 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +3 Query: 327 TQMEPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSF 506 T M ++NG + CR+VYV + N ++ + F SG V +I + F Sbjct: 470 TLMRSIANGQVDGFPTQDECRTVYVEHDIDNTHSDMSVLDFVYSGNVGTKDVITSKLKEF 529 Query: 507 GFVD 518 GF D Sbjct: 530 GFSD 533
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTLHGR 569 +YVGN+ +V E L ++F G + +L R F FV + D R A AI +G Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74 Query: 570 HIYGQ 584 + YGQ Sbjct: 75 YDYGQ 79
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTLHGR 569 +YVGN+ +V E L ++F G + +L R F FV + D R A AI +G Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 74 Query: 570 HIYGQ 584 + YGQ Sbjct: 75 YDYGQ 79
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 29.6 bits (65), Expect = 7.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +2 Query: 116 GSRGPSVPRCLDPVGVGG 169 G RGPSVP ++P G+GG Sbjct: 200 GPRGPSVPAGMNPTGIGG 217
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 29.6 bits (65), Expect = 7.2 Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Frame = +3 Query: 390 SVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSAALAIMT 557 +++VG + ++ + L + F+ G V ++I + + +G+VD+ ++ A AI Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQE 228 Query: 558 LHGRHIYGQAI 590 + G+ I G+ I Sbjct: 229 MQGKEIDGRPI 239
>POF_DROME (Q9W123) Protein painting of fourth (Zeste-interacting protein 16)| (Zip16 protein) Length = 495 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 330 QMEPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFG 509 +++P S+ DP S+YVGN+ N+T + + F + V+ L R++++ + Sbjct: 199 ELKPFSDEEQAEFIDPC---SLYVGNIPFNMTTSAIKAYFANAMRVDIGVLKREKRARYA 255 Query: 510 FVDY 521 FV Y Sbjct: 256 FVRY 259
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 29.6 bits (65), Expect = 7.2 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = +3 Query: 372 DPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS----FGFVDYYDRRSA 539 D +T R V N+ + E L ++F+ G ++R L + +++ F FV YYDR A Sbjct: 200 DSATLR---VTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCA 256 Query: 540 ALAIMTLHG 566 A L G Sbjct: 257 IKARDRLDG 265
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +3 Query: 351 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSS 503 G PP G PS ++VG + ++ E+ L+ +F+ +GP+ +L+ Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114 Query: 504 FGFVDYYDRRSAALAIMTLHGRHI 575 + FV + + +A A+ + I Sbjct: 115 YAFVTFCTKEAAQEAVKLYNNHEI 138
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Frame = +3 Query: 387 RSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAALAIM 554 RSV+VGN+ + ++ L E F G + +++R + FG+V ++ A + Sbjct: 291 RSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYV-LFENTDAVHLAL 349 Query: 555 TLHGRHIYGQAIKV 596 L+ + G+ ++V Sbjct: 350 KLNNSELMGRKLRV 363
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +3 Query: 351 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSS 503 G PP G PS ++VG + ++ E+ L+ +F+ +GP+ +L+ Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 504 FGFVDYYDRRSAALAIMTLHGRHI 575 + FV + + +A A+ + I Sbjct: 205 YAFVTFCTKEAAQEAVKLYNNHEI 228
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 29.6 bits (65), Expect = 7.2 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 9/84 (10%) Frame = +3 Query: 351 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKE----KSS 503 G PP G PS ++VG + ++ E+ L+ +F+ +GP+ +L+ Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 504 FGFVDYYDRRSAALAIMTLHGRHI 575 + FV + + +A A+ + I Sbjct: 205 YAFVTFCTKEAAQEAVKLYNNHEI 228
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/59 (25%), Positives = 28/59 (47%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGR 569 ++V N+HP ++ L E+F G ++ +L+ K F + Y + A + GR Sbjct: 726 IFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQFKGIAYVEFEKPGEAQRAVAGR 784
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 29.6 bits (65), Expect = 7.2 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 393 VYVGNVHPNVTENLLIEVFQGSGPVERCKL-IRKEKSSFGFVDYYDRRSAALAIMTLHGR 569 +YVGN+ +V E L ++F G + +L R F FV + D R A AI +G Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG- 75 Query: 570 HIYGQ 584 + YGQ Sbjct: 76 YDYGQ 80
>VL96_IRV1 (P22856) L96 protein| Length = 867 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/56 (30%), Positives = 24/56 (42%) Frame = +3 Query: 12 KNLTSSSSVPLLDPPREIRRQIY*SVGSNPPIRRSVRAGPRSPGVSIRSESEEMNG 179 K +T P PP +RR P + +S A PRS S+R+E + G Sbjct: 420 KKITRKPKSPRRSPPASVRRS------RTPSVPKSPSARPRSKSPSVRAEITDDEG 469
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Frame = +3 Query: 351 GNLPP-----GFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFV 515 G PP G P V+VG + ++ E+ L+ +F+ +GP+ +L+ + Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLM---------M 198 Query: 516 DYYDRRSAALAIMTLHGRHIYGQAIKV 596 D ++ A +T G+ +A+K+ Sbjct: 199 DPLSGQNRGYAFITFCGKEAAQEAVKL 225
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +3 Query: 393 VYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGR 569 ++VGNV + T L +F G V C ++++ F FV + A AI LHG Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ----FAFVHMRENAGAVRAIEALHGH 58 Query: 570 HIY-GQAIKV 596 + G+A+ V Sbjct: 59 ELRPGRALVV 68
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 29.3 bits (64), Expect = 9.5 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +3 Query: 393 VYVGNVH-PNVTENLLIEVFQGSGPVERCKLIRKEKSSFGFVDYYDRRSAALAIMTLHGR 569 ++VGNV + T L +F G V C ++++ F FV + A AI LHG Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQ----FAFVHMRENAGAVRAIEALHGH 58 Query: 570 HIY-GQAIKV 596 + G+A+ V Sbjct: 59 ELRPGRALVV 68
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%) Frame = +3 Query: 378 STCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKS----SFGFVDYYDRRSAAL 545 +T ++VG + + T+ L + F+G G +E +I ++ +GFV DR +A Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAER 67 Query: 546 A 548 A Sbjct: 68 A 68
>DOC2B_RAT (P70610) Double C2-like domain-containing protein beta (Doc2-beta)| Length = 412 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -3 Query: 180 RHSSPPTPTGSRHRGTEGPREPIDGSADWIQQINRFGGEF 61 R S+PP T GPR P DG+ D + +++ G + Sbjct: 51 RASAPPDAPARSPAATAGPRSPSDGARDDDEDVDQLFGAY 90
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 29.3 bits (64), Expect = 9.5 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = +3 Query: 348 NGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSS--FGFVDY 521 N N GF+ + ++++V + + TE L E F+GS R R SS FGFVD+ Sbjct: 541 NMNARGGFNQQS-KTLFVRGLSEDTTEETLRESFEGSISA-RIVTDRDTGSSKGFGFVDF 598 Query: 522 YDRRSAALAIMTLHGRHIYGQAIKVNWA 605 A A + I G + +++A Sbjct: 599 SSPEDAKAAKEAMEDGEIDGNKVTLDFA 626
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 29.3 bits (64), Expect = 9.5 Identities = 25/92 (27%), Positives = 45/92 (48%) Frame = +3 Query: 330 QMEPVSNGNLPPGFDPSTCRSVYVGNVHPNVTENLLIEVFQGSGPVERCKLIRKEKSSFG 509 ++EPV +P S +YVGN+ ++T++ L E+F+ G + + +F Sbjct: 286 ELEPVE---VPTETKFSGRNRLYVGNLTNDITDDELREMFKPYGEISEIFSNLDKNFTFL 342 Query: 510 FVDYYDRRSAALAIMTLHGRHIYGQAIKVNWA 605 VDY+ +A A L G G+ ++V +A Sbjct: 343 KVDYHP--NAEKAKRALDGSMRKGRQLRVRFA 372 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,805,634 Number of Sequences: 219361 Number of extensions: 1580939 Number of successful extensions: 5637 Number of sequences better than 10.0: 247 Number of HSP's better than 10.0 without gapping: 5253 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5565 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
