ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd19f11 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 88.6 bits (218), Expect = 6e-18 Identities = 50/119 (42%), Positives = 64/119 (53%), Gaps = 7/119 (5%) Frame = +3 Query: 93 GAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAK 254 G GD A + EL+ Q +V K+M P E K Sbjct: 106 GDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEK 165 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 428 E D+RS++VGNVDY T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+ Sbjct: 166 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES 224
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 88.6 bits (218), Expect = 6e-18 Identities = 50/119 (42%), Positives = 64/119 (53%), Gaps = 7/119 (5%) Frame = +3 Query: 93 GAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAK 254 G GD A + EL+ Q +V K+M P E K Sbjct: 106 GDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEK 165 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 428 E D+RS++VGNVDY T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+ Sbjct: 166 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES 224
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 88.2 bits (217), Expect = 8e-18 Identities = 41/57 (71%), Positives = 49/57 (85%), Gaps = 1/57 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVE 419 KE +D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSE 105
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 87.8 bits (216), Expect = 1e-17 Identities = 49/116 (42%), Positives = 63/116 (54%), Gaps = 7/116 (6%) Frame = +3 Query: 102 GDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAKEEM 263 GD A + EL+ Q +V K+M P E K E Sbjct: 105 GDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEA 164 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 428 D+RS++VGNVDY T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+ Sbjct: 165 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKES 220
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 69.3 bits (168), Expect = 4e-12 Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 Q K+AK ++ T E ++ +D++SVF+GNVD+ T EEV++HF CG + R TI Sbjct: 35 QNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPK 94 Query: 372 DKF-GQPKGFAYVEFVEAEA 428 DKF + K FAY+EF ++ + Sbjct: 95 DKFTKKQKNFAYIEFDDSSS 114
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 68.2 bits (165), Expect = 8e-12 Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 1/80 (1%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 Q K+AK ++ T E ++ +D++SVF+GNVD+ T EE+++HF CG + + TI Sbjct: 75 QNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPK 134 Query: 372 DKF-GQPKGFAYVEFVEAEA 428 DKF + K FAY+EF ++ + Sbjct: 135 DKFTKKQKNFAYIEFDDSSS 154
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 65.9 bits (159), Expect = 4e-11 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 8/72 (11%) Frame = +3 Query: 222 GDPNATTSEAKEEM-------DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 377 G P + +KEE DSRS+FVGN+ TPE+++ HF CG + R+T+L D+ Sbjct: 41 GTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRN 100 Query: 378 FGQPKGFAYVEF 413 G PKG+ Y+EF Sbjct: 101 TGTPKGYGYIEF 112
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 RSVFVGN+D+ E + +HF +CG++ V I+ D K KGFAYV+F E ++ Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQS 281
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 50.1 bits (118), Expect = 2e-06 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 1/51 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVE 419 RSVFVGN+D+ + E + +HF SCG + V I+ D K KGFAYV+F + Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFAD 309
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 49.3 bits (116), Expect = 4e-06 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 RSVFVGN+D+ E + +HF CG + V I+ D K KGFAYV+F + ++ Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQS 412
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 48.9 bits (115), Expect = 5e-06 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 RS+FVGN+D+ E + +HF CG + V I+ D K KGFAYV+F + ++ Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQS 332
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 48.9 bits (115), Expect = 5e-06 Identities = 20/51 (39%), Positives = 34/51 (66%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V NV+ A T EE+++HF+ CGT+ ++ D+ G+ KGF +V F E Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPE 355 Score = 28.1 bits (61), Expect = 9.2 Identities = 17/73 (23%), Positives = 34/73 (46%) Frame = +3 Query: 207 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ 386 KE+ G T K E ++++ N+D + + +++ F G + + I D+ Sbjct: 180 KEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL 239 Query: 387 PKGFAYVEFVEAE 425 +G+A+V F E Sbjct: 240 CRGYAFVNFDNPE 252
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 48.9 bits (115), Expect = 5e-06 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 428 D RSVFVGN+ Y +++HF CG++ V I+ DK G KGF YV F ++ Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDS 340
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 47.4 bits (111), Expect = 1e-05 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Frame = +3 Query: 195 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 A A G N + + + + D R +FVG + + T +E++ HF G + + + TD Sbjct: 32 AGAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90 Query: 375 -KFGQPKGFAYVEFVEAEA 428 + G+ +GFA++ F EA Sbjct: 91 PQTGRSRGFAFIVFTNTEA 109 Score = 30.0 bits (66), Expect = 2.4 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 +FVG + + EE++ +F G + V + DK Q KGF ++ F Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITF 184
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 47.0 bits (110), Expect = 2e-05 Identities = 18/63 (28%), Positives = 38/63 (60%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 +P+ ++ +F+ + ++CT EE+++ + GTV + ++T++ G+PKG AY Sbjct: 804 NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 863 Query: 405 VEF 413 VE+ Sbjct: 864 VEY 866 Score = 34.3 bits (77), Expect = 0.13 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 DS +VFV N+ Y+ + + F +CG V ++ + G +G+ YVEF E ++ Sbjct: 720 DSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKS 776
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 47.0 bits (110), Expect = 2e-05 Identities = 18/63 (28%), Positives = 38/63 (60%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 +P+ ++ +F+ + ++CT EE+++ + GTV + ++T++ G+PKG AY Sbjct: 786 NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 845 Query: 405 VEF 413 VE+ Sbjct: 846 VEY 848 Score = 34.7 bits (78), Expect = 0.098 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 DS +VFV N+ Y+ + + F +CG V ++ + G +G+ YVEF E ++ Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKS 758
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 46.2 bits (108), Expect = 3e-05 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 +VFVG +D E++ +F GTV V I+TD+ G KG+ +V F++ Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLD 85
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 45.8 bits (107), Expect = 4e-05 Identities = 17/51 (33%), Positives = 34/51 (66%) Frame = +3 Query: 261 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 ++ +F+ + ++CT EE++ + GTV + ++T++ G+PKG AYVE+ Sbjct: 798 LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEY 848 Score = 36.2 bits (82), Expect = 0.034 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 6/147 (4%) Frame = +3 Query: 6 GAQHAAAMEDEEHEVYGQEI---PVDAEDVEMG-AGGDDAAKLHELDXXXXXXXXXXXXX 173 GA EDEE+E +G+E P E A G+ +A E + Sbjct: 620 GADKRREDEDEENE-WGEEEEEQPSKRRRTENSLASGEASAMKEETELSGKCLTIDVGPP 678 Query: 174 XXXXXXQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQH--FNSCGT 347 A + ++M P +K DS +VFV N+ Y+ EV+ F CG Sbjct: 679 SKQKEKAASLKRDM----PKVAHDSSK---DSVTVFVSNLPYSIEEPEVKLRPLFEVCGE 731 Query: 348 VNRVTILTDKFGQPKGFAYVEFVEAEA 428 V ++ + G +G+ YVEF E ++ Sbjct: 732 VVQIRPIFSNRGDFRGYCYVEFGEEKS 758
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 45.4 bits (106), Expect = 6e-05 Identities = 22/65 (33%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Frame = +3 Query: 234 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVE 410 A+ +K+E S +FVGN+D+ T ++++HF G + RV ++T + G+ KGF +V+ Sbjct: 217 ASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275 Query: 411 FVEAE 425 F + + Sbjct: 276 FPDID 280
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFA 401 +PN E +E M S +++VGN+ + + E++ + F+ CGT+ R+ + D+F P GF Sbjct: 32 NPNGL-QELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFC 90 Query: 402 YV 407 ++ Sbjct: 91 FI 92
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/74 (27%), Positives = 46/74 (62%), Gaps = 1/74 (1%) Frame = +3 Query: 198 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 377 K A++++ DPN + + +++FV ++Y + ++++ F S G + RV ++TD+ Sbjct: 116 KAAEDLKKYDPNNDPNATGDPY--KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173 Query: 378 F-GQPKGFAYVEFV 416 +PKG+A++E++ Sbjct: 174 LTNKPKGYAFIEYM 187
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 44.7 bits (104), Expect = 1e-04 Identities = 23/65 (35%), Positives = 36/65 (55%) Frame = +3 Query: 231 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 410 ++T E S S+FVGN+ Y TPE++ + F+ G V R I+T + G +G VE Sbjct: 123 DSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVE 181 Query: 411 FVEAE 425 F ++ Sbjct: 182 FTNSD 186 Score = 31.2 bits (69), Expect = 1.1 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +R ++ N+ ++ ++ F + G VN + D G P G A VE+ Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEY 398
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 44.3 bits (103), Expect = 1e-04 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 428 D RSVFVGN+ Y +++HF CG++ V I+ + G +GF YV F +A Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDA 344
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 44.3 bits (103), Expect = 1e-04 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 428 D RSVFVGN+ Y +++HF CG++ V I+ + G +GF YV F +A Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDA 338
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 201 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 V++E +ATTS+ + ++ +VFVG +D E++ F G+V V I+ Sbjct: 13 VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72 Query: 369 TDKFGQPKGFAYVEF 413 TD+ G KG+ +V F Sbjct: 73 TDRTGVSKGYGFVSF 87
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/60 (40%), Positives = 36/60 (60%) Frame = +3 Query: 249 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 A+EE D R+VFVGN++ E + + F G + +VTI D+ G+PK F +V F E+ Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 425 RSVFVGN+ Y T E+++ F+ G+V ++ D+ G+PKG+ + E+ + E Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 43.5 bits (101), Expect = 2e-04 Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVEFVEAE 425 SR +FVGN+ + T + +++HF CG + ++ + T + G+ KGFA+++F E Sbjct: 238 SRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEE 291
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 43.5 bits (101), Expect = 2e-04 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 425 RSVFVGN+ Y T E+++ F+ G+V ++ D+ G+PKG+ + E+ + E Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQE 68
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 237 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 T + + RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ Sbjct: 5 TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64 Query: 414 VEAE 425 + E Sbjct: 65 QDQE 68
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 237 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 T + + RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ Sbjct: 5 TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64 Query: 414 VEAE 425 + E Sbjct: 65 QDQE 68
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 43.1 bits (100), Expect = 3e-04 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 237 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 T + + RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ Sbjct: 5 TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64 Query: 414 VEAE 425 + E Sbjct: 65 QDQE 68
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 42.7 bits (99), Expect = 4e-04 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 425 RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ + E Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 68
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 42.4 bits (98), Expect = 5e-04 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEF 413 R VFVGN+ + E + ++F CG+++ V I+ D K KGFAY++F Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 42.0 bits (97), Expect = 6e-04 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 S +VFVGN+ + T +++ F CG + + + TD + G+ KGF YV F + ++ Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 419 Score = 37.0 bits (84), Expect = 0.020 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3 Query: 228 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAY 404 P T +++ ++ +VFVG + + + + Q F GT+ ++ D + G+ KG+ Y Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308 Query: 405 VEFVEAEA 428 V+F EA Sbjct: 309 VDFETPEA 316
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 42.0 bits (97), Expect = 6e-04 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 201 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 +++E +A TS+ + ++ +VFVG +D E++ F G+V V I+ Sbjct: 13 ISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72 Query: 369 TDKFGQPKGFAYVEF 413 TD+ G KG+ +V F Sbjct: 73 TDRTGVSKGYGFVSF 87
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 42.0 bits (97), Expect = 6e-04 Identities = 21/48 (43%), Positives = 31/48 (64%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 R++FVGN++ T E + + F+ G V +V I DK G+PK FA+V F Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNF 57
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 42.0 bits (97), Expect = 6e-04 Identities = 21/48 (43%), Positives = 31/48 (64%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 R++FVGN++ T E + + F+ G V +V I DK G+PK FA+V F Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNF 57
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 42.0 bits (97), Expect = 6e-04 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 R VFVG +D+ E + + F+SCG V V I+ D K KGFAYV+F + + Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNS 327
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 42.0 bits (97), Expect = 6e-04 Identities = 21/61 (34%), Positives = 35/61 (57%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +A + S+FV N+ + CTPE++++ F + G V I+T K G +G VEF + E Sbjct: 114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNE 172 Query: 426 A 428 + Sbjct: 173 S 173 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 252 KEEMDSR-SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYV 407 +EE+D+ VF+ N+ Y+ + ++ F CG V R + D G +GF V Sbjct: 212 REEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSV 264
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 42.0 bits (97), Expect = 6e-04 Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Frame = +3 Query: 204 AKEMQGGDPNATTSEAKEEM--DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 377 A +Q + N + E ++ +++ +F+ N+ Y+C ++++ F G + +V + DK Sbjct: 299 ASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358 Query: 378 -FGQPKGFAYVEFVEAE 425 PKGFAY++F +A+ Sbjct: 359 KTNNPKGFAYIDFHDAD 375
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 41.6 bits (96), Expect = 8e-04 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 7/134 (5%) Frame = +3 Query: 33 DEEHEVYGQEIPVDAED---VEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKV 203 +E+H+ Q+ PV E VE A D +++ ++ Sbjct: 5 EEQHQQQQQQQPVAVETPSAVEAPASADPSSE-----------------QSVAVEGNSEQ 47 Query: 204 AKEMQG-GDPNATTSEA---KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 A++ QG DP+ + A E R ++VGN+D A T + ++Q+F G + + I+ Sbjct: 48 AEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI 107 Query: 372 DKFGQPKGFAYVEF 413 DK + +A+VE+ Sbjct: 108 DKNNKNVNYAFVEY 121
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 201 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 +++E +A TS+ + ++ +VFVG +D E++ F G+V V I+ Sbjct: 13 ISREANTQSSSAATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKII 72 Query: 369 TDKFGQPKGFAYVEF 413 TD+ G KG+ +V F Sbjct: 73 TDRTGVSKGYGFVSF 87
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 4/68 (5%) Frame = +3 Query: 222 GDPNATTSEAK----EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 G NA E+ M+ +FV N+ AC+ EE+ + F+ GT+ V ++ Q Sbjct: 704 GPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQF 763 Query: 390 KGFAYVEF 413 KG AYVEF Sbjct: 764 KGIAYVEF 771
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 41.2 bits (95), Expect = 0.001 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 QA A+E+Q P+ + AK + R +F+ N+ Y+ T ++ ++ F+ G + V + Sbjct: 300 QATPAEELQEEIPDEEQAIAKIQKTGR-LFLRNILYSSTEDDFKKLFSPYGELKEVHVAV 358 Query: 372 D-KFGQPKGFAYVEFVEAE 425 D + G KGFAYV F + E Sbjct: 359 DTRTGNSKGFAYVLFAKPE 377 Score = 35.4 bits (80), Expect = 0.058 Identities = 21/73 (28%), Positives = 38/73 (52%) Frame = +3 Query: 198 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 377 K+ ++ NA + E K+ + + + V N+ + T ++V + FNS G + V + Sbjct: 715 KIQLKLSHRQGNAGSQEKKKAKNGK-IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF 773 Query: 378 FGQPKGFAYVEFV 416 +GFA+VEFV Sbjct: 774 DKSARGFAFVEFV 786
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/47 (38%), Positives = 27/47 (57%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +VFVG +D E++ F G+V V I+TD+ G KG+ +V F Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSF 87
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEA 428 E S +FVG + + C E++++FN G V V ++ D Q P+GF ++ F + ++ Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQS 167
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 40.4 bits (93), Expect = 0.002 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEA 428 EE D+R+VF + P ++++ F++ G V V +++D+ + KG AYVEFV+ + Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSS 206
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = +3 Query: 231 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 410 N T++ + +FVG +D+ ++++ F+ G+V V I+ D+ G KG+ +V Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79 Query: 411 FVEAE 425 F E Sbjct: 80 FETQE 84
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 40.4 bits (93), Expect = 0.002 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = +3 Query: 231 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 410 N T++ + +FVG +D+ ++++ F+ G+V V I+ D+ G KG+ +V Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79 Query: 411 FVEAE 425 F E Sbjct: 80 FETQE 84
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYV 407 E ++ M S +++VGN+ + + E++ + F+ CG++ ++ + D+F P GF ++ Sbjct: 38 ELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFI 92
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 39.7 bits (91), Expect = 0.003 Identities = 15/50 (30%), Positives = 29/50 (58%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +FVG +D+ ++++ F+ G+V V I+ D+ G KG+ ++ F E Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQE 84
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 39.7 bits (91), Expect = 0.003 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422 R +F+G +DY T E ++QHF G + V ++ D K + +GF ++ + A Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRA 68 Score = 33.1 bits (74), Expect = 0.29 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEF 413 + +FVG + +++ +F GTV I+ DK + K GFA+VEF Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEF 156
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/56 (33%), Positives = 34/56 (60%) Frame = +3 Query: 258 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 E +S+++ V N+ YA + E +Q+ F ++ + + G+PKG+A+VEF AE Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAE 509
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 39.3 bits (90), Expect = 0.004 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = +3 Query: 210 EMQGGDPNATTSE--AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KF 380 + +P T E A++ ++ +F+ N+ Y + E+ + F+ G + V I D + Sbjct: 288 QQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRT 347 Query: 381 GQPKGFAYVEFVEAE 425 G+ KGF YV+F++ E Sbjct: 348 GKSKGFLYVQFLKKE 362 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 237 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEF 413 + S K+ S + + N+ + T +++ + F + G + V + KF Q +GFA+VEF Sbjct: 706 SASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRV-PKKFDQSARGFAFVEF 764
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 39.3 bits (90), Expect = 0.004 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEA 428 EE D+R+VF + P ++++ F++ G V V +++D+ + +G AYVEFV+ + Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSS 206
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 38.9 bits (89), Expect = 0.005 Identities = 16/73 (21%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +3 Query: 198 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 377 K+ +E+ DP + ++ R++F+ ++Y + ++++ F G + ++ ++ D+ Sbjct: 80 KLEREIALWDPTEIKNATEDPF--RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQ 137 Query: 378 -FGQPKGFAYVEF 413 G+PKG+A++E+ Sbjct: 138 ESGKPKGYAFIEY 150
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 88
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 418 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 253 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 88
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/62 (29%), Positives = 38/62 (61%) Frame = +3 Query: 240 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 T+E K+ +DS+ + + N+ + T ++VQ+ F + G++ V + + +GFA+ E+V Sbjct: 694 TTETKKAIDSK-ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVS 752 Query: 420 AE 425 A+ Sbjct: 753 AK 754 Score = 36.6 bits (83), Expect = 0.026 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 10/83 (12%) Frame = +3 Query: 207 KEMQGGDPNATTSEAKEEMDSRSV---------FVGNVDYACTPEEVQQHFNSCGTVNRV 359 K+ +G P A T +E + ++ F+ N+ Y E+ +Q F+ G + V Sbjct: 271 KKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEV 330 Query: 360 TI-LTDKFGQPKGFAYVEFVEAE 425 + + K GQ KGFA+V+F + E Sbjct: 331 HLPINTKTGQCKGFAHVQFEDPE 353
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 88
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 253 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/48 (37%), Positives = 27/48 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFV 88
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 38.9 bits (89), Expect = 0.005 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Frame = +3 Query: 237 TTSEAKEEMDSRSV------FVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 395 T+ E++EE + + F+ N+ Y T ++ ++ F+ G + V I D + GQ KG Sbjct: 313 TSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKG 372 Query: 396 FAYVEFVEAE 425 FAYV F A+ Sbjct: 373 FAYVLFKNAD 382 Score = 33.1 bits (74), Expect = 0.29 Identities = 17/65 (26%), Positives = 32/65 (49%) Frame = +3 Query: 222 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 401 G S K++ + + V N+ + T ++V + F+S G + V + +GFA Sbjct: 736 GTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFA 795 Query: 402 YVEFV 416 +VEF+ Sbjct: 796 FVEFL 800
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 38.5 bits (88), Expect = 0.007 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 413 +++G++ + ++Q++FN GTV R+ + + K G KG+AYVE+ Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 38.1 bits (87), Expect = 0.009 Identities = 20/48 (41%), Positives = 30/48 (62%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 R++FVGN++ T E + + F+ G V +V I DK G+ K FA+V F Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNF 57
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 38.1 bits (87), Expect = 0.009 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = +3 Query: 258 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 +M ++FVG +D E+++ F G+V V I+T + G KG+ +V F E Sbjct: 43 KMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSE 96
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 38.1 bits (87), Expect = 0.009 Identities = 18/60 (30%), Positives = 34/60 (56%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 EA ++ S +++V N+D + + E++++ F+ GTV ++ D G KG +V F E Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPE 369 Score = 34.3 bits (77), Expect = 0.13 Identities = 13/52 (25%), Positives = 28/52 (53%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 ++F+ N+D + + + F+S G + + D GQ KG+ +V++ E+ Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEES 176 Score = 32.3 bits (72), Expect = 0.49 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 12/84 (14%) Frame = +3 Query: 210 EMQGGDPNATTSEAKE-----------EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR 356 ++QG PN +T+ + + S++VG++D+ T ++ F GTV Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64 Query: 357 VTILTDKFGQPK-GFAYVEFVEAE 425 V + D + G+ YV F + Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQ 88
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 37.7 bits (86), Expect = 0.012 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 +F+ N+ Y T E+ +Q F+ G + V + D + GQ KGFAYV F + E Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPE 353 Score = 32.3 bits (72), Expect = 0.49 Identities = 17/59 (28%), Positives = 32/59 (54%) Frame = +3 Query: 240 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 TS+ ++ S + V N+ + T ++V + F+S G + V + +GFA+VEF+ Sbjct: 702 TSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFL 760
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 Q +V E++ DP+ + + +++FV V+Y T ++++ F G + R+ ++ Sbjct: 79 QQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 Query: 372 DK-FGQPKGFAYVEF 413 K G+P+G+A++E+ Sbjct: 137 SKRSGKPRGYAFIEY 151
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 37.7 bits (86), Expect = 0.012 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 243 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 SE ++ R +F+G + CT +++ F+S G + IL G +G A+V F Sbjct: 99 SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 155
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 37.7 bits (86), Expect = 0.012 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = +3 Query: 243 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 SE ++ R +F+G + CT +++ F+S G + IL G +G A+V F Sbjct: 99 SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTF 155
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 Q +V E++ DP+ + + +++FV V+Y T ++++ F G + R+ ++ Sbjct: 79 QQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 Query: 372 DK-FGQPKGFAYVEF 413 K G+P+G+A++E+ Sbjct: 137 SKRSGKPRGYAFIEY 151
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 37.7 bits (86), Expect = 0.012 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 +A+ + + SVFV NV Y T E + HF+ G+V + DK G KG A+V F Sbjct: 282 KAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAF 338
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 37.4 bits (85), Expect = 0.015 Identities = 19/75 (25%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 Q V E++ DP+ + + +++FV V+Y T ++++ F G + R+ ++ Sbjct: 79 QQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 Query: 372 DK-FGQPKGFAYVEF 413 +K G+P+G+A++E+ Sbjct: 137 NKRSGKPRGYAFIEY 151
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 37.4 bits (85), Expect = 0.015 Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 4/78 (5%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 Q V E++ DP+ + + +++FV V+Y T ++++ F G + R+ I+ Sbjct: 79 QQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVY 136 Query: 372 DK----FGQPKGFAYVEF 413 +K G+P+G+A++E+ Sbjct: 137 NKGSEGSGKPRGYAFIEY 154
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 37.4 bits (85), Expect = 0.015 Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 11/79 (13%) Frame = +3 Query: 222 GDPNATT---------SEAKEEM-DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 371 G P +TT +E +E++ DS +FV N+ Y + E++++ F++ G ++ + Sbjct: 374 GPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI 433 Query: 372 DKFGQ-PKGFAYVEFVEAE 425 D + PKGFA+V F+ E Sbjct: 434 DSLTKKPKGFAFVTFMFPE 452
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 37.4 bits (85), Expect = 0.015 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422 +VFV N+DY +++++ F+ G V R IL DK G+ +G V F ++ Sbjct: 203 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQS 252
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 37.4 bits (85), Expect = 0.015 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 VFVGN+ Y + +++ + FN G V ++ D + G KG+ + EF ++E Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 37.4 bits (85), Expect = 0.015 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = +3 Query: 219 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 395 G D + E R +F+G +DY T E ++ HF G + V ++ D + + +G Sbjct: 14 GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRG 73 Query: 396 FAYVEF 413 F ++ + Sbjct: 74 FGFITY 79 Score = 30.8 bits (68), Expect = 1.4 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + + ++ +F G + + I+ DK G+ +GFA+VEF Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 37.0 bits (84), Expect = 0.020 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422 +VFV N+DY +++++ F+ G V R IL DK G+ +G V F ++ Sbjct: 164 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS 213
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 37.0 bits (84), Expect = 0.020 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +3 Query: 237 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 T ++ + + +FVG+V T EE++ +F G V V ++ DK GQ +G +V++ Sbjct: 109 TGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168 Query: 414 VEAE 425 ++ Sbjct: 169 ATSK 172
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 37.0 bits (84), Expect = 0.020 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEA 428 E+ + +FVG + P+E ++ F+ GT+ ++ DK GQ +GF +V + A+A Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296 Score = 35.0 bits (79), Expect = 0.075 Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = +3 Query: 243 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEF 413 S+A +S +F+G +++ T + ++++F GTV + I+ D G+ +GF ++ F Sbjct: 150 SKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF 207
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 37.0 bits (84), Expect = 0.020 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422 +VFV N+DY +++++ F+ G V R IL DK G+ +G V F ++ Sbjct: 204 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQS 253
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 37.0 bits (84), Expect = 0.020 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 413 +++G++ A +++++F+ GTV R+ + + K G KG+AYVEF Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 36.6 bits (83), Expect = 0.026 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422 E E R +F+G +DY T + ++ HF G + V ++ D K + +GF ++ + ++ Sbjct: 16 EITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQS 75 Score = 32.7 bits (73), Expect = 0.37 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 8/62 (12%) Frame = +3 Query: 252 KEEMDS-------RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYV 407 ++E+DS + +FVG + E ++++F G + V I++DK G+ +GFA++ Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161 Query: 408 EF 413 EF Sbjct: 162 EF 163
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 36.6 bits (83), Expect = 0.026 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422 ++FV N+D+ +++++ F+ GTV R I DK G+ +G V F +A Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQA 283
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 36.6 bits (83), Expect = 0.026 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422 ++FV N+D+ +++++ F+ GTV R I DK G+ +G V F +A Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQA 274 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/51 (31%), Positives = 28/51 (54%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 +FV N+ + T +++++ F+ CG V I + G+ KG V F AE+ Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAES 565
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 36.6 bits (83), Expect = 0.026 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = +3 Query: 219 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKG 395 GGD A A + S+ + N+ Y TP ++++ F G + V I DK+ Q KG Sbjct: 6 GGDRRA----APDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61 Query: 396 FAYVEFVE 419 F +V F E Sbjct: 62 FGFVRFYE 69
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 36.2 bits (82), Expect = 0.034 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +F+ N+ Y T ++V++HF G + V + D G KGFA + + Sbjct: 310 LFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRY 355
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 36.2 bits (82), Expect = 0.034 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Frame = +3 Query: 243 SEAKEEMDS-RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFV 416 SEA E + R +F+G + + T E +++HF GT+ ++ D + +GF +V ++ Sbjct: 4 SEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYL 63 Query: 417 EAE 425 + Sbjct: 64 STD 66 Score = 34.3 bits (77), Expect = 0.13 Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEA 428 + +FVG + + ++++F G + + I+TD+ G+ +GFA+V F + ++ Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDS 158
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 36.2 bits (82), Expect = 0.034 Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 1/53 (1%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEA 428 S++VGN+ Y + ++ F G+V RV + TD+ G+ +GF +VE +EA+A Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVE-LEADA 53
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 35.8 bits (81), Expect = 0.044 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Score = 32.3 bits (72), Expect = 0.49 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 35.8 bits (81), Expect = 0.044 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Score = 32.3 bits (72), Expect = 0.49 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 35.8 bits (81), Expect = 0.044 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Score = 32.3 bits (72), Expect = 0.49 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 35.8 bits (81), Expect = 0.044 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Score = 32.3 bits (72), Expect = 0.49 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 35.8 bits (81), Expect = 0.044 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE 425 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE 65 Score = 32.3 bits (72), Expect = 0.49 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 35.8 bits (81), Expect = 0.044 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Frame = +3 Query: 57 QEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQG----- 221 QEI +A+D+ + G D + K + K E++G Sbjct: 341 QEIFENAKDIRIPTGKDGSNK-------GIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 393 Query: 222 ---GDPNATTSEAK-EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 G+ + + K E DS+ + V N+ Y+ T + +++ F ++ + G+ Sbjct: 394 DFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRA 449 Query: 390 KGFAYVEFVEAE 425 KGFA++EF AE Sbjct: 450 KGFAFIEFSSAE 461 Score = 35.8 bits (81), Expect = 0.044 Identities = 21/77 (27%), Positives = 35/77 (45%) Frame = +3 Query: 195 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 AK KEM P A ++ + S+F+GN++ +E++ + +TI Sbjct: 207 AKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDI 266 Query: 375 KFGQPKGFAYVEFVEAE 425 + G K F YV+F E Sbjct: 267 RIGNSKKFGYVDFSSEE 283 Score = 31.6 bits (70), Expect = 0.83 Identities = 21/70 (30%), Positives = 34/70 (48%) Frame = +3 Query: 216 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 395 QGG P + S+++FV + T E +++ F+ G+VN + G KG Sbjct: 486 QGGGPQGGGRGGSAQ--SKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKG 541 Query: 396 FAYVEFVEAE 425 F +V+F AE Sbjct: 542 FGFVDFSTAE 551
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 35.8 bits (81), Expect = 0.044 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEF 413 S+F+ NV A PE++++ F G + V I D + + P+GFAYV+F Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQF 58
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 35.4 bits (80), Expect = 0.058 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-VEAEA 428 +FVG + T ++ + F++ GTV I+ D+ G KG+ +V F E EA Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTFETEQEA 86
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 35.4 bits (80), Expect = 0.058 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Frame = +3 Query: 246 EAKEEMDSRSV-----FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYV 407 E +E ++S SV +VGN+ ++ T ++ + F GTV V I+ D+ + +GFA+V Sbjct: 101 EKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160 Query: 408 EFVEAE 425 E Sbjct: 161 TMGSVE 166
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 35.4 bits (80), Expect = 0.058 Identities = 17/56 (30%), Positives = 32/56 (57%) Frame = +3 Query: 261 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 +D RS+FVG +D T EE+ + F++ G + + ++ F FA++++ EA Sbjct: 343 IDKRSIFVGQLDKETTREELNRRFSTHGKIQDINLI---FKPTNIFAFIKYETEEA 395
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 35.4 bits (80), Expect = 0.058 Identities = 14/53 (26%), Positives = 32/53 (60%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 ++ +R++F+GN+D++ + E+++ F G + V I GQ +A+++F Sbjct: 5 DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKF 57
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 35.4 bits (80), Expect = 0.058 Identities = 29/139 (20%), Positives = 56/139 (40%) Frame = +3 Query: 9 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 188 A++ A EDEE + ++ D +D DD E D Sbjct: 228 AKNVAEDEDEEEDDEDEDDDDDDDD-------DDEDDEDEDDEEEEEEEEEEPVKEAPGK 280 Query: 189 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 + ++AK+ + E E + ++FVGN+++ + E++ + N + ++ Sbjct: 281 RKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 340 Query: 369 TDKFGQPKGFAYVEFVEAE 425 + G + F YV+F AE Sbjct: 341 DVRIGMTRKFGYVDFESAE 359 Score = 32.3 bits (72), Expect = 0.49 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +3 Query: 210 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 380 E+QG G PNA + +K ++FV + T E +++ F+ G+V R I+TD+ Sbjct: 557 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 607 Query: 381 GQPKGFAYVEFVEAE 425 G KGF +V+F E Sbjct: 608 GSSKGFGFVDFNSEE 622 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFE 535
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 35.4 bits (80), Expect = 0.058 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = +3 Query: 228 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAY 404 P + + + +FVG + E ++++F G V V +LTDK G+ +GFA+ Sbjct: 109 PRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAF 168 Query: 405 VEFVEAEA 428 VEF + +A Sbjct: 169 VEFDDYDA 176
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 35.4 bits (80), Expect = 0.058 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 +VF+ N+D A + + F++ G + + TD+ G KG+ +V F EA Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEA 142 Score = 31.6 bits (70), Expect = 0.83 Identities = 13/47 (27%), Positives = 27/47 (57%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +++V N+D + ++ F+ G + ++TD+ G+ KGF +V F Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCF 334
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 35.4 bits (80), Expect = 0.058 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 S +FV N+ Y E++ F+ G + + + D +F KGFAYV++ + +A Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDA 348
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 35.4 bits (80), Expect = 0.058 Identities = 14/53 (26%), Positives = 32/53 (60%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 ++ +R++F+GN+D++ + E+++ F G + V I GQ +A+++F Sbjct: 5 DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKF 57
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 35.4 bits (80), Expect = 0.058 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 ++F+ N+ E ++ F++ GT+ I+TD+ G+ KGF +V + E Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPE 415 Score = 34.7 bits (78), Expect = 0.098 Identities = 13/51 (25%), Positives = 28/51 (54%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N+D T +E F G + ++++ D+ +P+GF +V + E Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHE 312 Score = 34.3 bits (77), Expect = 0.13 Identities = 15/57 (26%), Positives = 30/57 (52%) Frame = +3 Query: 258 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 +M + +VF+ N+D A + + F++ G + + D+ G KG+ +V F E+ Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVES 220 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAE 425 S S++VG +D + T + + FNS G V + + D + G+AYV F E Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNME 132
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 35.0 bits (79), Expect = 0.075 Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 428 SR V++G++ Y T E++ ++ G V + ++ D + G+ KG+A++EF + E+ Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLES 71
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 35.0 bits (79), Expect = 0.075 Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEA 422 E ++ +S +FV N+ Y T E++++ F+ G ++ + D + PKGFA++ F+ Sbjct: 394 EEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453 Query: 423 E 425 E Sbjct: 454 E 454
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 35.0 bits (79), Expect = 0.075 Identities = 15/51 (29%), Positives = 30/51 (58%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +VF+ N+D + + + + F+S GT+ + D G+ KG+ +V+F + E Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEE 183 Score = 33.9 bits (76), Expect = 0.17 Identities = 17/64 (26%), Positives = 31/64 (48%) Frame = +3 Query: 234 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 A +EA + + S++VG++D + + FN V+ + + D + G+AYV F Sbjct: 33 AAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNF 92 Query: 414 VEAE 425 E Sbjct: 93 ANPE 96 Score = 31.6 bits (70), Expect = 0.83 Identities = 12/57 (21%), Positives = 31/57 (54%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 E++ ++++ N+D + E++++ F+ G V ++ + G +GF +V + E Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPE 379
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAE 425 +FVG +++ + ++ HF+S G ++ V ++ D+ Q +GF ++ F E Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE 58
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 34.7 bits (78), Expect = 0.098 Identities = 27/139 (19%), Positives = 58/139 (41%) Frame = +3 Query: 9 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 188 A++ A EDEE + ++ D +D + +D + E + Sbjct: 229 AKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEAPGKR-------- 280 Query: 189 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 + ++AK+ + E E + ++FVGN+++ + E++ + N + ++ Sbjct: 281 -KKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 339 Query: 369 TDKFGQPKGFAYVEFVEAE 425 + G + F YV+F AE Sbjct: 340 DVRIGMTRKFGYVDFESAE 358 Score = 32.3 bits (72), Expect = 0.49 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +3 Query: 210 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 380 E+QG G PNA + +K ++FV + T E +++ F+ G+V R I+TD+ Sbjct: 556 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 606 Query: 381 GQPKGFAYVEFVEAE 425 G KGF +V+F E Sbjct: 607 GSSKGFGFVDFNSEE 621 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFE 534
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 34.7 bits (78), Expect = 0.098 Identities = 30/139 (21%), Positives = 54/139 (38%) Frame = +3 Query: 9 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 188 A++ A EDEE D ED + DD E D Sbjct: 228 AKNVAEDEDEEE---------DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGK 278 Query: 189 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 + ++AK+ + E E + ++FVGN+++ + E++ + N + ++ Sbjct: 279 RKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 338 Query: 369 TDKFGQPKGFAYVEFVEAE 425 + G + F YV+F AE Sbjct: 339 DVRIGMTRKFGYVDFESAE 357 Score = 32.3 bits (72), Expect = 0.49 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Frame = +3 Query: 210 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 380 E+QG G PNA + +K ++FV + T E +++ F+ G+V R I+TD+ Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 605 Query: 381 GQPKGFAYVEFVEAE 425 G KGF +V+F E Sbjct: 606 GSSKGFGFVDFNSEE 620 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFE 533
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEF 413 + KE R +F+G + + T + +++HF GT+ ++ D + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 34.7 bits (78), Expect = 0.098 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++++F G ++ + I+TDK G+ +GFA+V F Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTF 148 Score = 32.0 bits (71), Expect = 0.64 Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEF 413 +E+ R +F+G + + T E ++ ++ GT+ ++ D + +GF +V F Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTF 57
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +3 Query: 222 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 398 G P + S + D +F+G + + +P+ ++ +F+ G + ++ D + +GF Sbjct: 5 GSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64 Query: 399 AYVEFVE 419 +V F + Sbjct: 65 GFVTFAD 71 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 ++ +FVG + E+V+Q+F G V ++ DK + +GF +V F Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAE 425 +FVG +++ + ++ HF+S G ++ V ++ D+ Q +GF ++ F E Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE 58
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 34.7 bits (78), Expect = 0.098 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 9/72 (12%) Frame = +3 Query: 240 TSEAKEEMD--------SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 392 +S +EE+D S +FV N+ Y + +++ F+ G + + + D + K Sbjct: 283 SSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSK 342 Query: 393 GFAYVEFVEAEA 428 GFAYV+++E +A Sbjct: 343 GFAYVQYIEPDA 354
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEF 413 + KE R +F+G + + T + +++HF GT+ ++ D + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 34.7 bits (78), Expect = 0.098 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEF 413 + KE R +F+G + + T + +++HF GT+ ++ D + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTY 83
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 34.3 bits (77), Expect = 0.13 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEA 428 + +FVG + ++ +HF+ GTV + I+ DK G+ +GF +V F +A Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDA 151
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 34.3 bits (77), Expect = 0.13 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = +3 Query: 219 GGDPNATTSEAKEEMD---SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 G P E E D +R++F+GN+D T ++++ F+ G + V I GQ Sbjct: 354 GAAPFREVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQT 413 Query: 390 KGFAYVEF 413 + +++F Sbjct: 414 STYGFLKF 421
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 33.9 bits (76), Expect = 0.17 Identities = 15/51 (29%), Positives = 29/51 (56%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 ++FV N+D + E++++ F GT+ ++ + G+ KGF +V F E Sbjct: 322 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPE 372 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 S ++F+ N+ + + F+ G + I TD+ G+ KGF +V F E A Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGA 177
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 33.9 bits (76), Expect = 0.17 Identities = 14/52 (26%), Positives = 31/52 (59%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 ++F+ N+D + + + + F+S GT+ + D G+ KG+ +V+F + E+ Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEES 188 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/57 (21%), Positives = 30/57 (52%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 E+ ++++ N+D + E++++ F+ G V ++ + G +GF +V + E Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 33.9 bits (76), Expect = 0.17 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 ++ +FVG + T E+V+Q+F G V+ ++ DK + +GF +V F Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 33.9 bits (76), Expect = 0.17 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +S+++ + N+ Y+ T E +++ F + + + G+PKG+A++EF E Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFE 534 Score = 28.5 bits (62), Expect = 7.1 Identities = 28/139 (20%), Positives = 53/139 (38%) Frame = +3 Query: 9 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 188 A+ A ED+E E E D +D E DD + E Sbjct: 235 AKSVAEEEDDEEEDEDDE---DEDDEEEDDEDDDEEEEEE-----------EPVKAAPGK 280 Query: 189 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 368 + ++ K+ + + E E ++F+GN++ + E++ + N + ++ Sbjct: 281 RKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV 340 Query: 369 TDKFGQPKGFAYVEFVEAE 425 + G + F YV+F AE Sbjct: 341 DVRTGTNRKFGYVDFESAE 359 Score = 28.1 bits (61), Expect = 9.2 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 425 S+++FV + T E +++ F G+V R I+TD+ G KGF +V+F E Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEE 617
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 33.5 bits (75), Expect = 0.22 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 13/70 (18%) Frame = +3 Query: 258 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV-TILTDK---------FGQPKG---F 398 E +S +++VGN+D + EE+ +HF+ G V + L D F PK + Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72 Query: 399 AYVEFVEAEA 428 +V+FV AE+ Sbjct: 73 GFVKFVNAES 82
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 33.5 bits (75), Expect = 0.22 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEF 413 + D + V N+ +E++ F G V R+ I DK G PKGFA+V F Sbjct: 170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTF 224
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 33.5 bits (75), Expect = 0.22 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Frame = +3 Query: 216 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR-VTILTDKF-GQP 389 QG + E +EE S V + + A T ++++ S G R V ++ +K GQ Sbjct: 111 QGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS 170 Query: 390 KGFAYVEF 413 +GFA+VEF Sbjct: 171 RGFAFVEF 178
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 33.5 bits (75), Expect = 0.22 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Frame = +3 Query: 228 PNATTSEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 398 P T E E +++ +F+ N+ Y E+ ++ F+ G + V + D + GQ KGF Sbjct: 329 PQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGF 388 Query: 399 AYVEFVEAE 425 AYV F +++ Sbjct: 389 AYVLFKDSK 397 Score = 33.1 bits (74), Expect = 0.29 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = +3 Query: 243 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 ++ K S + V N+ + T ++V + FNS G + V + +GFA+VEF+ Sbjct: 754 TKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFL 811
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 33.5 bits (75), Expect = 0.22 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEF 413 E KE R +F+G + + T + +++HF G + ++ D + + +GF +V + Sbjct: 19 EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTY 75
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 33.5 bits (75), Expect = 0.22 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Frame = +3 Query: 216 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 392 QG DP KE R +F+G + + T + +++HF G + ++ D + + + Sbjct: 16 QGHDP-------KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSR 68 Query: 393 GFAYVEF 413 GF +V + Sbjct: 69 GFGFVTY 75
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 33.5 bits (75), Expect = 0.22 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Frame = +3 Query: 249 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 425 ++++ +FVG + Y T ++++F G + ++TD+ G+ +G+ +V + Sbjct: 25 SRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 84 Query: 426 A 428 A Sbjct: 85 A 85
>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12| Length = 462 Score = 33.5 bits (75), Expect = 0.22 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEF 413 + R++FVGN+D+ E + ++FNS V V ++ D K KGFA V+F Sbjct: 264 NKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQF 316
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 33.5 bits (75), Expect = 0.22 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +AK + + N+ + C+ ++++ F GTV V I G+ +GFA+V+F Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQF 160 Score = 29.3 bits (64), Expect = 4.1 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEF 413 ++FVG + + +++++ F+ G V + ++T+K + +GF YV F Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 33.1 bits (74), Expect = 0.29 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 258 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 E+ +FVG + T E+++HF V V ++ GQ KG+ ++ F Sbjct: 63 ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITF 114
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 33.1 bits (74), Expect = 0.29 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRS-----VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 +M P AK+ D+ S +F+GN+ + + + + F G V V I T Sbjct: 242 DMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTH 301 Query: 375 -KFGQPKGFAYVEFVEAE 425 + QPKGF YV+F E Sbjct: 302 PETEQPKGFGYVQFSNME 319
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 33.1 bits (74), Expect = 0.29 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Frame = +3 Query: 207 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 383 KE+Q G + S E D+ +++GN++ T ++ F+ G V + D+ G Sbjct: 10 KELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69 Query: 384 QPKGFAYVEF 413 + +GFAY+++ Sbjct: 70 ESQGFAYLKY 79
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 33.1 bits (74), Expect = 0.29 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEA 428 +FVG + Y T ++++F G + ++TD+ G+ +G+ +V + A Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 33.1 bits (74), Expect = 0.29 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEF 413 + R++FVGN+D+ E + ++FNS V V I+ D K KGFA V+F Sbjct: 263 NKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQF 315
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 32.7 bits (73), Expect = 0.37 Identities = 18/52 (34%), Positives = 30/52 (57%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422 SR+V+VGN+ EV+ F+ G V ++ + +P G+A+VEF +A Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDA 55
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 32.7 bits (73), Expect = 0.37 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +3 Query: 207 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 383 ++++ GD E + +FVGN+ ++ + + F G V V ++ DK G Sbjct: 68 EDVEDGDDGV--EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTG 125 Query: 384 QPKGFAYVEFVEAE 425 + +GF +V E Sbjct: 126 RSRGFGFVTMSSKE 139
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 405 VEFVEAEA 428 V + EA Sbjct: 244 VRYETHEA 251
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 405 VEFVEAEA 428 V + EA Sbjct: 244 VRYETHEA 251
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 405 VEFVEAEA 428 V + EA Sbjct: 244 VRYETHEA 251
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 405 VEFVEAEA 428 V + EA Sbjct: 244 VRYETHEA 251
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 405 VEFVEAEA 428 V + EA Sbjct: 244 VRYETHEA 251
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 32.7 bits (73), Expect = 0.37 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 404 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 405 VEFVEAEA 428 V + EA Sbjct: 244 VRYETHEA 251
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 32.3 bits (72), Expect = 0.49 Identities = 16/55 (29%), Positives = 31/55 (56%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 ++R ++VGN+ E++ +HF G V V IL + + A+V+FV+ ++ Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKS 58
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 32.3 bits (72), Expect = 0.49 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 401 D NA + +DS + +F+G + T ++V++ S G + ++ D G KG+A Sbjct: 266 DMNARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 325 Query: 402 YVEFVE 419 + E+++ Sbjct: 326 FAEYLD 331 Score = 29.6 bits (65), Expect = 3.2 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEF 413 SR ++VGN+ + C E + FN C IL + K FA++EF Sbjct: 174 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEF 228
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 32.3 bits (72), Expect = 0.49 Identities = 16/55 (29%), Positives = 31/55 (56%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 ++R ++VGN+ E++ +HF G V V IL + + A+V+FV+ ++ Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKS 58
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 32.3 bits (72), Expect = 0.49 Identities = 13/50 (26%), Positives = 29/50 (58%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +FVGN+ E + Q F+ ++ + ++ D+ G+ +GF +V F +++ Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSD 81
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.3 bits (72), Expect = 0.49 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E +++ F G V ++TD+ G+ KGF +V F E Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPE 344
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 32.3 bits (72), Expect = 0.49 Identities = 15/51 (29%), Positives = 26/51 (50%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E +++ F G V ++TD+ G+ KGF +V F E Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPE 344
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 32.0 bits (71), Expect = 0.64 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEF 413 SR ++VGN+ + C E + FN CG IL + K FA++EF Sbjct: 183 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEF 237 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/51 (23%), Positives = 28/51 (54%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 + +F+G + T ++V++ S G + ++ D G KG+A+ E+++ Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLD 340
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 32.0 bits (71), Expect = 0.64 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = +3 Query: 210 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 380 E+QG G PNA + +K ++FV + T E +++ F G+V R I+TD+ Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 605 Query: 381 GQPKGFAYVEFVEAE 425 G KGF +V+F E Sbjct: 606 GSSKGFGFVDFNSEE 620 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFE 533
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 32.0 bits (71), Expect = 0.64 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%) Frame = +3 Query: 210 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 380 E+QG G PNA + +K ++FV + T E +++ F G+V R I+TD+ Sbjct: 558 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 608 Query: 381 GQPKGFAYVEFVEAE 425 G KGF +V+F E Sbjct: 609 GSSKGFGFVDFNSEE 623 Score = 32.0 bits (71), Expect = 0.64 Identities = 14/54 (25%), Positives = 30/54 (55%) Frame = +3 Query: 264 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +S+++ + N+ Y+ T E +Q+ F + + + G+ KG+A++EF E Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFE 536
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 32.0 bits (71), Expect = 0.64 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEF 413 +V+VGN+D T E++ + F V R+ DK Q +G+A++EF Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEF 57
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 32.0 bits (71), Expect = 0.64 Identities = 15/55 (27%), Positives = 27/55 (49%) Frame = +3 Query: 249 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 A E+ + V N+ + T E+V+ F G + V + D + KGF Y+++ Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQY 387
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 32.0 bits (71), Expect = 0.64 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 201 VAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 377 VA+E + G P A + K +FVG + ++ +F G ++ + I+TD+ Sbjct: 85 VARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136 Query: 378 FGQPKGFAYVEF 413 G+ +GF +V F Sbjct: 137 SGKKRGFGFVTF 148
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 32.0 bits (71), Expect = 0.64 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +3 Query: 201 VAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 377 VA+E + G P A + K +FVG + ++ +F G ++ + I+TD+ Sbjct: 97 VARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 148 Query: 378 FGQPKGFAYVEF 413 G+ +GF +V F Sbjct: 149 SGKKRGFGFVTF 160
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 32.0 bits (71), Expect = 0.64 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = +3 Query: 255 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-----PKGFAYVEFVE 419 ++ D VFVG + + E++ F + GTV +VTI + + P G A+V F Sbjct: 39 QQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98 Query: 420 AE 425 E Sbjct: 99 QE 100
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 31.6 bits (70), Expect = 0.83 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Frame = +3 Query: 207 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 383 ++++ GD E + +FVGN+ ++ + + F G V V ++ DK G Sbjct: 68 EDVEDGDEGV--EEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTG 125 Query: 384 QPKGFAYVEFVEAE 425 + +GF +V E Sbjct: 126 RSRGFGFVTMSSKE 139
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E ++ F G V ++TD+ G+ KGF +V F E Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPE 344
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 31.6 bits (70), Expect = 0.83 Identities = 14/51 (27%), Positives = 25/51 (49%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E +++ F G V ++TD G+ +GF +V F E Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E +++ F G V ++TD G+ KGF +V F E Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEF 413 +R ++VGN+ + T E + FN+ + +T +L + Q K FA++EF Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEF 202
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 31.6 bits (70), Expect = 0.83 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEF 413 +R ++VGN+ + T E + FN+ + +T +L + Q K FA++EF Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEF 202
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 31.6 bits (70), Expect = 0.83 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +3 Query: 270 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 + +FVG + ++++F G + I+TDK G+ +GF +V F Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E ++ F G V ++TD+ G+ KGF +V F E Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPE 344
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 31.6 bits (70), Expect = 0.83 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +V++ N E ++ F G V ++TD+ G+ KGF +V F E Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242 Score = 29.3 bits (64), Expect = 4.1 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPE 344
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 31.2 bits (69), Expect = 1.1 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Frame = +3 Query: 207 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 383 KE+ T + +E++ V+V ++ ++ +F+ GTV R + K G Sbjct: 24 KEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTG 83 Query: 384 QPKGFAYVEF 413 KG+A+VEF Sbjct: 84 NSKGYAFVEF 93
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEF 197
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF Sbjct: 152 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEF 200
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEF 195
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEF 195
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/50 (30%), Positives = 28/50 (56%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 416 SR+VF+GN+ + +E+++ F G + + IL+ K A+V F+ Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS-----KKNIAFVHFL 342
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 ++ +FVG + E+V+Q+F G V ++ DK + +GF +V F Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 279 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 FVG + +A E ++Q F + G V ++TD+ G+ +GF +V F Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTF 56
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = +3 Query: 231 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV-TILTD-KFGQPKGFAY 404 N ++ K ++FVGN+D + + F++ G + +V I+ D G KGFA+ Sbjct: 87 NKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAF 146 Query: 405 VEFVEAEA 428 + F EA Sbjct: 147 INFASFEA 154
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Frame = +3 Query: 222 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 G+ + K+E +R +++V N+D + +++ F+ GT+ ++T+ G Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHS 332 Query: 390 KGFAYVEFVEAE 425 KGF +V F E Sbjct: 333 KGFGFVCFSSPE 344
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 30.4 bits (67), Expect = 1.9 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Frame = +3 Query: 222 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 G+ + K+E +R +++V N+D + +++ F+ GT+ ++T+ G Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHS 332 Query: 390 KGFAYVEFVEAE 425 KGF +V F E Sbjct: 333 KGFGFVCFSSPE 344 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/52 (25%), Positives = 29/52 (55%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 428 +VF+ N+D + + + F++ G + ++ D++G +G+ +V F EA Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEA 150
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 + V N+D+ + ++Q+ F GT+ + + D+ G+ G A V F Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 152
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEF 413 S+FV NV E++++ F G + V + D + + P+GFAYV+F Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 30.4 bits (67), Expect = 1.9 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEF 413 S+FV NV E++++ F G + V + D + + P+GFAYV+F Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQF 58
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +3 Query: 279 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 FVG + +A + E ++ F S G + ++TD+ G+ +GF +V F Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTF 56
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 30.4 bits (67), Expect = 1.9 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEF 413 ++FVG + + E++++ F+ G V + ++T+K + +GF YV F Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTF 51 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/56 (25%), Positives = 28/56 (50%) Frame = +3 Query: 246 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +AK + + N+ + C+ ++++ F G V V I G+ +GF +V+F Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQF 160
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 276 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 +FVGNVD A TPEE+ F GTV ++ K FA+V E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRE 44
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 276 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 +FVGNVD A TPEE+ F GTV ++ K FA+V E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRE 44
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 276 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 +FVGNVD A TPEE+ F GTV ++ K FA+V E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRE 44
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 374 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 113 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 276 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 419 +FVGNVD A TPEE+ F GTV ++ K FA+V E Sbjct: 3 IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRE 44
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 30.4 bits (67), Expect = 1.9 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 + V N+D+ + ++Q+ F GT+ + + D+ G+ G A V F Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHF 151
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 30.0 bits (66), Expect = 2.4 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 + V N+D+ + ++Q+ F GT+ + + D+ G+ G A V F Sbjct: 77 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHF 122
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVN---RVTILTDKFGQPKGFAYVE 410 V V + ++C+ +EVQ+ F+ C N + + + G+P G A+VE Sbjct: 12 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 59
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVN---RVTILTDKFGQPKGFAYVE 410 V V + ++C+ +EVQ+ F+ C N + + + G+P G A+VE Sbjct: 12 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE 59
>NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Multicopy| suppressor of sporulation protein msa2) Length = 529 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 SR++++GN D + T E +++ F G + V F + K A+V F Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYV-----NFFREKNCAFVNF 456
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVN---RVTILTDKFGQPKGFAYVE 410 V V + ++C+ EEV + F+ C N V + + G+P G A+VE Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVE 60
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +3 Query: 219 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 395 GG P + ++ +FVG + +E+ F G + + ++ D G +G Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114 Query: 396 FAYVEFVEAEA 428 +A+V F EA Sbjct: 115 YAFVTFCTKEA 125
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 29.3 bits (64), Expect = 4.1 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +3 Query: 219 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 395 GG P + ++ +FVG + +E+ F G + + ++ D G +G Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 396 FAYVEFVEAEA 428 +A+V F EA Sbjct: 205 YAFVTFCTKEA 215
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Frame = +3 Query: 219 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 395 GG P + ++ +FVG + +E+ F G + + ++ D G +G Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 396 FAYVEFVEAEA 428 +A+V F EA Sbjct: 205 YAFVTFCTKEA 215
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEVQQHFN------SCGTVNRVTILTDKFGQPKGFAYVEF 413 +R ++VGN+ + T EE+ + FN +L + K FA++EF Sbjct: 92 ARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEF 146
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 28.9 bits (63), Expect = 5.4 Identities = 10/46 (21%), Positives = 26/46 (56%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 413 +F+G ++ + ++ F G ++ V ++ D+ + +GFA++ F Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITF 55
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 28.9 bits (63), Expect = 5.4 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +3 Query: 243 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYV 407 +E E + +FVGN+ Y + + F GTV ++ ++ Q +GF +V Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFV 196
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 28.9 bits (63), Expect = 5.4 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 210 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 389 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112 Query: 390 KGFAYVEFVEAE 425 +A+V AE Sbjct: 113 --YAFVHMERAE 122
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 28.9 bits (63), Expect = 5.4 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +3 Query: 225 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA- 401 DPN TT VF+G + T +E++ +F GT+ V I G+ GF Sbjct: 309 DPNNTT-----------VFIGGLSSLVTEDELRAYFQPFGTIVYVKI---PVGKCCGFVQ 354 Query: 402 YVEFVEAEA 428 YV+ + AEA Sbjct: 355 YVDRLSAEA 363
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/51 (27%), Positives = 27/51 (52%) Frame = +3 Query: 273 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 425 +++V N+D + +++ F GT+ ++T+ G KGF +V F E Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPE 344
>G3BP_SCHPO (O94260) Putative G3BP-like protein| Length = 434 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/70 (28%), Positives = 35/70 (50%) Frame = +3 Query: 216 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 395 Q P A +++ E +++ SVFV N+ + ++ + G V + +F + KG Sbjct: 298 QTQQPTAPYTQSNELLET-SVFVKNIPPETSDVSLKSAMSIFGPVKAI-----EFARRKG 351 Query: 396 FAYVEFVEAE 425 AYV+FV E Sbjct: 352 TAYVDFVNHE 361
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 28.5 bits (62), Expect = 7.1 Identities = 19/69 (27%), Positives = 33/69 (47%) Frame = +3 Query: 213 MQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK 392 + G N S+ K + ++ + VGN+ +CT +E++ F G V I+ D Sbjct: 60 LNGMAMNVEMSKGKPKTSTK-LHVGNISSSCTNQELRAKFEEYGPVVECDIVKD-----Y 113 Query: 393 GFAYVEFVE 419 F ++E VE Sbjct: 114 AFVHMERVE 122
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 28.5 bits (62), Expect = 7.1 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +3 Query: 252 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 413 KE+++ V++G++ + + + G ++R + K G KG+A+VEF Sbjct: 41 KEKLNRGVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEF 95
>MODU_DROME (P13469) DNA-binding protein modulo| Length = 542 Score = 28.5 bits (62), Expect = 7.1 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = +3 Query: 192 QAKVAKEMQGGDPNATTSEA--KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 365 QAK K + GD + S+ KEE + R+V VG + T ++++ F V VTI Sbjct: 231 QAK-PKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTI 289 Query: 366 LTDKFGQPKGFAYVEFVE 419 +++ P+ F + V+ Sbjct: 290 SSNRL-MPRAFVRLASVD 306
>DMSA_ECOLI (P18775) Anaerobic dimethyl sulfoxide reductase chain A precursor| (EC 1.8.99.-) (DMSO reductase) Length = 814 Score = 28.5 bits (62), Expect = 7.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = -1 Query: 371 SQDSHSVDGSARIKMLLHFFWSACIVNISNKNRTRIHL 258 S+ +H+VD + K WSAC VN ++ R+H+ Sbjct: 40 SRIAHAVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHV 77
>EST1A_HUMAN (Q86US8) Telomerase-binding protein EST1A (Ever shorter telomeres 1A)| (Telomerase subunit EST1A) (EST1-like protein A) (hSmg5/7a) Length = 1419 Score = 28.1 bits (61), Expect = 9.2 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 3 LGAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDD 110 +G+Q +EDEE +V ++ D+E G+GG+D Sbjct: 1167 MGSQEGTRLEDEEEDVVIEDFEEDSE--AEGSGGED 1200
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 28.1 bits (61), Expect = 9.2 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = -2 Query: 373 SVRIVTRLTVPQELKCCCTSSGVHA*STFPT---KTERESISSFASDVVALGSPPCIS 209 SV +V L +PQ +K +A S+ P +T R + S + V L SPPC S Sbjct: 1693 SVAVVGPLHIPQNIKFSSAPVPPNALSSSPAPNIQTGRPLVLSSRATPVQLPSPPCTS 1750
>CWC2_ASPFU (Q4WU07) Pre-mRNA-splicing factor cwc2| Length = 414 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%) Frame = +3 Query: 267 SRSVFVGNVDYACTPEEV-QQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEA 428 +R+++VG + EEV +HF G ++R+ +LT +G A+V + EA A Sbjct: 191 NRTLYVGRIHVTDDIEEVVSRHFAEWGQIDRIRVLTS-----RGVAFVTYTNEANA 241
>DYNA_XENLA (Q6PCJ1) Dynactin-1| Length = 1232 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +3 Query: 228 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQH 329 P+ +AKEE +V++G V +C P + Q H Sbjct: 1181 PSTDFIKAKEEKKEDTVYIGKVTLSCQPGQGQIH 1214
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 28.1 bits (61), Expect = 9.2 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 276 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ--PKGFAYVEFVEAE 425 V +G + T + + + F++ G + + + D++ KG+AYVEF E Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPE 191 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,423,813 Number of Sequences: 219361 Number of extensions: 549920 Number of successful extensions: 2294 Number of sequences better than 10.0: 223 Number of HSP's better than 10.0 without gapping: 2154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2272 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
