| Clone Name | basd19f08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.010 Identities = 52/62 (83%) Strand = Plus / Minus Query: 24 tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83 |||||||||| ||| ||| || |||||||||| ||| || |||| ||||||||||||| Sbjct: 23660950 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 23660891 Query: 84 tc 85 || Sbjct: 23660890 tc 23660889
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 48.1 bits (24), Expect = 0.010 Identities = 52/62 (83%) Strand = Plus / Minus Query: 24 tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83 |||||||||| ||| ||| || |||||||||| ||| || |||| ||||||||||||| Sbjct: 9026 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 8967 Query: 84 tc 85 || Sbjct: 8966 tc 8965
>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481H08 Length = 146841 Score = 48.1 bits (24), Expect = 0.010 Identities = 52/62 (83%) Strand = Plus / Minus Query: 24 tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83 |||||||||| ||| ||| || |||||||||| ||| || |||| ||||||||||||| Sbjct: 141914 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 141855 Query: 84 tc 85 || Sbjct: 141854 tc 141853
>dbj|AK102270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088P20, full insert sequence Length = 1916 Score = 48.1 bits (24), Expect = 0.010 Identities = 52/62 (83%) Strand = Plus / Plus Query: 24 tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83 |||||||||| ||| ||| || |||||||||| ||| || |||| ||||||||||||| Sbjct: 185 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 244 Query: 84 tc 85 || Sbjct: 245 tc 246
>gb|DQ248963.1| Oryza sativa (indica cultivar-group) serine/threonine kinase mRNA, complete cds Length = 1362 Score = 48.1 bits (24), Expect = 0.010 Identities = 52/62 (83%) Strand = Plus / Plus Query: 24 tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83 |||||||||| ||| ||| || |||||||||| ||| || |||| ||||||||||||| Sbjct: 86 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 145 Query: 84 tc 85 || Sbjct: 146 tc 147
>gb|AC098475.2| Homo sapiens chromosome 3 clone RP11-611H7, complete sequence Length = 152945 Score = 42.1 bits (21), Expect = 0.62 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 caacaggnaagccgccccacaaca 145 ||||||| |||||||||||||||| Sbjct: 125269 caacagggaagccgccccacaaca 125246
>emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on chromosome 9 Contains the 3' end of the PAX5 gene for paired box gene 5 (B-cell lineage specific activator protein) (BSAP), complete sequence Length = 125110 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 acacaggctcccccgttgcc 73 |||||||||||||||||||| Sbjct: 106527 acacaggctcccccgttgcc 106546
>dbj|AB205145.1| Epichloe festucae EF100, EF101, EF102, perA, EF103, EF104, EF105, EF106, EF107, EF108, EF109, genes for hypothetical proteins, non-ribosomal peptide synthetase, complete cds Length = 37429 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 71 gccatgaaggtgctcagcatggcc 94 |||||||||||| ||||||||||| Sbjct: 21407 gccatgaaggtggtcagcatggcc 21430
>gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome 18, complete sequence Length = 208705 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctgtatgaggtgggggttgg 23 |||||||||||||||||||| Sbjct: 134798 ctgtatgaggtgggggttgg 134779
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 159 caaatccaaatcaaagtcc 177 ||||||||||||||||||| Sbjct: 235920 caaatccaaatcaaagtcc 235902
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 105 tcaaccgtcgaattttgca 123 ||||||||||||||||||| Sbjct: 1578831 tcaaccgtcgaattttgca 1578813
>gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OABb-43A1, complete sequence Length = 180865 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 atgaaggtgctcagcatgg 92 ||||||||||||||||||| Sbjct: 2013 atgaaggtgctcagcatgg 1995
>emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in linkage group 18, complete sequence Length = 100610 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 gccatgaaggtgctcagca 89 ||||||||||||||||||| Sbjct: 39860 gccatgaaggtgctcagca 39842
>emb|BX061330.1|CNS09JHI Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC42AD01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 854 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 gaaggtgctcagcatggcc 94 ||||||||||||||||||| Sbjct: 131 gaaggtgctcagcatggcc 149
>emb|BX053060.1|CNS09D3S Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC30CA06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 407 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 gaaggtgctcagcatggcc 94 ||||||||||||||||||| Sbjct: 145 gaaggtgctcagcatggcc 163
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 19 gttggtcgccaaggtgaag 37 ||||||||||||||||||| Sbjct: 87997 gttggtcgccaaggtgaag 88015
>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13, complete sequence Length = 258636 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 168 atcaaagtccttgtgctcc 186 ||||||||||||||||||| Sbjct: 35226 atcaaagtccttgtgctcc 35244
>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence Length = 180483 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tcagcatggccactactat 102 ||||||||||||||||||| Sbjct: 149974 tcagcatggccactactat 149956
>gb|AF295804.1| Danio rerio rho coiled-coil associated kinase alpha mRNA, complete cds Length = 5447 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 gccatgaaggtgctcagca 89 ||||||||||||||||||| Sbjct: 410 gccatgaaggtgctcagca 428
>gb|AF403295.1|AF403295 Allium cepa clone ATP1-1 ATP-sulfurylase mRNA, complete cds Length = 1585 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 gaaggtgctcagcatggcc 94 ||||||||||||||||||| Sbjct: 1111 gaaggtgctcagcatggcc 1129
>ref|XM_691785.1| PREDICTED: Danio rerio similar to rho coiled-coil associated kinase alpha (LOC573683), mRNA Length = 2502 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 gccatgaaggtgctcagca 89 ||||||||||||||||||| Sbjct: 454 gccatgaaggtgctcagca 472
>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence Length = 165675 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 tcagcatggccactactat 102 ||||||||||||||||||| Sbjct: 24460 tcagcatggccactactat 24442
>gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, complete sequence Length = 139939 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 tcagcatggccactactat 102 ||||||||||||||||||| Sbjct: 45492 tcagcatggccactactat 45510
>gb|AF212154.1|AF212154 Allium cepa ATP-sulfurylase mRNA, complete cds Length = 1635 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 gaaggtgctcagcatggcc 94 ||||||||||||||||||| Sbjct: 1122 gaaggtgctcagcatggcc 1140
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 catgaaggtgctcagcatg 91 ||||||||||||||||||| Sbjct: 26488990 catgaaggtgctcagcatg 26489008
>ref|NM_174863.2| Danio rerio rho-associated, coiled-coil containing protein kinase 2 (rock2), mRNA Length = 5447 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 gccatgaaggtgctcagca 89 ||||||||||||||||||| Sbjct: 410 gccatgaaggtgctcagca 428
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 catgaaggtgctcagcatg 91 ||||||||||||||||||| Sbjct: 26417159 catgaaggtgctcagcatg 26417177
>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146366 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 catgaaggtgctcagcatg 91 ||||||||||||||||||| Sbjct: 53086 catgaaggtgctcagcatg 53068
>gb|CP000218.1| Drosophila melanogaster genomic scaffold 211000022280780 Length = 166742 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 71 gccatgaaggtgctcagca 89 ||||||||||||||||||| Sbjct: 121255 gccatgaaggtgctcagca 121237
>gb|CP000203.1| Drosophila melanogaster genomic scaffold 211000022280760 Length = 90124 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 gccatgaaggtgctcagca 89 ||||||||||||||||||| Sbjct: 21519 gccatgaaggtgctcagca 21537 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,249,266 Number of Sequences: 3902068 Number of extensions: 1249266 Number of successful extensions: 81801 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81675 Number of HSP's gapped (non-prelim): 126 length of query: 196 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 174 effective length of database: 17,147,199,772 effective search space: 2983612760328 effective search space used: 2983612760328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)