ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd19f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
2dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
3dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
4dbj|AK102270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.010
5gb|DQ248963.1| Oryza sativa (indica cultivar-group) serine/threo... 48 0.010
6gb|AC098475.2| Homo sapiens chromosome 3 clone RP11-611H7, compl... 42 0.62
7emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on ch... 40 2.5
8dbj|AB205145.1| Epichloe festucae EF100, EF101, EF102, perA, EF1... 40 2.5
9gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome... 40 2.5
10gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 38 9.7
11gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 38 9.7
12gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 38 9.7
13emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in... 38 9.7
14emb|BX061330.1|CNS09JHI Single read from an extremity of a full-... 38 9.7
15emb|BX053060.1|CNS09D3S Single read from an extremity of a full-... 38 9.7
16emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segmen... 38 9.7
17emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in... 38 9.7
18gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, compl... 38 9.7
19gb|AF295804.1| Danio rerio rho coiled-coil associated kinase alp... 38 9.7
20gb|AF403295.1|AF403295 Allium cepa clone ATP1-1 ATP-sulfurylase ... 38 9.7
21ref|XM_691785.1| PREDICTED: Danio rerio similar to rho coiled-co... 38 9.7
22gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, comp... 38 9.7
23gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, comp... 38 9.7
24gb|AF212154.1|AF212154 Allium cepa ATP-sulfurylase mRNA, complet... 38 9.7
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
26ref|NM_174863.2| Danio rerio rho-associated, coiled-coil contain... 38 9.7
27gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
28emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.7
29gb|CP000218.1| Drosophila melanogaster genomic scaffold 21100002... 38 9.7
30gb|CP000203.1| Drosophila melanogaster genomic scaffold 21100002... 38 9.7

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                            
Query: 24       tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83
                |||||||||| ||| |||  ||  |||||||||| ||| || |||| |||||||||||||
Sbjct: 23660950 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 23660891

                  
Query: 84       tc 85
                ||
Sbjct: 23660890 tc 23660889



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>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0029C06
          Length = 156500

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 24   tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83
            |||||||||| ||| |||  ||  |||||||||| ||| || |||| |||||||||||||
Sbjct: 9026 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 8967

              
Query: 84   tc 85
            ||
Sbjct: 8966 tc 8965



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>dbj|AP003629.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0481H08
          Length = 146841

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                          
Query: 24     tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83
              |||||||||| ||| |||  ||  |||||||||| ||| || |||| |||||||||||||
Sbjct: 141914 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 141855

                
Query: 84     tc 85
              ||
Sbjct: 141854 tc 141853



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>dbj|AK102270.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088P20, full
           insert sequence
          Length = 1916

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 24  tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83
           |||||||||| ||| |||  ||  |||||||||| ||| || |||| |||||||||||||
Sbjct: 185 tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 244

             
Query: 84  tc 85
           ||
Sbjct: 245 tc 246



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>gb|DQ248963.1| Oryza sativa (indica cultivar-group) serine/threonine kinase mRNA,
           complete cds
          Length = 1362

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 24  tcgccaaggtgaagntcgnggtcaacgccgacacaggctcccccgttgccatgaaggtgc 83
           |||||||||| ||| |||  ||  |||||||||| ||| || |||| |||||||||||||
Sbjct: 86  tcgccaaggtcaagttcgccgtggacgccgacaccggcgccgccgtcgccatgaaggtgc 145

             
Query: 84  tc 85
           ||
Sbjct: 146 tc 147



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>gb|AC098475.2| Homo sapiens chromosome 3 clone RP11-611H7, complete sequence
          Length = 152945

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 122    caacaggnaagccgccccacaaca 145
              ||||||| ||||||||||||||||
Sbjct: 125269 caacagggaagccgccccacaaca 125246



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>emb|AL450267.10| Human DNA sequence from clone RP11-344B23 on chromosome 9 Contains the 3'
              end of the PAX5 gene for paired box gene 5 (B-cell lineage
              specific activator protein) (BSAP), complete sequence
          Length = 125110

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     acacaggctcccccgttgcc 73
              ||||||||||||||||||||
Sbjct: 106527 acacaggctcccccgttgcc 106546



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>dbj|AB205145.1| Epichloe festucae EF100, EF101, EF102, perA, EF103, EF104, EF105,
             EF106, EF107, EF108, EF109, genes for hypothetical
             proteins, non-ribosomal peptide synthetase, complete cds
          Length = 37429

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    gccatgaaggtgctcagcatggcc 94
             |||||||||||| |||||||||||
Sbjct: 21407 gccatgaaggtggtcagcatggcc 21430



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>gb|AC147220.3| Mus musculus BAC clone RP23-51A20 from chromosome 18, complete sequence
          Length = 208705

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      ctgtatgaggtgggggttgg 23
              ||||||||||||||||||||
Sbjct: 134798 ctgtatgaggtgggggttgg 134779



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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 159    caaatccaaatcaaagtcc 177
              |||||||||||||||||||
Sbjct: 235920 caaatccaaatcaaagtcc 235902



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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
               sequence
          Length = 2105742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 105     tcaaccgtcgaattttgca 123
               |||||||||||||||||||
Sbjct: 1578831 tcaaccgtcgaattttgca 1578813



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>gb|AC186172.1| Ornithorhynchus anatinus chromosome UNK clone OABb-43A1, complete
            sequence
          Length = 180865

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 74   atgaaggtgctcagcatgg 92
            |||||||||||||||||||
Sbjct: 2013 atgaaggtgctcagcatgg 1995



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>emb|CR936241.17| Zebrafish DNA sequence from clone DKEY-18J18 in linkage group 18,
             complete sequence
          Length = 100610

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    gccatgaaggtgctcagca 89
             |||||||||||||||||||
Sbjct: 39860 gccatgaaggtgctcagca 39842



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>emb|BX061330.1|CNS09JHI Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC42AD01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 854

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  gaaggtgctcagcatggcc 94
           |||||||||||||||||||
Sbjct: 131 gaaggtgctcagcatggcc 149



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>emb|BX053060.1|CNS09D3S Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC30CA06 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 407

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 76  gaaggtgctcagcatggcc 94
           |||||||||||||||||||
Sbjct: 145 gaaggtgctcagcatggcc 163



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>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    gttggtcgccaaggtgaag 37
             |||||||||||||||||||
Sbjct: 87997 gttggtcgccaaggtgaag 88015



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>emb|CR762497.17| Zebrafish DNA sequence from clone DKEY-162B3 in linkage group 13,
             complete sequence
          Length = 258636

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 168   atcaaagtccttgtgctcc 186
             |||||||||||||||||||
Sbjct: 35226 atcaaagtccttgtgctcc 35244



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>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence
          Length = 180483

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     tcagcatggccactactat 102
              |||||||||||||||||||
Sbjct: 149974 tcagcatggccactactat 149956



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>gb|AF295804.1| Danio rerio rho coiled-coil associated kinase alpha mRNA, complete
           cds
          Length = 5447

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 71  gccatgaaggtgctcagca 89
           |||||||||||||||||||
Sbjct: 410 gccatgaaggtgctcagca 428



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>gb|AF403295.1|AF403295 Allium cepa clone ATP1-1 ATP-sulfurylase mRNA, complete cds
          Length = 1585

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   gaaggtgctcagcatggcc 94
            |||||||||||||||||||
Sbjct: 1111 gaaggtgctcagcatggcc 1129



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>ref|XM_691785.1| PREDICTED: Danio rerio similar to rho coiled-coil associated kinase
           alpha (LOC573683), mRNA
          Length = 2502

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 71  gccatgaaggtgctcagca 89
           |||||||||||||||||||
Sbjct: 454 gccatgaaggtgctcagca 472



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>gb|AC022163.5| Homo sapiens chromosome 5 clone RP11-454F19, complete sequence
          Length = 165675

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 84    tcagcatggccactactat 102
             |||||||||||||||||||
Sbjct: 24460 tcagcatggccactactat 24442



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>gb|AC008965.6| Homo sapiens chromosome 5 clone CTD-2364L17, complete sequence
          Length = 139939

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 84    tcagcatggccactactat 102
             |||||||||||||||||||
Sbjct: 45492 tcagcatggccactactat 45510



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>gb|AF212154.1|AF212154 Allium cepa ATP-sulfurylase mRNA, complete cds
          Length = 1635

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   gaaggtgctcagcatggcc 94
            |||||||||||||||||||
Sbjct: 1122 gaaggtgctcagcatggcc 1140



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 73       catgaaggtgctcagcatg 91
                |||||||||||||||||||
Sbjct: 26488990 catgaaggtgctcagcatg 26489008



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>ref|NM_174863.2| Danio rerio rho-associated, coiled-coil containing protein kinase 2
           (rock2), mRNA
          Length = 5447

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 71  gccatgaaggtgctcagca 89
           |||||||||||||||||||
Sbjct: 410 gccatgaaggtgctcagca 428



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 73       catgaaggtgctcagcatg 91
                |||||||||||||||||||
Sbjct: 26417159 catgaaggtgctcagcatg 26417177



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>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 73    catgaaggtgctcagcatg 91
             |||||||||||||||||||
Sbjct: 53086 catgaaggtgctcagcatg 53068



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>gb|CP000218.1| Drosophila melanogaster genomic scaffold 211000022280780
          Length = 166742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 71     gccatgaaggtgctcagca 89
              |||||||||||||||||||
Sbjct: 121255 gccatgaaggtgctcagca 121237



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>gb|CP000203.1| Drosophila melanogaster genomic scaffold 211000022280760
          Length = 90124

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 71    gccatgaaggtgctcagca 89
             |||||||||||||||||||
Sbjct: 21519 gccatgaaggtgctcagca 21537


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,249,266
Number of Sequences: 3902068
Number of extensions: 1249266
Number of successful extensions: 81801
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81675
Number of HSP's gapped (non-prelim): 126
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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