ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18p23 |
|---|---|
| Clone Library Name | barley_pub |
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 286 bits (732), Expect = 3e-77 Identities = 134/181 (74%), Positives = 157/181 (86%) Frame = +3 Query: 12 RANVQQLKLMGQGHPTGLTPNLLKLFEARPMLEHKPPVQKRKLPAYTGMAQFVSRFAEPG 191 RANV QLKLMGQ HPTGLT NLLKLFE RP LE+KPP +KRK P YTGMAQFVS FAEPG Sbjct: 25 RANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPG 84 Query: 192 DPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVAR 371 DPEYAPP P E ++K++RI KL+LE+G +K A++L+ Y+P +DPN T DPYKTLFV+R Sbjct: 85 DPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSR 144 Query: 372 LNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 LNYE+SES++KREFE+YGPIKRV LVTD+ TNKP+GYAFIEYMHTRDMK AYKQADG+K+ Sbjct: 145 LNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKI 204 Query: 552 D 554 D Sbjct: 205 D 205
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 165 bits (417), Expect = 9e-41 Identities = 83/171 (48%), Positives = 115/171 (67%), Gaps = 7/171 (4%) Frame = +3 Query: 63 LTPNLLKLFEARPMLEHKPPVQKRKLP-------AYTGMAQFVSRFAEPGDPEYAPPVPT 221 L PNLL LF R + + PP++K LP Y G+A ++ F +P D APP Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEK--LPHEKHHNQPYCGIAPYIREFEDPRD---APPPTR 59 Query: 222 CETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRV 401 ET+ E+ +R R+ K+E+ +V EL+ ++P +DPN D +KTLFVAR+NY+T+ES++ Sbjct: 60 AETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKL 119 Query: 402 KREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+D Sbjct: 120 RREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 165 bits (417), Expect = 9e-41 Identities = 83/171 (48%), Positives = 115/171 (67%), Gaps = 7/171 (4%) Frame = +3 Query: 63 LTPNLLKLFEARPMLEHKPPVQKRKLP-------AYTGMAQFVSRFAEPGDPEYAPPVPT 221 L PNLL LF R + + PP++K LP Y G+A ++ F +P D APP Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEK--LPHEKHHNQPYCGIAPYIREFEDPRD---APPPTR 59 Query: 222 CETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRV 401 ET+ E+ +R R+ K+E+ +V EL+ ++P +DPN D +KTLFVAR+NY+T+ES++ Sbjct: 60 AETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKL 119 Query: 402 KREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +REFE YGPIKR+ +V K + KPRGYAFIEY H RDM +AYK ADG+K+D Sbjct: 120 RREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 163 bits (412), Expect = 3e-40 Identities = 83/169 (49%), Positives = 117/169 (69%), Gaps = 5/169 (2%) Frame = +3 Query: 63 LTPNLLKLFEARPMLEHKPPVQK----RKLPAYTGMAQFVSRFAEPGDPEYAPPVP-TCE 227 L PNLL LF AR + PPV K +K Y G+A+F++ F +P D P+P T E Sbjct: 5 LPPNLLALFAAREPIPFMPPVDKLPHEKKSRGYLGVAKFMADFEDPKDT----PLPKTVE 60 Query: 228 TKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKR 407 T+ E+ +R R+ K EQ A K+ +E+ ++P N T DP++TLF+AR+NY+TSES+++R Sbjct: 61 TRQERLERRRREKAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRR 120 Query: 408 EFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 EFE YGPIK++ L+ D+++ KP+GYAFIEY H RDM AYK ADG+K+D Sbjct: 121 EFEFYGPIKKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKID 169
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 160 bits (406), Expect = 2e-39 Identities = 80/169 (47%), Positives = 112/169 (66%), Gaps = 5/169 (2%) Frame = +3 Query: 63 LTPNLLKLFEARPMLEHKPPV-----QKRKLPAYTGMAQFVSRFAEPGDPEYAPPVPTCE 227 L PNLL LF R + + PP+ +K Y G+A ++ F +P D APP E Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61 Query: 228 TKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKR 407 T+ E+ +R R+ K+E+ V EL+ ++P +D N D +KTLFVAR+NY+T+ES+++R Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121 Query: 408 EFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 EFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+D Sbjct: 122 EFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID 170
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 155 bits (393), Expect = 6e-38 Identities = 80/172 (46%), Positives = 112/172 (65%), Gaps = 8/172 (4%) Frame = +3 Query: 63 LTPNLLKLFEARPMLEHKPPV-----QKRKLPAYTGMAQFVSRFAEPGDPEYAPPVPTCE 227 L PNLL LF R + + PP+ +K Y G+A ++ F +P D APP E Sbjct: 5 LPPNLLALFAPRDPVPYLPPLDKLPHEKHHNQPYCGIAPYIREFEDPRD---APPPTRAE 61 Query: 228 TKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKR 407 T+ E+ +R R+ K+E+ V EL+ ++P +D N D +KTLFVAR+NY+T+ES+++R Sbjct: 62 TREERMERKRREKIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRR 121 Query: 408 EFEAYGPIKRVRLVTDK---DTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 EFE YGPIKR+ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+D Sbjct: 122 EFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKID 173
>RU17_YEAST (Q00916) U1 small nuclear ribonucleoprotein 70 kDa homolog| Length = 300 Score = 87.4 bits (215), Expect = 2e-17 Identities = 51/157 (32%), Positives = 86/157 (54%), Gaps = 6/157 (3%) Frame = +3 Query: 81 KLFEARPMLEHKPPV-----QKRKLPAYTGMAQFVSRFAEPGDPEYAPPVPTCETKAEKK 245 +LF+ RP L +K P +++ P TG+A +S + E+ P + + Sbjct: 14 RLFKPRPPLSYKRPTDYPYAKRQTNPNITGVANLLSTSLKHYMEEFPEGSPNNHLQRYED 73 Query: 246 DRIRKLKLEQGADKVAKELQNYNPQSDPNTT-SDPYKTLFVARLNYETSESRVKREFEAY 422 ++ K+K Q D+ LQN+NP DP+ +DPY+T+F+ RL Y+ E +++ F + Sbjct: 74 IKLSKIKNAQLLDR---RLQNWNPNVDPHIKDTDPYRTIFIGRLPYDLDEIELQKYFVKF 130 Query: 423 GPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 G I+++R+V DK T K +GYAFI + K A+K+ Sbjct: 131 GEIEKIRIVKDKITQKSKGYAFIVFKDPISSKMAFKE 167
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/97 (35%), Positives = 54/97 (55%) Frame = +3 Query: 264 KLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVR 443 K+E + ELQ P+ PN S P KTLFV L+ +T+E +K FE G + R R Sbjct: 544 KMEIEGRTIRLELQG--PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RAR 598 Query: 444 LVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +VTD++T +G+ F+++ D K A + + ++D Sbjct: 599 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 635 Score = 39.3 bits (90), Expect = 0.008 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNY--------NPQSDPNTT-SDPYKTLFVARLN 377 E K+E D + L+ +QGA+ + + Y ++ N+T S KTL ++ L+ Sbjct: 435 EFKSEA-DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLS 493 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 Y +E ++ FE IK V K +GYAFIE+ D K A + +++ Sbjct: 494 YSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIE 548
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/97 (35%), Positives = 54/97 (55%) Frame = +3 Query: 264 KLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVR 443 K+E + ELQ P+ PN S P KTLFV L+ +T+E +K FE G + R R Sbjct: 547 KMEIEGRTIRLELQG--PRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RAR 601 Query: 444 LVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +VTD++T +G+ F+++ D K A + + ++D Sbjct: 602 IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 638 Score = 38.5 bits (88), Expect = 0.013 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 9/119 (7%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNY--------NPQSDPNTT-SDPYKTLFVARLN 377 E K+E D + L+ +QGA+ + + Y ++ N+T S KTL ++ L+ Sbjct: 438 EFKSEA-DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLS 496 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 Y +E ++ FE IK V K +GYAFIE+ D K A + +++ Sbjct: 497 YSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIE 551
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/88 (34%), Positives = 50/88 (56%) Frame = +3 Query: 291 AKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNK 470 A L+ P+ PN S P KTLFV L+ +T+E +K F+ G + R R+VTD++T Sbjct: 553 AIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGS 609 Query: 471 PRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +G+ F+++ D K A + + ++D Sbjct: 610 SKGFGFVDFNSEEDAKAAKEAMEDGEID 637 Score = 42.4 bits (98), Expect = 9e-04 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +3 Query: 303 QNYNPQSDPNTT-SDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 QN + + N+T S KTL ++ L+Y +E ++ FE IK V K +G Sbjct: 470 QNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKG 525 Query: 480 YAFIEYMHTRDMKNAYKQADGRKVD 554 YAFIE+ D K A + R+++ Sbjct: 526 YAFIEFASFEDAKEALNSCNKREIE 550
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/88 (34%), Positives = 50/88 (56%) Frame = +3 Query: 291 AKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNK 470 A L+ P+ PN S P KTLFV L+ +T+E +K F+ G + R R+VTD++T Sbjct: 552 AIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGS 608 Query: 471 PRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +G+ F+++ D K A + + ++D Sbjct: 609 SKGFGFVDFNSEEDAKAAKEAMEDGEID 636 Score = 42.4 bits (98), Expect = 9e-04 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +3 Query: 303 QNYNPQSDPNTT-SDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 QN + + N+T S KTL ++ L+Y +E ++ FE IK V K +G Sbjct: 469 QNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKG 524 Query: 480 YAFIEYMHTRDMKNAYKQADGRKVD 554 YAFIE+ D K A + R+++ Sbjct: 525 YAFIEFASFEDAKEALNSCNKREIE 549
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 58.2 bits (139), Expect = 2e-08 Identities = 30/88 (34%), Positives = 50/88 (56%) Frame = +3 Query: 291 AKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNK 470 A L+ P+ PN S P KTLFV L+ +T+E +K F+ G + R R+VTD++T Sbjct: 551 AIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGS 607 Query: 471 PRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +G+ F+++ D K A + + ++D Sbjct: 608 SKGFGFVDFNSEEDAKAAKEAMEDGEID 635 Score = 42.4 bits (98), Expect = 9e-04 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +3 Query: 303 QNYNPQSDPNTT-SDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 QN + + N+T S KTL ++ L+Y +E ++ FE IK V K +G Sbjct: 468 QNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKG 523 Query: 480 YAFIEYMHTRDMKNAYKQADGRKVD 554 YAFIE+ D K A + R+++ Sbjct: 524 YAFIEFASFEDAKEALNSCNKREIE 548
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 56.2 bits (134), Expect = 6e-08 Identities = 26/66 (39%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ LN ET+E ++ F YG I V L+ D++TNK RG+AF+ + D K+A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69 Query: 537 DGRKVD 554 +G+ +D Sbjct: 70 NGKSLD 75
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 55.8 bits (133), Expect = 8e-08 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 5/129 (3%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLF 362 +P +PE VP ET ++ E+GAD + +++ + + S P TLF Sbjct: 683 DPAEPE---TVPDGETPEDENPT------EEGADNSSAKMEEEEEEEEEEEESLPGCTLF 733 Query: 363 VARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNK-----PRGYAFIEYMHTRDMKNAY 527 + LN++T+E ++K F G +K + K NK G+ F+EY + A Sbjct: 734 IKNLNFDTTEEKLKEVFSKVGTVKSCSI--SKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791 Query: 528 KQADGRKVD 554 KQ G VD Sbjct: 792 KQLQGHVVD 800 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/63 (36%), Positives = 35/63 (55%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L Y ++E +++ F YGP+ + D T KP+G+AFI +M AY + Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463 Query: 537 DGR 545 DG+ Sbjct: 464 DGQ 466
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 55.8 bits (133), Expect = 8e-08 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = +3 Query: 315 PQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIE 494 P DP +++FV + YE +E ++K F GP+ RLV D++T KP+GY F E Sbjct: 5 PVRDP-AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63 Query: 495 YMHTRDMKNAYKQADGRK 548 Y +A + +GR+ Sbjct: 64 YQDQETALSAMRNLNGRE 81
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 55.5 bits (132), Expect = 1e-07 Identities = 24/66 (36%), Positives = 39/66 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +++FV + YE +E ++K F GP+ RLV D++T KP+GY F EY +A + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 531 QADGRK 548 +GR+ Sbjct: 76 NLNGRE 81
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 55.5 bits (132), Expect = 1e-07 Identities = 24/66 (36%), Positives = 39/66 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +++FV + YE +E ++K F GP+ RLV D++T KP+GY F EY +A + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 531 QADGRK 548 +GR+ Sbjct: 76 NLNGRE 81
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 55.5 bits (132), Expect = 1e-07 Identities = 24/66 (36%), Positives = 39/66 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +++FV + YE +E ++K F GP+ RLV D++T KP+GY F EY +A + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 531 QADGRK 548 +GR+ Sbjct: 76 NLNGRE 81
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 55.5 bits (132), Expect = 1e-07 Identities = 28/65 (43%), Positives = 41/65 (63%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ LN ET+E +K F +GPI V L+ D+ T+K RG+AFI + + D KNA K Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDM 68 Query: 537 DGRKV 551 +G+ + Sbjct: 69 NGKSL 73
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/63 (38%), Positives = 37/63 (58%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+Y +SE +++ F AYGP+ + D T KP+G+AF+ +M AY + Sbjct: 402 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 461 Query: 537 DGR 545 DG+ Sbjct: 462 DGQ 464 Score = 48.9 bits (115), Expect = 1e-05 Identities = 47/182 (25%), Positives = 68/182 (37%), Gaps = 9/182 (4%) Frame = +3 Query: 36 LMGQGHPTGLTPNLLKLFEARPMLEHKPPVQKRKLPAYTGMAQFVSRFAEPG--DPEYAP 209 L+ +G T + L+ EAR H + +P Y A A P D ++ Sbjct: 614 LLPEGGITAIV-EFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQ 672 Query: 210 PVPTCETKAEK--KDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYE 383 P E + E K +E K + + + S P TLF+ LN+ Sbjct: 673 PAEKAEVEQETVLDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCTLFIKNLNFS 732 Query: 384 TSESRVKREFEAYGPIKRVRLVTDKDTNK-----PRGYAFIEYMHTRDMKNAYKQADGRK 548 T+E +K F G IK + K NK G+ F+EY + A KQ G Sbjct: 733 TTEETLKGVFSKVGAIKSCTI--SKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 790 Query: 549 VD 554 VD Sbjct: 791 VD 792
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/66 (36%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ LN+ET+E +++ F YG I V +V D++T + RG+ F+ + + D K+A Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66 Query: 537 DGRKVD 554 +G+ VD Sbjct: 67 NGKSVD 72
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 5/97 (5%) Frame = +3 Query: 276 GADKVAKELQNYNPQSDPN-----TTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRV 440 G + + K+ +NY+ + D + + + P + LFV L+++ ++ +++ F+ G I ++ Sbjct: 209 GRNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKI 268 Query: 441 RLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 R+ T +D+ K +G+AFI++ + N K RK+ Sbjct: 269 RMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKI 305
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/66 (36%), Positives = 40/66 (60%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ LN ET+E ++ F YG I + L+ D++TNK RG+AF+ + D K+ + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69 Query: 537 DGRKVD 554 +G+ +D Sbjct: 70 NGKSLD 75
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 54.3 bits (129), Expect = 2e-07 Identities = 26/110 (23%), Positives = 64/110 (58%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 ++++EK++ K + + A++ E ++ N + T +P T+FV RL++ + +K Sbjct: 128 DSESEKEESNDKKRKSEDAEEEEDE-ESSNKKQKNEETEEP-ATIFVGRLSWSIDDEWLK 185 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +EFE G + R++ ++ T++ RGY ++++ + + A ++ G+++D Sbjct: 186 KEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEID 235 Score = 49.7 bits (117), Expect = 6e-06 Identities = 20/75 (26%), Positives = 39/75 (52%) Frame = +3 Query: 330 NTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 +T S+P TLF+ L++ + F +G + VR+ T +T +P+G+ ++++ + Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319 Query: 510 DMKNAYKQADGRKVD 554 D K A G +D Sbjct: 320 DAKKALDALQGEYID 334
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 53.9 bits (128), Expect = 3e-07 Identities = 25/66 (37%), Positives = 40/66 (60%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ LN ET+E ++ F YG I + L+ D++TNK RG+AF+ D K+A + Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDM 69 Query: 537 DGRKVD 554 +G+ +D Sbjct: 70 NGKSLD 75
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.1 bits (126), Expect = 5e-07 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+++T+E +++ F YG I V +V D++T + RG+ F+ + + D K+A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 537 DGRKVD 554 +G+ VD Sbjct: 68 NGKSVD 73
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 53.1 bits (126), Expect = 5e-07 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+++T+E +++ F YG I V +V D++T + RG+ F+ + + D K+A Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 537 DGRKVD 554 +G+ VD Sbjct: 68 NGKSVD 73
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.1 bits (126), Expect = 5e-07 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+++T+E +++ F YG I V +V D++T + RG+ F+ + + D K+A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 537 DGRKVD 554 +G+ VD Sbjct: 68 NGKSVD 73
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.1 bits (126), Expect = 5e-07 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+++T+E +++ F YG I V +V D++T + RG+ F+ + + D K+A Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 537 DGRKVD 554 +G+ VD Sbjct: 68 NGKSVD 73
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 53.1 bits (126), Expect = 5e-07 Identities = 23/66 (34%), Positives = 41/66 (62%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+++T+E +++ F YG I V +V D++T + RG+ F+ + + D K+A Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67 Query: 537 DGRKVD 554 +G+ VD Sbjct: 68 NGKSVD 73
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 52.4 bits (124), Expect = 9e-07 Identities = 23/66 (34%), Positives = 38/66 (57%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +++FV + YE +E ++K F G + RLV D++T KP+GY F EY +A + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 531 QADGRK 548 +GR+ Sbjct: 76 NLNGRE 81
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 52.4 bits (124), Expect = 9e-07 Identities = 23/66 (34%), Positives = 38/66 (57%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +++FV + YE +E ++K F G + RLV D++T KP+GY F EY +A + Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 531 QADGRK 548 +GR+ Sbjct: 76 NLNGRE 81
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 52.0 bits (123), Expect = 1e-06 Identities = 22/66 (33%), Positives = 38/66 (57%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV LN+ T E ++ F ++GPI V +V D++T + RG+ FI + + +A + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 537 DGRKVD 554 +G +D Sbjct: 68 NGESLD 73
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 52.0 bits (123), Expect = 1e-06 Identities = 30/107 (28%), Positives = 50/107 (46%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 E E +R+ K+ A + K N + Q K LF+ L Y +E +K Sbjct: 282 ENNDEHLERVTNDKIAD-ASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLK 340 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGR 545 F +G +++V + DK TN P+G+A+I++ D AY + D + Sbjct: 341 SLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAK 387
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/85 (30%), Positives = 44/85 (51%) Frame = +3 Query: 300 LQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 + N + DP L V L+ T+E ++ F YGP+ V +V D+ T + RG Sbjct: 102 MSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG 161 Query: 480 YAFIEYMHTRDMKNAYKQADGRKVD 554 +AF+ + D K A ++A+G ++D Sbjct: 162 FAFVYFERIDDSKEAMERANGMELD 186
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/85 (30%), Positives = 44/85 (51%) Frame = +3 Query: 300 LQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 + N + DP L V L+ T+E ++ F YGP+ V +V D+ T + RG Sbjct: 100 MSNRRRHTGSRANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRG 159 Query: 480 YAFIEYMHTRDMKNAYKQADGRKVD 554 +AF+ + D K A ++A+G ++D Sbjct: 160 FAFVYFERIDDSKEAMERANGMELD 184
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 51.6 bits (122), Expect = 1e-06 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 5/130 (3%) Frame = +3 Query: 180 AEPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTL 359 +E GD + + + + ++K R + E+ K+ K P D N T T+ Sbjct: 216 SESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITK------PSQDSNETC----TV 265 Query: 360 FVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK-----NA 524 FV RL++ + + +EFE YG I R++ D + + +GY ++++ K N Sbjct: 266 FVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANG 325 Query: 525 YKQADGRKVD 554 K+ DGR V+ Sbjct: 326 TKEIDGRMVN 335 Score = 38.1 bits (87), Expect = 0.017 Identities = 15/53 (28%), Positives = 30/53 (56%) Frame = +3 Query: 339 SDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 S+P T+FV L++ +E + F G I+ +RL TD + + +G+ ++ + Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 51.2 bits (121), Expect = 2e-06 Identities = 34/119 (28%), Positives = 53/119 (44%) Frame = +3 Query: 198 EYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLN 377 E PP P + +DR R K + +PQ+ + + V LN Sbjct: 66 ESPPPEPRHRSGRSSRDRERMHKSRE------------HPQAS--------RCIGVFGLN 105 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 TS+ +V+ F YGPI+R+++V D T + RG+ FI + D + A G +VD Sbjct: 106 TNTSQHKVRELFNKYGPIERIQMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVD 164
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 50.8 bits (120), Expect = 3e-06 Identities = 21/56 (37%), Positives = 38/56 (67%) Frame = +3 Query: 330 NTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 ++ +P LFV L++ET+++ +K F G I+RVRL+T +DT K +G+ F+++ Sbjct: 221 SSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 50.8 bits (120), Expect = 3e-06 Identities = 22/67 (32%), Positives = 41/67 (61%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +L + L+Y+T+ + ++R FE YG I V + DK + + +G+ F+ + RD ++A + Sbjct: 20 SLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDR 79 Query: 534 ADGRKVD 554 DG+ VD Sbjct: 80 TDGKLVD 86
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/66 (33%), Positives = 37/66 (56%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV LN+ T E ++ F ++GPI V +V D++T + RG+ FI + + A + Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 537 DGRKVD 554 +G +D Sbjct: 68 NGESLD 73
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 DP L V L+ T+E ++ F YGPI V +V D+ + + RG+AF+ + + D K Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174 Query: 522 AYKQADGRKVD 554 A ++A+G ++D Sbjct: 175 AKERANGMELD 185
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 DP L V L+ T+E ++ F YGPI V +V D+ + + RG+AF+ + + D K Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174 Query: 522 AYKQADGRKVD 554 A ++A+G ++D Sbjct: 175 AKERANGMELD 185
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/71 (35%), Positives = 42/71 (59%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 DP L V L+ T+E ++ F YGPI V +V D+ + + RG+AF+ + + D K Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174 Query: 522 AYKQADGRKVD 554 A ++A+G ++D Sbjct: 175 AKERANGMELD 185
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 49.7 bits (117), Expect = 6e-06 Identities = 22/63 (34%), Positives = 38/63 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +++V L+Y+ SE+ + F YG +KRV+L TD++T + RG+ F+E + A + Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 534 ADG 542 DG Sbjct: 62 LDG 64
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 4/81 (4%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 D T + + LF+ L+Y T++ +K FE +G I V ++ D T + RG+ FI Y H Sbjct: 22 DSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSH 81 Query: 504 TRDMKNAYK----QADGRKVD 554 + + A K + DGR V+ Sbjct: 82 SSMIDEAQKSRPHKIDGRVVE 102 Score = 43.5 bits (101), Expect = 4e-04 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV L + E ++ F+ +G I + +V DK+T K RG+AF+E+ Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEF 170
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 48.9 bits (115), Expect = 1e-05 Identities = 31/108 (28%), Positives = 50/108 (46%) Frame = +3 Query: 231 KAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKRE 410 + E++ R + L LE D E++ P LFV +LN T + ++ Sbjct: 220 RREREARAQALTLEMVGDLPFAEVK------------PPENVLFVCKLNPVTQDEDLQLI 267 Query: 411 FEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F +GPI ++ DK T YAFIE+ + +D + AY + G +D Sbjct: 268 FSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLID 315
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/110 (29%), Positives = 52/110 (47%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 E KAEK+ + + + LE D P +D P LFV +LN T++ ++ Sbjct: 210 EIKAEKEAKTQAILLEMVGDL---------PDAD---IKPPENVLFVCKLNPVTTDEDLE 257 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F +GPI+ ++ D T + YAFIE+ D + A+ + D +D Sbjct: 258 IIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLID 307
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 48.5 bits (114), Expect = 1e-05 Identities = 32/110 (29%), Positives = 52/110 (47%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 E KAEK+ + + + LE D P +D P LFV +LN T++ ++ Sbjct: 210 EIKAEKEAKTQAILLEMVGDL---------PDAD---IKPPENVLFVCKLNPVTTDEDLE 257 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F +GPI+ ++ D T + YAFIE+ D + A+ + D +D Sbjct: 258 IIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLID 307
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/89 (24%), Positives = 46/89 (51%) Frame = +3 Query: 288 VAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTN 467 V K +P+ P +P ++V L ++ SR+++ F +G + R+V+D++T Sbjct: 128 VNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETG 187 Query: 468 KPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 + RG+ F+ ++ +A DG+ +D Sbjct: 188 RSRGFGFVTMSSESEVNDAIAALDGQTLD 216 Score = 36.6 bits (83), Expect = 0.049 Identities = 15/66 (22%), Positives = 35/66 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L Y+ ++ F+A G ++ ++ +++T++ RG+ F+ + + A + Sbjct: 57 LFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELL 116 Query: 537 DGRKVD 554 +G +D Sbjct: 117 NGYDMD 122
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P +LFV + +T ++REF YGPI V + D T +PRG+A++++ RD ++A Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67 Query: 525 YKQAD-----GRKVD 554 D GR+++ Sbjct: 68 LHNLDRKWICGRQIE 82
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P +LFV + +T ++REF YGPI V + D T +PRG+A++++ RD ++A Sbjct: 8 PNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDA 67 Query: 525 YKQAD-----GRKVD 554 D GR+++ Sbjct: 68 LHNLDRKWICGRQIE 82
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/63 (36%), Positives = 37/63 (58%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 QS + D + LFV L++ET+E ++ F YG I+ + + TD T + RG+AFI + Sbjct: 45 QSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVF 104 Query: 498 MHT 506 +T Sbjct: 105 TNT 107 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFI---- 491 DP + +FV L E S+ +K F +G I V + DK ++ +G+ FI Sbjct: 127 DPKKAKARHGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDS 186 Query: 492 EYMHTRDMKNAYKQADGRKVD 554 E + T +K ++ G++VD Sbjct: 187 EQVVTDLLKTPKQKIAGKEVD 207
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/67 (35%), Positives = 37/67 (55%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +L V L Y TS ++R FE YG + V + D+ T + RG+AF+ + RD ++A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 534 ADGRKVD 554 DG +D Sbjct: 74 MDGAVLD 80
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/67 (35%), Positives = 37/67 (55%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +L V L Y TS ++R FE YG + V + D+ T + RG+AF+ + RD ++A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 534 ADGRKVD 554 DG +D Sbjct: 74 MDGAVLD 80
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/67 (35%), Positives = 37/67 (55%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +L V L Y TS ++R FE YG + V + D+ T + RG+AF+ + RD ++A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 534 ADGRKVD 554 DG +D Sbjct: 74 MDGAVLD 80
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/67 (35%), Positives = 37/67 (55%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +L V L Y TS ++R FE YG + V + D+ T + RG+AF+ + RD ++A Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 534 ADGRKVD 554 DG +D Sbjct: 74 MDGAVLD 80
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/67 (35%), Positives = 37/67 (55%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 +L V L Y TS ++R FE YG + V + D+ T + RG+AF+ + RD ++A Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74 Query: 534 ADGRKVD 554 DG +D Sbjct: 75 MDGAVLD 81
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/84 (32%), Positives = 43/84 (51%) Frame = +3 Query: 303 QNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGY 482 Q PQ S KTLFV L+ +T+E +K EA+ R+VTD+DT +G+ Sbjct: 486 QGGGPQGGGRGGSAQSKTLFVRGLSEDTTEETLK---EAFDGSVNARIVTDRDTGASKGF 542 Query: 483 AFIEYMHTRDMKNAYKQADGRKVD 554 F+++ D K A + + ++D Sbjct: 543 GFVDFSTAEDAKAAKEAMEDGEID 566 Score = 36.6 bits (83), Expect = 0.049 Identities = 25/110 (22%), Positives = 52/110 (47%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 E + EK ++ K+ K+ K + ++ N +TLFV + Y T+ ++ Sbjct: 282 EEEVEKALKLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQ 341 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 FE K +R+ T KD + +G A++E+ + + A ++ G +++ Sbjct: 342 EIFE---NAKDIRIPTGKDGSN-KGIAYVEFSNEDEANKALEEKQGAEIE 387 Score = 35.0 bits (79), Expect = 0.14 Identities = 22/91 (24%), Positives = 41/91 (45%) Frame = +3 Query: 282 DKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKD 461 D ++ QN + P S K L V L+Y +E ++ FE K + ++ Sbjct: 394 DFTGEKSQNSGNKKGPEGDS---KVLVVNNLSYSATEDSLREVFE-----KATSIRIPQN 445 Query: 462 TNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 + +G+AFIE+ D K+A + +++ Sbjct: 446 QGRAKGFAFIEFSSAEDAKDAMDSCNNTEIE 476
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 T +P K +FV L+ +T E +++ F +G ++ + L D TNK RG+ FI + + Sbjct: 29 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 88 Query: 516 K 518 K Sbjct: 89 K 89
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 T +P K +FV L+ +T E +++ F +G ++ + L D TNK RG+ FI + + Sbjct: 177 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236 Query: 516 K 518 K Sbjct: 237 K 237
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 T +P K +FV L+ +T E +++ F +G ++ + L D TNK RG+ FI + + Sbjct: 177 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 236 Query: 516 K 518 K Sbjct: 237 K 237
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/61 (34%), Positives = 37/61 (60%) Frame = +3 Query: 372 LNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 LN T++ +V+ F +GPI+R+++V D T++ RG+ FI + + D + A G +V Sbjct: 112 LNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEV 171 Query: 552 D 554 D Sbjct: 172 D 172
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 47.8 bits (112), Expect = 2e-05 Identities = 20/61 (32%), Positives = 34/61 (55%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 T +P K +FV L+ +T E +++ F +G ++ + L D TNK RG+ FI + + Sbjct: 175 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 234 Query: 516 K 518 K Sbjct: 235 K 235
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 47.8 bits (112), Expect = 2e-05 Identities = 21/67 (31%), Positives = 40/67 (59%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+T S P +L+V L+ + +E+ + +F GPI +R+ D T+ YA++ + H Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQH 61 Query: 504 TRDMKNA 524 T+D ++A Sbjct: 62 TKDAEHA 68 Score = 37.0 bits (84), Expect = 0.038 Identities = 14/69 (20%), Positives = 38/69 (55%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + + R+K F +GP V+++TD ++ K +G+ F+ + D + A Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 + +G++++ Sbjct: 249 DEMNGKELN 257 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +FV L+ + + A+G I +V D++ +K GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A K+ +G Sbjct: 146 ETHEAAERAIKKMNG 160
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/80 (25%), Positives = 43/80 (53%) Frame = +3 Query: 315 PQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIE 494 P+ P T Y+ ++V + + ++R+++ F +G + R+V D++T + RG+ F+ Sbjct: 219 PERPPRTFEQSYR-IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVT 277 Query: 495 YMHTRDMKNAYKQADGRKVD 554 +M +A DG+ +D Sbjct: 278 MASEAEMSDAIANLDGQSLD 297 Score = 35.0 bits (79), Expect = 0.14 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 LFV L Y+ + R FE G ++ ++ ++DT++ RG+ F+ + + A Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKA 193
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/61 (29%), Positives = 33/61 (54%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ ++YE SE + F YG ++ V + D T K +G+ +++++ D AY+ Sbjct: 312 LFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSL 371 Query: 537 D 539 D Sbjct: 372 D 372 Score = 34.7 bits (78), Expect = 0.19 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 + + L +E + + F A+G +K VR V K RG+AF+E+ ++ + A Q Sbjct: 719 IIIKNLPFEATRKDLLELFGAFGQLKSVR-VPKKFDQSARGFAFVEFNLMKEAETAMSQL 777 Query: 537 DG 542 +G Sbjct: 778 EG 779
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +FV L Y T+++ +++ FE +G I+ ++TD+ T K RGY F+ + A Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69 Query: 528 KQ----ADGRKVD 554 K DGRK + Sbjct: 70 KDPNPIIDGRKAN 82
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 47.0 bits (110), Expect = 4e-05 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV + +T E ++ FE YG I + ++TDK + K RG+AF+ + Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTF 148 Score = 35.8 bits (81), Expect = 0.084 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 + ++ LF+ L++ET+E ++ +E +G + ++ D + + RG+ F+ + ++ Sbjct: 6 EQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA 65 Query: 522 AY----KQADGRKVD 554 A DGR V+ Sbjct: 66 AMATRPHTIDGRVVE 80
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = +3 Query: 282 DKVAKELQNYNPQSDPNTTSDPYKT-LFVARLNYETSESRVKREFEAYGPIKRVRLVTDK 458 DK A E + D N + LFV L Y+ SES ++ F +G I+ + + D Sbjct: 277 DKAAVESSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDT 336 Query: 459 DTNKPRGYAFIEYMHTRDMKNAYKQADGR 545 + +G+A+++Y+ AYK+ DG+ Sbjct: 337 RSTTSKGFAYVQYIEPDAAVQAYKELDGK 365 Score = 36.6 bits (83), Expect = 0.049 Identities = 36/129 (27%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Frame = +3 Query: 192 DPEYAPPVPTCETKAEKKDRIRKLKLEQG---ADKVAKELQNYNPQSDPNTTSDPYKTLF 362 D AP ETKA + QG AD A E +P TS TLF Sbjct: 560 DATTAPQTSVLETKA----------VSQGFSTADTFAAE-----DGDEPVVTS----TLF 600 Query: 363 VARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKP-----RGYAFIEYMHTRDMKNAY 527 V LN+ T+ R F+ R+ T D +P G+ F+++ + A Sbjct: 601 VKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAAL 660 Query: 528 KQADGRKVD 554 DG K+D Sbjct: 661 AAMDGYKLD 669
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 47.0 bits (110), Expect = 4e-05 Identities = 32/151 (21%), Positives = 64/151 (42%), Gaps = 17/151 (11%) Frame = +3 Query: 153 GMAQFVSRFAEPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYN------ 314 G+AQ F + G E A + ET + + + ADK + Y+ Sbjct: 112 GLAQL---FQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168 Query: 315 -----------PQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKD 461 P+ P T Y+ ++V + ++ ++R+++ F +G + R+V D++ Sbjct: 169 TVNKAAPRGSRPERAPRTFQPTYR-IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRE 227 Query: 462 TNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 + + RG+ F+ +M A DG+ +D Sbjct: 228 SGRSRGFGFVTMSSEAEMSEAIANLDGQTLD 258 Score = 30.8 bits (68), Expect = 2.7 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA---Y 527 LFV L Y+ + + F+ G ++ ++ +++T++ RG+ F+ + A Y Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELY 158 Query: 528 KQAD 539 Q D Sbjct: 159 SQYD 162
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 47.0 bits (110), Expect = 4e-05 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +3 Query: 216 PTCETKAEKKDRIRKLKLEQGADKV-----AKELQNYNPQSDPNTTSDPYKTLFVARLNY 380 PT E E + ++E A ++ + + N N + N S KTLFV L+ Sbjct: 506 PTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQS---KTLFVRGLSE 562 Query: 381 ETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 +T+E ++ FE G I R+VTD+DT +G+ F+++ D K A + + ++D Sbjct: 563 DTTEETLRESFE--GSIS-ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 617 Score = 38.9 bits (89), Expect = 0.010 Identities = 20/68 (29%), Positives = 34/68 (50%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 KTL V L+Y SE ++ F+ IK + + +P+GYAF+E+ D K A Sbjct: 461 KTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALN 516 Query: 531 QADGRKVD 554 + +++ Sbjct: 517 SCNNTEIE 524
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = +3 Query: 312 NPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFI 491 +P+ DP K +FV LN E +E +++ F +G I+ + L D NK RG+ FI Sbjct: 146 DPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFI 205 Query: 492 EYMHTRDMKNAYKQ 533 + +K ++ Sbjct: 206 TFKEEDPVKKVLEK 219 Score = 37.0 bits (84), Expect = 0.038 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ- 533 +FV L+++TS+ +K F +G + + D +T + RG+ FI + + ++ Q Sbjct: 77 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQK 136 Query: 534 ---ADGRKVD 554 DGR +D Sbjct: 137 EHRLDGRVID 146
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/54 (35%), Positives = 32/54 (59%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 T +P K +FV L+ +T E +++ F +G ++ + L D TNK RG+ FI + Sbjct: 167 TKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 220
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 46.6 bits (109), Expect = 5e-05 Identities = 19/65 (29%), Positives = 38/65 (58%) Frame = +3 Query: 360 FVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 FV L + TS ++ F +YG I +++TD++T + RG+ F+ + M +A + + Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 540 GRKVD 554 G+++D Sbjct: 71 GKELD 75
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 46.6 bits (109), Expect = 5e-05 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +FV L Y T+++ +++ FE +G I+ ++TD+ T K RGY F+ A Sbjct: 31 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRAC 90 Query: 528 KQ----ADGRKVD 554 K DGRK + Sbjct: 91 KDPNPIIDGRKAN 103
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 T P +LF+ + T ++REF YGPI V + D T +PRG+A++++ RD Sbjct: 5 TRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDA 64 Query: 516 KNA 524 ++A Sbjct: 65 EDA 67
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 46.2 bits (108), Expect = 6e-05 Identities = 24/73 (32%), Positives = 44/73 (60%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 TSD + L+V L+ +E +K+ F+ GPI ++++ DK+ NK YAF+EY + D Sbjct: 71 TSD--RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDA 127 Query: 516 KNAYKQADGRKVD 554 A + +G++++ Sbjct: 128 NIALQTLNGKQIE 140 Score = 37.7 bits (86), Expect = 0.022 Identities = 20/83 (24%), Positives = 38/83 (45%) Frame = +3 Query: 306 NYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYA 485 N+ QS +++ D + LFV LN + ++ F+ + ++ D T RGY Sbjct: 147 NWAFQSQQSSSDDTFN-LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYG 205 Query: 486 FIEYMHTRDMKNAYKQADGRKVD 554 F+ + D +NA G+ ++ Sbjct: 206 FVSFTSQDDAQNAMDSMQGQDLN 228
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 45.8 bits (107), Expect = 8e-05 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L+YET ES ++ F +G I+ + + D +G+A+++Y AY+ Sbjct: 297 LFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNL 356 Query: 537 DGR 545 DG+ Sbjct: 357 DGK 359
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 45.8 bits (107), Expect = 8e-05 Identities = 22/49 (44%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV L + E ++ F+ +G I V +V+DKDT K RG+AFIE+ Sbjct: 115 KKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEF 163 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Frame = +3 Query: 333 TTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 T + + LF+ L+Y T++ +K FE +G I V ++ D T + RG+ FI Y + Sbjct: 18 TEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYM 77 Query: 513 MKNAYK----QADGRKVD 554 + NA + DGR V+ Sbjct: 78 IDNAQNARPHKIDGRTVE 95
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 45.4 bits (106), Expect = 1e-04 Identities = 19/52 (36%), Positives = 35/52 (67%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 D +++FV L++E SE + + F + GPI+ VR+V D TN +G+A++++ Sbjct: 256 DRKRSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQF 307
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%) Frame = +3 Query: 237 EKKDRIRKLKLEQGADKVAKE-LQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREF 413 E K+R+ +++ E + +E L N + S ++++V ++Y + ++ F Sbjct: 16 EMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHF 75 Query: 414 EAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 + G + RV ++ DK T P+G+A+IE+ + NA Sbjct: 76 ASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTR---DMKN 521 + LF+ L+Y T++ +K+ FE +G I V ++ D T + RG+ FI Y D +N Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76 Query: 522 AY-KQADGRKVD 554 A + DGR V+ Sbjct: 77 ARPHKVDGRVVE 88 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/49 (38%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV + E E+ ++ F+ YG + +V DK+T K RG+AF+E+ Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEF 156
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 45.1 bits (105), Expect = 1e-04 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV + +T E ++ FE YG I+ ++TDK + K RG+ F+ + Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTF 148 Score = 35.8 bits (81), Expect = 0.084 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 + ++ LF+ L++ET+E ++ +E +G + ++ D + + RG+ F+ + ++ Sbjct: 6 EQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDA 65 Query: 522 AYK----QADGRKVD 554 A DGR V+ Sbjct: 66 AMSARPHTIDGRVVE 80
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/61 (36%), Positives = 34/61 (55%) Frame = +3 Query: 315 PQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIE 494 P+ + T+ K LFV L E ++ F +G + V+L+TDK T K RG+AF+E Sbjct: 111 PERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVE 170 Query: 495 Y 497 + Sbjct: 171 F 171 Score = 33.9 bits (76), Expect = 0.32 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Frame = +3 Query: 261 LKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRV 440 +K E +D+ A + + + D + + LF+ L T+E +K + +G + V Sbjct: 2 VKDEPLSDESADVIVLADREEDDICELEHLRKLFIGGLAPYTTEENLKLFYGQWGKVVDV 61 Query: 441 RLVTDKDTNKPRGYAFIEY----MHTRDMKNAYKQADGRKVD 554 ++ D T + RG+ FI Y M R +N DG+ V+ Sbjct: 62 VVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVE 103
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 45.1 bits (105), Expect = 1e-04 Identities = 30/108 (27%), Positives = 48/108 (44%) Frame = +3 Query: 231 KAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKRE 410 + E++ R + L LE D E++ P LFV +LN T + ++ Sbjct: 220 RREREARAQALTLEMVGDLPFAEVK------------PPENVLFVCKLNPVTQDEDLELI 267 Query: 411 FEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F +G I ++ DK T YAFIE+ +D + AY + G +D Sbjct: 268 FSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLID 315
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 45.1 bits (105), Expect = 1e-04 Identities = 30/108 (27%), Positives = 48/108 (44%) Frame = +3 Query: 231 KAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKRE 410 + E++ R + L LE D E++ P LFV +LN T + + Sbjct: 220 RREREARAQALTLEMVGDLPFAEVK------------PPENVLFVCKLNPVTQDEDLHLI 267 Query: 411 FEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F +G I ++ DK T YAFIE+ + +D + AY + G +D Sbjct: 268 FSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLID 315
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/114 (26%), Positives = 52/114 (45%) Frame = +3 Query: 213 VPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSE 392 V E A + +R R+ + E A + E+ P ++ P LFV +LN T++ Sbjct: 211 VEASEEAAAEAER-RRREREAAAQALTLEMMGDLPFAE---VKPPENVLFVCKLNPVTTD 266 Query: 393 SRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 ++ F +G I ++ D+ T YAFIE+ + + AY + D +D Sbjct: 267 EDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLID 320
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/110 (27%), Positives = 54/110 (49%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 ET +K R ++++ E A+ V E+ P + + P LFV +LN T + ++ Sbjct: 207 ETSEDKLQREKEMEAE--AEAVTLEMIGDLPFAH---VAPPENVLFVCKLNPVTQDEDLE 261 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F +G I +++ DK+T YAFIE+ + ++ AY + +D Sbjct: 262 LIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = +3 Query: 312 NPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFI 491 NP S P + +FV ++++T+ES +++ F YG +K V++V D+ +GY F+ Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFV 78 Query: 492 EYMHTRDMKNAYKQAD 539 + D + ++A+ Sbjct: 79 TFETQEDAQKILQEAE 94
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = +3 Query: 312 NPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFI 491 NP S P + +FV ++++T+ES +++ F YG +K V++V D+ +GY F+ Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFV 78 Query: 492 EYMHTRDMKNAYKQAD 539 + D + ++A+ Sbjct: 79 TFETQEDAQKILQEAE 94
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ + Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 153 Score = 43.1 bits (100), Expect = 5e-04 Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +S+ + + LF+ L++ET++ ++ FE +G + ++ D ++ + RG+ F+ Y Sbjct: 3 KSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTY 62 Query: 498 MHTRDMKNAY----KQADGRKVD 554 + T ++ A + DGR V+ Sbjct: 63 LSTDEVDAAMTARPHKVDGRVVE 85
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = +3 Query: 312 NPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFI 491 NP S P + +FV ++++T+E+ +++ F YG +K V++V D+ +GY FI Sbjct: 20 NPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFI 78 Query: 492 EYMHTRDMKNAYKQAD 539 + D + ++A+ Sbjct: 79 TFETQEDAQKILQEAE 94
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 44.3 bits (103), Expect = 2e-04 Identities = 17/65 (26%), Positives = 37/65 (56%) Frame = +3 Query: 360 FVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 FV L + T + ++ F YG + +++ D++T + RG+ F+ + + MK+A + + Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMN 70 Query: 540 GRKVD 554 G+ +D Sbjct: 71 GQDLD 75
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/67 (31%), Positives = 37/67 (55%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +TL+V L+ + +E + + F GP K +++T+ +N P Y F+E+ RD A Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66 Query: 531 QADGRKV 551 +GRK+ Sbjct: 67 AMNGRKI 73
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/96 (21%), Positives = 44/96 (45%) Frame = +3 Query: 255 RKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIK 434 R L++ G +E ++ S + D ++V L + + ++ F G + Sbjct: 156 RALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV 215 Query: 435 RVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADG 542 ++V D+D+ + RG+ F+ Y ++ NA + DG Sbjct: 216 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/96 (25%), Positives = 47/96 (48%) Frame = +3 Query: 267 LEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRL 446 +E G D V +E +N++P +FV L + + + FE G ++ V + Sbjct: 70 VEDGDDGVEEE-RNFSPDLK----------IFVGNLPFSADSAALAELFERAGNVEMVEV 118 Query: 447 VTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 + DK T + RG+ F+ +++ A +Q +G ++D Sbjct: 119 IYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELD 154
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/73 (28%), Positives = 36/73 (49%) Frame = +3 Query: 294 KELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKP 473 K+ N D T + ++V+RL + E + + F +G +K VRL +K T Sbjct: 72 KKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNS 131 Query: 474 RGYAFIEYMHTRD 512 R Y F+E+++ D Sbjct: 132 RHYGFLEFVNKED 144
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L+V L++ +E ++ FE +G I + L+ D DT + +GY FI + + + A +Q Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324 Query: 537 DG 542 +G Sbjct: 325 NG 326
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/85 (29%), Positives = 43/85 (50%) Frame = +3 Query: 270 EQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLV 449 +Q D+V +E +++N ++VA ++ + SE +K FEA+GPI +L Sbjct: 213 QQVIDEVQEEAKSFN-------------RIYVASIHPDLSEEDIKSVFEAFGPILYCKLA 259 Query: 450 TDKDTNKPRGYAFIEYMHTRDMKNA 524 + +GY FIEY + + M A Sbjct: 260 QGTSLHTHKGYGFIEYANKQAMDEA 284 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 ++V +++E E ++ F +GPIK + + D T K +G+AF+EY + A +Q Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 537 DG 542 +G Sbjct: 192 NG 193
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV + +T E ++ FE YG I + ++TD+ + K RG+ F+ + Sbjct: 112 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 160 Score = 36.6 bits (83), Expect = 0.049 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 + ++ LF+ L++ET+E ++ +E +G + ++ D + + RG+ F+ + ++ Sbjct: 18 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 77 Query: 522 AY----KQADGRKVD 554 A DGR V+ Sbjct: 78 AMAARPHSIDGRVVE 92
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/55 (30%), Positives = 35/55 (63%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ +E+ ++ FE YG +K V+++TD+ T +GY F+ ++ D++ Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDR-TGVSKGYGFVSFLDNVDVQ 90
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K LFV + +T E ++ FE YG I + ++TD+ + K RG+ F+ + Sbjct: 100 KKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTF 148 Score = 36.6 bits (83), Expect = 0.049 Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 + ++ LF+ L++ET+E ++ +E +G + ++ D + + RG+ F+ + ++ Sbjct: 6 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDA 65 Query: 522 AY----KQADGRKVD 554 A DGR V+ Sbjct: 66 AMAARPHSIDGRVVE 80
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/67 (34%), Positives = 35/67 (52%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 D TL V L+ +T E ++ F +G I+RV L DK+T + +G+AF+ Y Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIK 258 Query: 522 AYKQADG 542 A + DG Sbjct: 259 ARDRLDG 265
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 4/118 (3%) Frame = +3 Query: 213 VPTCETKAEKKDRI----RKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNY 380 V ET EK +R R L + + A + ++ P+ P ++ ++V L + Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR------PERAPRVYEPAFR-VYVGNLPW 253 Query: 381 ETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 + R+++ F +G + R+V D++T + RG+ F+ ++ A DG+ ++ Sbjct: 254 DVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 311 Score = 32.3 bits (72), Expect = 0.93 Identities = 13/59 (22%), Positives = 31/59 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 LFV L Y+ + + FE G ++ ++ +++T++ RG+ F+ + + A ++ Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 43.1 bits (100), Expect = 5e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ + Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +S+ + + LF+ L++ET++ ++ FE +G + ++ D +T + RG+ F+ Y Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 498 MHTRDMKNAYK----QADGRKVD 554 ++ A + DGR V+ Sbjct: 62 ATVEEVDAAMNARPHKVDGRVVE 84
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +3 Query: 312 NPQSDPNTTSDPYKTLFVARLNYET-SESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 +P+ DP K +FV LN E+ +E +++ F +G I+ + L D NK RG+ F Sbjct: 139 DPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVF 198 Query: 489 IEYMHTRDMKNAYKQ 533 I + +K ++ Sbjct: 199 ITFKEEEPVKKVLEK 213 Score = 39.7 bits (91), Expect = 0.006 Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 4/123 (3%) Frame = +3 Query: 198 EYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLN 377 E PP P + +D+I K E+ A K +FV L+ Sbjct: 40 EARPPRPRAGIRTAPRDQINASKNEEDAGK-----------------------MFVGGLS 76 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ----ADGR 545 ++TS+ +K F +G + + D +T + RG+ FI + ++ Q DGR Sbjct: 77 WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 136 Query: 546 KVD 554 +D Sbjct: 137 VID 139
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 43.1 bits (100), Expect = 5e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ + Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +S+ + + LF+ L++ET++ ++ FE +G + ++ D +T + RG+ F+ Y Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 498 MHTRDMKNAYK----QADGRKVD 554 ++ A + DGR V+ Sbjct: 62 ATVEEVDAAMNARPHKVDGRVVE 84
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 43.1 bits (100), Expect = 5e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ + Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +S+ + + LF+ L++ET++ ++ FE +G + ++ D +T + RG+ F+ Y Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 498 MHTRDMKNAYK----QADGRKVD 554 ++ A + DGR V+ Sbjct: 62 ATVEEVDAAMNARPHKVDGRVVE 84
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 43.1 bits (100), Expect = 5e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ + Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/79 (26%), Positives = 42/79 (53%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +S+ + + LF+ L++ET++ ++ FE +G + ++ D +T + RG+ F+ Y Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 498 MHTRDMKNAYKQADGRKVD 554 T + +A A KVD Sbjct: 62 A-TVEKVDAAMNARPHKVD 79
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/114 (23%), Positives = 51/114 (44%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLF 362 E E + P+ ET+ EKK + E N + + P+ T+ +L+ Sbjct: 26 ESSTKEESSNTPSTETQPEKKAEEPEAAAEPSESTSTPT--NASSVATPSGTAPTSASLY 83 Query: 363 VARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 V L+ +E+ + F + GP+ +R+ D T + GYA++ + + D + A Sbjct: 84 VGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137 Score = 40.8 bits (94), Expect = 0.003 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Frame = +3 Query: 183 EPGDPEYAPP---VPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYK 353 E D EY V + K E+++ +RK + +K+ K Q N Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNK-YQGVN------------- 365 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 LF+ L E + R+K EF A+G I +++TD + K +G+ F+ Y + A + Sbjct: 366 -LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTE 423 Query: 534 ADGR 545 + R Sbjct: 424 MNQR 427 Score = 33.9 bits (76), Expect = 0.32 Identities = 18/77 (23%), Positives = 37/77 (48%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 QS + +++ L+ E +E F +G I + LV D++ +KPRG+ F+ Y Sbjct: 250 QSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN-DKPRGFGFVNY 308 Query: 498 MHTRDMKNAYKQADGRK 548 + + A + + ++ Sbjct: 309 ANHECAQKAVDELNDKE 325
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/87 (25%), Positives = 48/87 (55%) Frame = +3 Query: 237 EKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFE 416 E + + KL +E G +V+++L + + +++FV + + + +++ F+ Sbjct: 29 ELDELVGKLSIE-GTPQVSQKLSK--EEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFK 85 Query: 417 AYGPIKRVRLVTDKDTNKPRGYAFIEY 497 G IKR+ L+ D++T P+GY +IE+ Sbjct: 86 DCGQIKRITLLYDRNTGTPKGYGYIEF 112
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 43.1 bits (100), Expect = 5e-04 Identities = 17/49 (34%), Positives = 31/49 (63%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++TD+ + K RG+AF+ + Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 152 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +S+ + + LF+ L++ET++ ++ FE +G + ++ D +T + RG+ F+ Y Sbjct: 2 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 61 Query: 498 MHTRDMKNAYK----QADGRKVD 554 ++ A + DGR V+ Sbjct: 62 ATVEEVDAAMNARPHKVDGRVVE 84
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 43.1 bits (100), Expect = 5e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+ S P +L+V L+ + +E+ + +F GPI +R+ D T + GYA++ + Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 504 TRDMKNA 524 D + A Sbjct: 62 PADAERA 68 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/69 (23%), Positives = 37/69 (53%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + ++ R+K F YGP V+++TD D K +G+ F+ + D + A Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 + +G+ ++ Sbjct: 249 DEMNGKDMN 257 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/75 (22%), Positives = 32/75 (42%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A + +G Sbjct: 146 ETQEAAERAIDKMNG 160
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 43.1 bits (100), Expect = 5e-04 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 16/130 (12%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQ----SDPNTTSDPY 350 EPG E P E + + R ++E+ A+K+ KELQN + S P + P Sbjct: 96 EPGLVEADPGDGAIEDPELEAIKARVREMEEEAEKL-KELQNEVEKQMNMSPPPGNAGPV 154 Query: 351 ------------KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIE 494 ++++V ++Y + ++ F G + RV ++ DK + P+G+A+IE Sbjct: 155 IMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 214 Query: 495 YMHTRDMKNA 524 + ++ + Sbjct: 215 FSDKESVRTS 224
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 42.7 bits (99), Expect = 7e-04 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 16/130 (12%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQ----SDPNTTSDPY 350 EPG E P E + + R ++E+ A+K+ KELQN + S P + P Sbjct: 100 EPGLVEGDPGDGAIEDPELEAIKARVREMEEEAEKL-KELQNEVEKQMNMSPPPGNAGPV 158 Query: 351 ------------KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIE 494 ++++V ++Y + ++ F G + RV ++ DK + P+G+A+IE Sbjct: 159 IMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 218 Query: 495 YMHTRDMKNA 524 + ++ + Sbjct: 219 FSDKESVRTS 228
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 42.7 bits (99), Expect = 7e-04 Identities = 16/65 (24%), Positives = 39/65 (60%) Frame = +3 Query: 360 FVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 FV L + T+ +++ F +G + +++TD++T + RG+ F+ + + M +A + + Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 540 GRKVD 554 G+++D Sbjct: 71 GKELD 75
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 42.7 bits (99), Expect = 7e-04 Identities = 23/65 (35%), Positives = 32/65 (49%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +FV L YE +E + F YG I + LV DK T K +G+ F+ Y R A Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 537 DGRKV 551 +G K+ Sbjct: 98 NGIKI 102
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 42.7 bits (99), Expect = 7e-04 Identities = 17/65 (26%), Positives = 37/65 (56%) Frame = +3 Query: 360 FVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 FV L + T + ++ F YG + +++ D++T + RG+ F+ + + MK+A + + Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70 Query: 540 GRKVD 554 G+ +D Sbjct: 71 GQDLD 75
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 42.7 bits (99), Expect = 7e-04 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +FV + Y+ SE ++ F GP+K +LV D +T +GY F E+ + A ++ Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 537 DGRKV 551 + ++ Sbjct: 69 NNSEL 73
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 42.7 bits (99), Expect = 7e-04 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 +SD + TL+V L++ T+E ++ F G +KR+ + DK G+ F+EY Sbjct: 21 RSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEY 80 Query: 498 MHTRDMKNAYKQADGRKVD 554 D A + +G ++D Sbjct: 81 YTRADAGTAMRFINGTRLD 99
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 42.7 bits (99), Expect = 7e-04 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%) Frame = +3 Query: 303 QNYNPQSDPNTTSD--PYKTLFVARLNYETSESRVKREFEAYGPIKR--------VRLVT 452 ++Y P++D ++ SD T+FV L S +V F+ G IK + L T Sbjct: 216 RDYGPRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYT 275 Query: 453 DKDTNKPRGYAFIEYMHTRDMKNAYKQADGRK 548 DKDT KP+G A + + K A DG++ Sbjct: 276 DKDTGKPKGEATVSFDDPPSAKAAIDWFDGKE 307
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 9e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+ S P +L+V L+ + +E+ + +F GPI +R+ D T + GYA++ + Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 504 TRDMKNA 524 D + A Sbjct: 62 PADAERA 68 Score = 37.7 bits (86), Expect = 0.022 Identities = 14/69 (20%), Positives = 38/69 (55%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + + R+K F +GP V+++TD ++ K +G+ F+ + D + A Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 + +G++++ Sbjct: 249 DEMNGKELN 257 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/75 (22%), Positives = 33/75 (44%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A ++ +G Sbjct: 146 ETQEAAERAIEKMNG 160
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 9e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+ S P +L+V L+ + +E+ + +F GPI +R+ D T + GYA++ + Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 504 TRDMKNA 524 D + A Sbjct: 62 PADAERA 68 Score = 37.7 bits (86), Expect = 0.022 Identities = 14/69 (20%), Positives = 38/69 (55%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + + R+K F +GP V+++TD ++ K +G+ F+ + D + A Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 + +G++++ Sbjct: 249 DEMNGKELN 257 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/75 (22%), Positives = 33/75 (44%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A ++ +G Sbjct: 146 ETQEAAERAIEKMNG 160
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 9e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+ S P +L+V L+ + +E+ + +F GPI +R+ D T + GYA++ + Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 504 TRDMKNA 524 D + A Sbjct: 62 PADAERA 68 Score = 37.0 bits (84), Expect = 0.038 Identities = 14/69 (20%), Positives = 38/69 (55%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + + R+K F +GP V+++TD ++ K +G+ F+ + D + A Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 + +G++++ Sbjct: 249 DEMNGKELN 257 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/75 (22%), Positives = 33/75 (44%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A ++ +G Sbjct: 146 ETQEAAERAIEKMNG 160
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 42.4 bits (98), Expect = 9e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+ S P +L+V L+ + +E+ + +F GPI +R+ D T + GYA++ + Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 504 TRDMKNA 524 D + A Sbjct: 62 PADAERA 68 Score = 37.0 bits (84), Expect = 0.038 Identities = 14/69 (20%), Positives = 38/69 (55%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + + R+K F +GP V+++TD ++ K +G+ F+ + D + A Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 + +G++++ Sbjct: 249 DEMNGKELN 257 Score = 31.2 bits (69), Expect = 2.1 Identities = 17/75 (22%), Positives = 33/75 (44%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A ++ +G Sbjct: 146 ETQEAAERAIEKMNG 160
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 42.4 bits (98), Expect = 9e-04 Identities = 31/121 (25%), Positives = 49/121 (40%) Frame = +3 Query: 180 AEPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTL 359 A DPE + P + E K + K +Q A+K K + L Sbjct: 268 AADSDPE-SEDEPIHDQGFECKQAEMQRKAQQAAEKDQKLVDQIMESG----------RL 316 Query: 360 FVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 F+ L + S + FE++G +K+V + DK T +G AF+ + AY+ D Sbjct: 317 FIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRAKD 376 Query: 540 G 542 G Sbjct: 377 G 377 Score = 35.4 bits (80), Expect = 0.11 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%) Frame = +3 Query: 264 KLEQGADKVAKELQNYNPQSDPNTTSDPYK--------TLFVARLNYETSESRVKREFEA 419 K+ + A V K + + NP D + + TL+V L++ T++ R+ F Sbjct: 584 KVVKQAPIVGKSIDSSNPSVDLDGPAGAGAGDEAVDGATLYVKNLSFSTTDERLTAFFHG 643 Query: 420 YGPIKRVRLVTDKDTNKP-----RGYAFIEYMHTRDMKNAYKQADGRKVD 554 R+ T D +P GY F+ + + A K DG+ +D Sbjct: 644 LSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAARTAQKAMDGKVLD 693 Score = 34.7 bits (78), Expect = 0.19 Identities = 17/56 (30%), Positives = 31/56 (55%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 + + L +E ++ ++ F + G +K VRL D N RG+ F+EY R+ ++A Sbjct: 721 ILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFD-NTTRGFGFVEYSTVREAQSA 775
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 42.4 bits (98), Expect = 9e-04 Identities = 22/74 (29%), Positives = 44/74 (59%) Frame = +3 Query: 330 NTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 +TT + +K LF++ L + ++ ++ +A+G +K +RLVT++ KP+G A++EY + Sbjct: 795 STTLEKHK-LFISGLPFSCTKEELEDICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENES 852 Query: 510 DMKNAYKQADGRKV 551 A + DG + Sbjct: 853 QASQAVMKMDGMTI 866
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 42.4 bits (98), Expect = 9e-04 Identities = 20/66 (30%), Positives = 39/66 (59%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P+ L V+ +++ ++ VK FE +G I+ V L D D N+ +G+ +I+Y + +NA Sbjct: 338 PFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNA 396 Query: 525 YKQADG 542 ++ +G Sbjct: 397 LEKMNG 402 Score = 37.7 bits (86), Expect = 0.022 Identities = 16/58 (27%), Positives = 34/58 (58%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 +T+FV++L + + FE GP++ ++V DK + + +G A++E+ H ++ A Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 42.4 bits (98), Expect = 9e-04 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 324 DPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 +P+ S P +L+V L+ + +E+ + +F GPI +R+ D T + GYA++ + Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61 Query: 504 TRDMKNA 524 D + A Sbjct: 62 PADAERA 68 Score = 36.2 bits (82), Expect = 0.064 Identities = 16/69 (23%), Positives = 34/69 (49%) Frame = +3 Query: 348 YKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY 527 + +++ + + R+K F YG V+++TD D K RG+ F+ + D + A Sbjct: 190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAV 248 Query: 528 KQADGRKVD 554 +G+ ++ Sbjct: 249 DDMNGKDLN 257 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/75 (22%), Positives = 32/75 (42%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GY F+ + Sbjct: 88 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 + A + +G Sbjct: 146 ETQEAAERAIDKMNG 160
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 42.0 bits (97), Expect = 0.001 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 TLFV RL +++ F GP+K+ +VT+K + RG+ ++ + D++ A K+ Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63 Query: 534 A---DGRKVD 554 +G K+D Sbjct: 64 ITTFEGCKID 73 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Frame = +3 Query: 252 IRKLKLEQGADKVAKELQNYNPQSDPN----TTSDPYKTLFVARLNYETSESRVKREFEA 419 + K KL + + K +P+ +P +D L + L+++ SE +K F Sbjct: 76 VAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTH 135 Query: 420 YGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 YG + V + K K RG+AF+++ + + A K A+ +++ Sbjct: 136 YGTVLEVN-IPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEI 178
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/68 (33%), Positives = 36/68 (52%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +T++V L + E V+ F YGP+ ++ L K +P GYAF+E+ RD ++A Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIH 63 Query: 531 QADGRKVD 554 DG D Sbjct: 64 GRDGYDFD 71
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q +P T + +FV + + E+ +K F +G + V ++ D + +PRG+ FI + Sbjct: 103 QKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITF 162 Query: 498 MHTRDMKNA----YKQADGRKVD 554 + + A + G+KV+ Sbjct: 163 EDEQSVDQAVNMHFHDIMGKKVE 185 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%) Frame = +3 Query: 330 NTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 N D LFV L++ T++ ++ F YG + ++ DK TN+ RG+ F+++ Sbjct: 3 NQGGDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62 Query: 510 DMKNAYKQ----ADGRKVD 554 + DGR +D Sbjct: 63 CVGTVLASRPHTLDGRNID 81
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/84 (29%), Positives = 42/84 (50%) Frame = +3 Query: 282 DKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKD 461 +K + Q PQ P T S TL+V +L+ T++ V E +GPI+ + ++ Sbjct: 485 EKERERRQKGLPQVKPETASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMI---- 540 Query: 462 TNKPRGYAFIEYMHTRDMKNAYKQ 533 PRG A+I +H +D A ++ Sbjct: 541 --PPRGCAYIVMVHRQDAYRALQK 562
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/73 (28%), Positives = 41/73 (56%) Frame = +3 Query: 333 TTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 +TS LF++ L + ++ ++ +A+G +K +RLVT++ KP+G A++EY + Sbjct: 795 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQ 853 Query: 513 MKNAYKQADGRKV 551 A + DG + Sbjct: 854 ASQAVMKMDGMTI 866
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 9/76 (11%) Frame = +3 Query: 318 QSDPNTTSDPY---------KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNK 470 QS TTS Y T+FV ++ E+ ++ F YG +K V+++TD+ T Sbjct: 20 QSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGV 78 Query: 471 PRGYAFIEYMHTRDMK 518 +GY F+ + + D++ Sbjct: 79 SKGYGFVSFYNDVDVQ 94
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 9/78 (11%) Frame = +3 Query: 312 NPQSDPNTTSDPY---------KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDT 464 N QS TS Y T+FV ++ E+ ++ F YG +K V+++TD+ T Sbjct: 18 NTQSSSAATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITDR-T 76 Query: 465 NKPRGYAFIEYMHTRDMK 518 +GY F+ + + D++ Sbjct: 77 GVSKGYGFVSFFNDVDVQ 94
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Frame = +3 Query: 330 NTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 N+ +D LFV L++ T++ ++ F YG + ++ DK TN+ RG+ F+++ Sbjct: 3 NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62 Query: 510 DMKNAYKQ----ADGRKVD 554 + DGR +D Sbjct: 63 CVGTVLASRPHTLDGRNID 81 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q P + + +FV + + E+ ++ F+ +G + V ++ D + +PRG+ FI + Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161 Query: 498 MHTRDMKNA----YKQADGRKVD 554 + + A + G+KV+ Sbjct: 162 EDEQSVDQAVNMHFHDIMGKKVE 184
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/73 (28%), Positives = 41/73 (56%) Frame = +3 Query: 333 TTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 +TS LF++ L + ++ ++ +A+G +K +RLVT++ KP+G A++EY + Sbjct: 813 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQ 871 Query: 513 MKNAYKQADGRKV 551 A + DG + Sbjct: 872 ASQAVMKMDGMTI 884
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 41.6 bits (96), Expect = 0.002 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++ D+ + K RG+AF+ + Sbjct: 118 KKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTF 166 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 + LF+ L++ET++ ++ FE +G + ++ D T + RG+ F+ Y ++ +A Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DASM 85 Query: 531 QADGRKVD 554 A KVD Sbjct: 86 SARPHKVD 93
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/65 (30%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV ++ E E ++ +F YG IK + L D+ T +GYA +EY + A + Sbjct: 75 LFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEAL 134 Query: 537 DGRKV 551 +G ++ Sbjct: 135 NGAEI 139
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 KTL+V L+ + +E+ + + F GP K +++ D N P Y F+E+ R A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALA 64 Query: 531 QADGRKV 551 +GRK+ Sbjct: 65 AMNGRKI 71
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/67 (31%), Positives = 35/67 (52%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 KTL+V L+ + +E+ + + F GP K +++ D N P Y F+E+ R A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP--YCFVEFHEHRHAAAALA 64 Query: 531 QADGRKV 551 +GRK+ Sbjct: 65 AMNGRKI 71
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 41.2 bits (95), Expect = 0.002 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 16/130 (12%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQ----SDPNTTSDPY 350 +PGD P E +A K R+R++ E+ A+K+ KELQN + S P + P Sbjct: 107 DPGDGAIEDP----ELEAIKA-RVREM--EEEAEKL-KELQNEVEKQMNMSPPPGNAGPV 158 Query: 351 ------------KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIE 494 ++++V ++Y + ++ F G + RV ++ DK + P+G+A+IE Sbjct: 159 IMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIE 218 Query: 495 YMHTRDMKNA 524 + ++ + Sbjct: 219 FSDKESVRTS 228
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 41.2 bits (95), Expect = 0.002 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++ D+ + K RG+AF+ + Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY- 527 + LF+ L++ET++ ++ FE +G + ++ D T + RG+ F+ Y ++ A Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94 Query: 528 ---KQADGRKVD 554 + DGR V+ Sbjct: 95 ARPHKVDGRVVE 106
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 41.2 bits (95), Expect = 0.002 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++ D+ + K RG+AF+ + Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY- 527 + LF+ L++ET++ ++ FE +G + ++ D T + RG+ F+ Y ++ A Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94 Query: 528 ---KQADGRKVD 554 + DGR V+ Sbjct: 95 ARPHKVDGRVVE 106
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 41.2 bits (95), Expect = 0.002 Identities = 18/66 (27%), Positives = 38/66 (57%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L + +++ + FE+ G ++ V ++ DK T + RG+ F+ +++ A +Q Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152 Query: 537 DGRKVD 554 +G ++D Sbjct: 153 NGYELD 158
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Frame = +3 Query: 291 AKELQNYNPQSDPNTTSDPYKT--LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDT 464 A+ELQ P + + KT LF+ + Y ++E K+ F YG +K V + D T Sbjct: 304 AEELQEEIPDEE-QAIAKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRT 362 Query: 465 NKPRGYAFIEYMHTRDMKNAYKQAD 539 +G+A++ + + AY + D Sbjct: 363 GNSKGFAYVLFAKPEEAVQAYIELD 387 Score = 37.7 bits (86), Expect = 0.022 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 + V L +E + V F ++G +K VR V K RG+AF+E++ ++ +NA Q Sbjct: 740 IIVKNLPFEATRKDVFELFNSFGQLKSVR-VPKKFDKSARGFAFVEFVLPKEAENAMDQL 798 Query: 537 DG 542 G Sbjct: 799 QG 800
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 41.2 bits (95), Expect = 0.002 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ FE YG I+ + ++ D+ + K RG+AF+ + Sbjct: 126 KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTF 174 Score = 40.4 bits (93), Expect = 0.003 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAY- 527 + LF+ L++ET++ ++ FE +G + ++ D T + RG+ F+ Y ++ A Sbjct: 35 RKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMC 94 Query: 528 ---KQADGRKVD 554 + DGR V+ Sbjct: 95 ARPHKVDGRVVE 106
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/68 (30%), Positives = 37/68 (54%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +TL+V + EFE +GP+ R + + T R +AF+EY +RD ++AY Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPR-TRTSRPFAFVEYEDSRDAEDAYY 65 Query: 531 QADGRKVD 554 + GR+++ Sbjct: 66 EVHGRRLE 73
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%) Frame = +3 Query: 270 EQGADKVAKELQNYNPQSDPNTTSDPYKT-------LFVARLNYETSESRVKREFEAYGP 428 EQ A++ A++ PQ D + + T LF+ + Y+ +E K+ F YG Sbjct: 270 EQAAEEPAEQEV---PQEDEVSAEEAALTKIRATGRLFLRNILYDATEEDFKQLFSPYGE 326 Query: 429 IKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 ++ V + D T + +G+A++ + NAY + D Sbjct: 327 LEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELD 363 Score = 37.0 bits (84), Expect = 0.038 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 + V L +E + V F ++G +K VR V K RG+AF+E++ + +NA Q Sbjct: 714 IIVKNLPFEATRKDVFELFSSFGQLKSVR-VPKKFDKSARGFAFVEFLLPSEAENAMDQL 772 Query: 537 DG 542 G Sbjct: 773 QG 774 Score = 32.3 bits (72), Expect = 0.93 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 5/85 (5%) Frame = +3 Query: 315 PQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVT-----DKDTNKPRG 479 P S+ P ++FV LN+ T+ +++ +F+ + ++ T + D G Sbjct: 600 PSSEATAIDGPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMG 659 Query: 480 YAFIEYMHTRDMKNAYKQADGRKVD 554 + FIE+ DG +D Sbjct: 660 FGFIEFRTKEQAGAVIAAMDGAVID 684
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Frame = +3 Query: 312 NPQSDPNTTS---DPYKTLFVARLNYETSESRVKREFE-AYGPIKRVRLVTDKDTNKPRG 479 +P SD S D TL + ++N E+ ++ E + PI RV +V +K+T K RG Sbjct: 175 DPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPFAPIPRVSVVRNKETGKSRG 234 Query: 480 YAFIEYMHTRDMKNAYKQADGR 545 AF+ + + A + DGR Sbjct: 235 LAFVTFSSEEVAEQALRFLDGR 256
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.8 bits (94), Expect = 0.003 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV L+ T+ VK+ FE +G + L+ DK TN+ RG+ F+ + Sbjct: 109 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 T++V L++ TSE ++ F G IKR+ + D+ P G+ FI Y + NA K Sbjct: 47 TIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFCFIIYSCPDEALNALKY 106 Query: 534 ADGRKVD 554 K+D Sbjct: 107 LSDTKLD 113
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 40.8 bits (94), Expect = 0.003 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLK-----LEQGADKVAKELQNYNPQSDPNTTSDP 347 E G ++A E+ + K++ +K K E+G+ A+ ++Y+ P Sbjct: 9 EAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSR--ARMREDYDSVEQDGDEPGP 66 Query: 348 YKT-----LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 ++ LFV ++ E +E + +F YG IK + L D+ T +GY +EY ++ Sbjct: 67 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 126 Query: 513 MKNAYKQADGR 545 + A + +G+ Sbjct: 127 AQAAMEGLNGQ 137
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 40.8 bits (94), Expect = 0.003 Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 10/131 (7%) Frame = +3 Query: 183 EPGDPEYAPPVPTCETKAEKKDRIRKLK-----LEQGADKVAKELQNYNPQSDPNTTSDP 347 E G ++A E+ + K++ +K K E+G+ A+ ++Y+ P Sbjct: 9 EAGGEDFAMDEDGDESIHKLKEKAKKRKGRGFGSEEGSR--ARMREDYDSVEQDGDEPGP 66 Query: 348 YKT-----LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 ++ LFV ++ E +E + +F YG IK + L D+ T +GY +EY ++ Sbjct: 67 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKE 126 Query: 513 MKNAYKQADGR 545 + A + +G+ Sbjct: 127 AQAAMEGLNGQ 137
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L + T+ + F YG I L + T +P G AF+++ + D AYK Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282 Query: 537 D 539 D Sbjct: 283 D 283 Score = 33.9 bits (76), Expect = 0.32 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 5/102 (4%) Frame = +3 Query: 264 KLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVR 443 K E+ A +A+++++ Q DP T + TLF+ LN+ T+ ++ R Sbjct: 508 KREEEAKALAEKVESLPEQPDP--TDEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFAR 565 Query: 444 LVTDKDTNKP-----RGYAFIEYMHTRDMKNAYKQADGRKVD 554 + D +P GY F+ + A K +G ++D Sbjct: 566 VQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEID 607
>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS) Length = 269 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ RLN E V+R F+ YG I+ D + RG+ F+E+ RD +A + Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIR--------DIDLKRGFGFVEFEDPRDADDAVYEL 57 Query: 537 DGRKV 551 DG+++ Sbjct: 58 DGKEL 62
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +TLFV L + +E + F GP+ +V++ DKD KP+ +AF+ + H + A Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMN 68 Query: 531 QADGRKV 551 +G K+ Sbjct: 69 LLNGIKL 75
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Frame = +3 Query: 201 YAPPVPTCETKAEKKDR-IRKLKLEQGADKVAKELQNYNPQSDP--NTTSDPYKTLFVAR 371 +A C + AE R +R + + + ++ S P + P LFV Sbjct: 46 FASSALKCSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGN 105 Query: 372 LNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADG 542 L++ +++ + FE+ G ++ V ++ DK T + RG+ F+ +++ A +Q +G Sbjct: 106 LSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ RLN E V+R F+ YG I+ D + RG+ F+E+ RD +A + Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIR--------DIDLKRGFGFVEFEDPRDADDAVYEL 57 Query: 537 DGRKV 551 DG+++ Sbjct: 58 DGKEL 62
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ- 533 +F+ LN++T+E ++ F YG + ++++ D T + RG+ F+ + + K Sbjct: 161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 220 Query: 534 --ADGRKVD 554 DG+ +D Sbjct: 221 HILDGKVID 229 Score = 34.7 bits (78), Expect = 0.19 Identities = 16/57 (28%), Positives = 26/57 (45%) Frame = +3 Query: 327 PNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 P D +FV + + + F +G I +L+ DKDT + RG+ F+ Y Sbjct: 235 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY 291
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 40.4 bits (93), Expect = 0.003 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%) Frame = +3 Query: 189 GDPEYAPPVPTCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKT--LF 362 G+PE E+K+E K K + A K A + P DP S KT LF Sbjct: 253 GEPEEDRENRHTESKSEGK------KGKGNAPKAATPVDE-EPSEDPTIVSIR-KTGRLF 304 Query: 363 VARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADG 542 + L Y E ++ F YG ++ V L + T + +G+A +++ + AY+ DG Sbjct: 305 LRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDG 364 Query: 543 R 545 + Sbjct: 365 K 365 Score = 38.9 bits (89), Expect = 0.010 Identities = 19/62 (30%), Positives = 36/62 (58%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 + + L +E ++ V++ F A+G +K VR V K ++ RG+AF EY+ ++ ++A Sbjct: 705 ILIKNLPFEATKKDVQKLFGAFGSLKTVR-VPKKFNSESRGFAFAEYVSAKEAEHAMSAL 763 Query: 537 DG 542 G Sbjct: 764 QG 765
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/111 (22%), Positives = 52/111 (46%) Frame = +3 Query: 219 TCETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESR 398 TC + ++ + +++ E+ A +E + + + S L+V L + + S+ Sbjct: 70 TCASVSDGVEVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQ 129 Query: 399 VKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 + F G + V +V D+ T++ RG+AF+ + K A + DG +V Sbjct: 130 LSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQV 180
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV L+ T+ VK FE +G + L+ DK TN+ RG+ F+ + Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV L+ T+ VK FE +G + L+ DK TN+ RG+ F+ + Sbjct: 109 KKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF 157
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/66 (31%), Positives = 31/66 (46%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +FV + S + F YGPI ++L+ DK +P GY FI Y K+ Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 537 DGRKVD 554 +GR V+ Sbjct: 257 NGRTVN 262
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/67 (31%), Positives = 36/67 (53%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +TLFV L + +E + F GP+ +V++ DKD KP+ +AF+ + H + A Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMN 68 Query: 531 QADGRKV 551 +G K+ Sbjct: 69 LLNGIKL 75
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQ 533 TLFV RL +++ F GP+K+ +VT+K + RG+ ++ + D++ A K+ Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 63
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = +3 Query: 309 YNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 + +S ++P T +V L + T + + F+ I+ VRLV DKDT+K +G+ + Sbjct: 27 HGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCY 85 Query: 489 IEYMHTRDMKNA 524 +E+ +K A Sbjct: 86 VEFDEVDSLKEA 97
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = +3 Query: 309 YNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 + +S ++P T +V L + T + + F+ I+ VRLV DKDT+K +G+ + Sbjct: 27 HGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCY 85 Query: 489 IEYMHTRDMKNA 524 +E+ +K A Sbjct: 86 VEFDEVDSLKEA 97
>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 272 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/65 (32%), Positives = 35/65 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ RLN E V+R F+ YG I+ D + RG+ F+E+ RD +A + Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIR--------DIDLKRGFGFVEFEDPRDADDAVYEL 57 Query: 537 DGRKV 551 DG+++ Sbjct: 58 DGKEL 62
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = +3 Query: 315 PQSDPNTTSDPYKT--LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 P+ D N + T L+V+ + + +E + F YG + + ++ DK T KPRG+ F Sbjct: 100 PRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGF 159 Query: 489 IEY 497 + + Sbjct: 160 VTF 162 Score = 39.7 bits (91), Expect = 0.006 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Frame = +3 Query: 297 ELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPR 476 E++ N D + + + +FV L T++ ++ + +G I + ++ D T + R Sbjct: 5 EIKAENGSGDASLEPENLRKIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSR 64 Query: 477 GYAFIEYMHTRDMKNAYKQ----ADGRKVD 554 G+ F+ + ++ A KQ DG+ VD Sbjct: 65 GFGFVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV L+ T VK+ FE +G ++ L+ DK TN+ RG+ F+ + Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +3 Query: 309 YNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 Y P D LF+ L ++ +VK ++GP+K LV D T +GYAF Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304 Query: 489 IEYM 500 EY+ Sbjct: 305 CEYV 308
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 40.0 bits (92), Expect = 0.004 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +3 Query: 309 YNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 Y P D LF+ L ++ +VK ++GP+K LV D T +GYAF Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304 Query: 489 IEYM 500 EY+ Sbjct: 305 CEYV 308
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 + LF+ L++ET++ ++ FE +G + ++ D T + RG+ F+ Y ++ +A Sbjct: 27 RKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DASM 85 Query: 531 QADGRKVD 554 A KVD Sbjct: 86 SARPHKVD 93 Score = 38.9 bits (89), Expect = 0.010 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV + +T E ++ E+YG I+ + ++ D+ + K RG+AF+ + Sbjct: 118 KKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTF 166
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKP-RGYAFIE 494 ++D + Y L++ L+ + SE ++ +F +G I V L KD N+ RGYAF+ Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVN 247 Query: 495 YMHTRDMKNAYKQADGRK 548 + + D + A + +G K Sbjct: 248 FDNPEDARRAAETVNGTK 265
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/55 (29%), Positives = 33/55 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ E+ ++ F YG +K V+++TD+ T +GY F+ + + D++ Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQ 94
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 40.0 bits (92), Expect = 0.004 Identities = 16/55 (29%), Positives = 33/55 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ E+ ++ F YG +K V+++TD+ T +GY F+ + + D++ Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFNDVDVQ 94
>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) (X16 protein) Length = 164 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 ++V L +++ ++R F YGP++ V + + P G+AF+E+ RD +A ++ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66 Query: 537 DGR 545 DGR Sbjct: 67 DGR 69
>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing| factor SRP20) Length = 164 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/63 (30%), Positives = 36/63 (57%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 ++V L +++ ++R F YGP++ V + + P G+AF+E+ RD +A ++ Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVREL 66 Query: 537 DGR 545 DGR Sbjct: 67 DGR 69
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/83 (21%), Positives = 39/83 (46%) Frame = +3 Query: 294 KELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKP 473 +E ++ S + D ++V L + + ++ F G + ++V D+D+ + Sbjct: 175 RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRS 234 Query: 474 RGYAFIEYMHTRDMKNAYKQADG 542 RG+ F+ Y ++ NA + DG Sbjct: 235 RGFGFVTYSSAEEVNNAIESLDG 257 Score = 38.5 bits (88), Expect = 0.013 Identities = 21/94 (22%), Positives = 45/94 (47%) Frame = +3 Query: 273 QGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVT 452 + D+ +E +N++P +FV L + + + FE G ++ V ++ Sbjct: 71 EDGDEGVEEERNFSPDLK----------IFVGNLLFSADSAALAELFERAGNVEMVEVIY 120 Query: 453 DKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 DK T + RG+ F+ +++ A +Q +G ++D Sbjct: 121 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELD 154
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q P + S +FV + + E+ ++ F+ +G + V ++ D + +PRG+ FI + Sbjct: 102 QKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF 161 Query: 498 MHTRDMKNA----YKQADGRKVD 554 + + A + G+KV+ Sbjct: 162 EDEQSVDQAVNMHFHDIMGKKVE 184 Score = 39.7 bits (91), Expect = 0.006 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +3 Query: 339 SDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 +D LFV L++ T++ ++ F YG + ++ DK TN+ RG+ F+++ + Sbjct: 6 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 65 Query: 519 NAYKQ----ADGRKVD 554 DGR +D Sbjct: 66 TVLASRPHTLDGRNID 81
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 40.0 bits (92), Expect = 0.004 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K +FV L+ T VK+ FE +G ++ L+ DK TN+ RG+ F+ + Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 39.7 bits (91), Expect = 0.006 Identities = 20/63 (31%), Positives = 35/63 (55%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 + +FV YET +S ++R F+ YG + RV + + GYAF+ + RD ++A + Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFEDERDAEDAIR 53 Query: 531 QAD 539 + D Sbjct: 54 KLD 56
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 39.7 bits (91), Expect = 0.006 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Frame = +3 Query: 312 NPQSDPNT---TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGY 482 N QS N + P + +++ + Y+ +E ++ GP+ ++++ D T + +GY Sbjct: 2 NRQSGVNAGVQNNPPSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY 61 Query: 483 AFIEYMHTRDMKNAYKQADG 542 AFIE+ +A + +G Sbjct: 62 AFIEFRDLESSASAVRNLNG 81
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 39.7 bits (91), Expect = 0.006 Identities = 17/63 (26%), Positives = 34/63 (53%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 +S P +L+V L+ + +E+ + +F GP+ +R+ D T + GYA++ + D Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65 Query: 516 KNA 524 + A Sbjct: 66 ERA 68 Score = 31.6 bits (70), Expect = 1.6 Identities = 18/75 (24%), Positives = 33/75 (44%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++V D+ N +GYAF+ + Sbjct: 88 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHF 145 Query: 498 MHTRDMKNAYKQADG 542 A ++ +G Sbjct: 146 ETQEAADKAIEKMNG 160
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 39.7 bits (91), Expect = 0.006 Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNY---------NPQSDPNTTSDPYKTLFVARLN 377 E K+E D + L+ +QGA+ + + Y +T S KTL ++ L+ Sbjct: 436 EFKSEA-DAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLS 494 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 Y ++ ++ FE IK V KP+GYAFIE+ D K A + +++ Sbjct: 495 YSATKETLEEVFEKATFIK----VPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIE 549
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 39.7 bits (91), Expect = 0.006 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%) Frame = +3 Query: 267 LEQGADKVAKELQNYNPQSDPNTTSD----PYKTLFVARLNYETSESR----VKREFEAY 422 L+ D V +E + +T+++ P +FVA L S+ V F+ Y Sbjct: 61 LQDPEDDVDEESTGRGTVTTTSTSTESRGRPSSCIFVASLAAALSDDELCLSVTENFKKY 120 Query: 423 GPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADG 542 G + RV+++ D N R YAF++Y + D K+A +A G Sbjct: 121 GDLARVKVLRD---NANRPYAFVQYNNDHDAKHALIRAQG 157
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 39.7 bits (91), Expect = 0.006 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGAD-KVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRV 401 E K+ K R L L D + K++Q + T P L+V L E ++ Sbjct: 3 EGKSSDKPAKRLLALNPKEDAEFQKKVQQVKKRPQTGQTLSP-GVLYVGHLPRGLFEPQL 61 Query: 402 KREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 K FE +G + R+R+ K T +GY F+E+ Sbjct: 62 KSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEF 93
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 39.7 bits (91), Expect = 0.006 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P LFV +LN T + ++ F +G I ++ D+ T YAFIEY + A Sbjct: 249 PENVLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAA 308 Query: 525 YKQADGRKVD 554 Y + G +D Sbjct: 309 YFKMQGVLID 318
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 39.3 bits (90), Expect = 0.008 Identities = 23/70 (32%), Positives = 32/70 (45%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P LFV +LN T ++ F +G I ++ DK T YAFIE+ D + A Sbjct: 260 PENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAERA 319 Query: 525 YKQADGRKVD 554 Y + VD Sbjct: 320 YFKMQNVLVD 329
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 39.3 bits (90), Expect = 0.008 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 LF+ LN +TSES ++ FEA+G + +V + T + R + F+ Y + + Sbjct: 9 LFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEE 60 Score = 37.7 bits (86), Expect = 0.022 Identities = 14/51 (27%), Positives = 28/51 (54%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMH 503 K LFV L + +E + F +G +++ ++ DK + K RG+ F+ + + Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQN 148
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 39.3 bits (90), Expect = 0.008 Identities = 16/71 (22%), Positives = 37/71 (52%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 D ++V L++ + +K F G + ++V D+D+ + RG+ F+ Y ++++ + Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263 Query: 522 AYKQADGRKVD 554 A +G +D Sbjct: 264 AIDSLNGVDLD 274 Score = 38.5 bits (88), Expect = 0.013 Identities = 18/66 (27%), Positives = 35/66 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L + + + FE G ++ V ++ DK T + RG+ F+ +++ A +Q Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148 Query: 537 DGRKVD 554 +G ++D Sbjct: 149 NGYEID 154
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 39.3 bits (90), Expect = 0.008 Identities = 14/66 (21%), Positives = 37/66 (56%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ L++ T ++ ++ F +G + +++ D++T + RG+ F+ + A + Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96 Query: 537 DGRKVD 554 DG++++ Sbjct: 97 DGKELN 102
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 39.3 bits (90), Expect = 0.008 Identities = 19/70 (27%), Positives = 36/70 (51%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 D ++V L + ++R F YGP++ V + + P G+AF+E+ RD ++ Sbjct: 37 DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAED 91 Query: 522 AYKQADGRKV 551 A + DG+ + Sbjct: 92 AVRGLDGKVI 101
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +3 Query: 339 SDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD 512 S+ +T++V L E +E + F +G I +++ D ++ + RG+AFIEY + D Sbjct: 2 SNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSED 59
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 39.3 bits (90), Expect = 0.008 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P +L+V L+ + +E+ + +F GPI +R+ D T + GYA+I + D + A Sbjct: 9 PLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERA 68 Score = 33.1 bits (74), Expect = 0.54 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L+V L+ + R+++EF YG I +++T+ +K G+ F+ + + A + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEM 353 Query: 537 DGRKV 551 +GR V Sbjct: 354 NGRIV 358
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 38.9 bits (89), Expect = 0.010 Identities = 17/60 (28%), Positives = 32/60 (53%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P +L++ L+ + +E+ + +F GPI +R+ D T + GYA+I + D + A Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERA 68 Score = 33.1 bits (74), Expect = 0.54 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L+V L+ + R+++EF YG I +++T+ +K G+ F+ + + A + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSK--GFGFVCFSSPEEATKAVTEM 353 Query: 537 DGRKV 551 +GR V Sbjct: 354 NGRIV 358
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 3/89 (3%) Frame = +3 Query: 285 KVAKELQNYNPQSDPNTTSDPYKT---LFVARLNYETSESRVKREFEAYGPIKRVRLVTD 455 K+ +L + NT + K + V L +E + V F ++G +K VR V Sbjct: 738 KIQLKLSHRQASQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVR-VPK 796 Query: 456 KDTNKPRGYAFIEYMHTRDMKNAYKQADG 542 K RG+AF+E++ ++ +NA Q G Sbjct: 797 KFDKSARGFAFVEFLLPKEAENAMDQLHG 825 Score = 38.9 bits (89), Expect = 0.010 Identities = 15/61 (24%), Positives = 34/61 (55%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LF+ + Y + E ++ F +G ++ V + D T + +G+A++ + +++ NAY + Sbjct: 347 LFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVEL 406 Query: 537 D 539 D Sbjct: 407 D 407
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 38.9 bits (89), Expect = 0.010 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Frame = +3 Query: 285 KVAKELQNYNPQSDPNTTSDPYKT----LFVARLNYETSESRVKREFEAYGPIKRVRLVT 452 K+ +L + S N +S K + V L +E + V F ++G +K VR V Sbjct: 726 KLQLKLSHRQGTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVR-VP 784 Query: 453 DKDTNKPRGYAFIEYMHTRDMKNAYKQADG 542 K RG+AF+E++ ++ +NA Q G Sbjct: 785 KKFDKSARGFAFVEFLLPKEAENAMDQLQG 814 Score = 37.7 bits (86), Expect = 0.022 Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 18/113 (15%) Frame = +3 Query: 255 RKLKLEQGADK-VAKELQNYNP-QSDPNTT-------SDPYKTL---------FVARLNY 380 R+++++ GAD V+K+ Q + Q P T S+ K+L F+ + Y Sbjct: 280 RRVRIKDGADTPVSKQQQQPDTEQQQPEETEVETSQESEEEKSLKKIRETGRLFLRNILY 339 Query: 381 ETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQAD 539 +E ++ F YG ++ V + D T + +G+A++ + + + A+ + D Sbjct: 340 TATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELD 392
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 38.9 bits (89), Expect = 0.010 Identities = 18/65 (27%), Positives = 35/65 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 ++V L + ++R F YGP++ V + + P G+AF+E+ RD ++A + Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGL 67 Query: 537 DGRKV 551 DG+ + Sbjct: 68 DGKVI 72
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 38.9 bits (89), Expect = 0.010 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = +3 Query: 267 LEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRL 446 +E+ + V N + Q+D KTLFV + + ++ ++ F + PIK + Sbjct: 1 MEETIENVEVPSSNVSKQNDDGLDM---KTLFVRSIPQDVTDEQLADFFSNFAPIKHAVV 57 Query: 447 VTDKDTNK-PRGYAFIEYMHTRDMKNAYKQA 536 V KDTNK RG+ F+ + D K A +A Sbjct: 58 V--KDTNKRSRGFGFVSFAVEDDTKEALAKA 86
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 38.9 bits (89), Expect = 0.010 Identities = 16/71 (22%), Positives = 36/71 (50%) Frame = +3 Query: 342 DPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKN 521 D ++V L++ + +K F G + ++V D+D+ + RG+ F+ Y +++ + Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264 Query: 522 AYKQADGRKVD 554 A +G +D Sbjct: 265 AIDSLNGIDLD 275 Score = 36.2 bits (82), Expect = 0.064 Identities = 17/66 (25%), Positives = 35/66 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 LFV L + + + FE G ++ V ++ DK + + RG+ F+ +++ A +Q Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149 Query: 537 DGRKVD 554 +G ++D Sbjct: 150 NGYEID 155
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/59 (40%), Positives = 30/59 (50%) Frame = +3 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 YE VK E + YGP+ V L+ K+ N RG F+EY + D K A K GR D Sbjct: 340 YEDVVEDVKEECQKYGPV--VSLLVPKE-NPGRGQVFVEYANAGDSKAAQKLLTGRMFD 395
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/59 (40%), Positives = 30/59 (50%) Frame = +3 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 YE VK E + YGP+ V L+ K+ N RG F+EY + D K A K GR D Sbjct: 340 YEDVVEDVKEECQKYGPV--VSLLVPKE-NPGRGQVFVEYANAGDSKAAQKLLTGRMFD 395
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/59 (40%), Positives = 30/59 (50%) Frame = +3 Query: 378 YETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 YE VK E + YGP+ V L+ K+ N RG F+EY + D K A K GR D Sbjct: 340 YEDVVEDVKEECQKYGPV--VSLLVPKE-NPGRGQVFVEYANAGDSKAAQKLLTGRMFD 395
>P2OX_EMENI (Q5B2E9) Pyranose 2-oxidase (EC 1.1.3.10) (P2Ox) (Pyranose oxidase)| (PROD) (POD) (POx) (Pyranose:oxygen 2-oxidoreductase) (Glucose 2-oxidase) (FAD-oxidoreductase) Length = 591 Score = 38.5 bits (88), Expect = 0.013 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Frame = +3 Query: 117 PPVQKRKLP--AYTGMAQFVSR----FAEPGDPEYAPPVPTCETKAEKKDRIRKLKLEQG 278 P + KR + Y G A+ R F++ Y P PT + K KDR+ ++ Q Sbjct: 409 PAIDKRTIVDLRYFGRAETQWRNRVTFSKKLTDAYGMPQPTFDFKLSTKDRLESHRMMQD 468 Query: 279 ADKVAKELQNYNPQSDP 329 +KVA EL Y P S+P Sbjct: 469 MEKVAGELGGYLPGSEP 485
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 38.5 bits (88), Expect = 0.013 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEA-YGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 ++FV L+ +E V F + Y K +++TD TN RGY F+ + D K+A Sbjct: 187 SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALA 246 Query: 531 QADGR 545 + G+ Sbjct: 247 EMQGQ 251 Score = 35.8 bits (81), Expect = 0.084 Identities = 29/145 (20%), Positives = 57/145 (39%) Frame = +3 Query: 90 EARPMLEHKPPVQKRKLPAYTGMAQFVSRFAEPGDPEYAPPVPTCETKAEKKDRIRKLKL 269 E P H ++ + PA T + F E D E + + + +D I + Sbjct: 9 EILPKESHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSNDEPVQSQDPISP-NM 67 Query: 270 EQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLV 449 ++ NY D N TL++ L +E+ +++ + G +V+L+ Sbjct: 68 ASNESGNSENTSNYGSSRDENVYQKT--TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLI 125 Query: 450 TDKDTNKPRGYAFIEYMHTRDMKNA 524 ++ T GY F+E+ + +A Sbjct: 126 RNRYTGMNAGYCFVEFASPHEASSA 150
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 38.5 bits (88), Expect = 0.013 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Frame = +3 Query: 237 EKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKT---LFVARLNYETSESRVKR 407 +K+ +R L G V + Q P S P + +F+ +L + E + Sbjct: 15 QKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDSTPPERGCEIFIGKLPRDLFEDELIP 74 Query: 408 EFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 E G I +RL+ D + N RGYAF+ + + ++ KNA KQ + ++ Sbjct: 75 LCEKIGKIYEMRLMMDFNGNN-RGYAFVTFSNKQEAKNAIKQLNNYEI 121 Score = 37.7 bits (86), Expect = 0.022 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAY--GPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 T K L+V L TSE +++EF + G ++RV+ K R YAF+ + + Sbjct: 226 TMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVK--------KIRDYAFVHFSNRE 277 Query: 510 DMKNAYKQADGRKVD 554 D A K +G+ +D Sbjct: 278 DAVEAMKALNGKVLD 292
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 38.1 bits (87), Expect = 0.017 Identities = 29/110 (26%), Positives = 51/110 (46%) Frame = +3 Query: 225 ETKAEKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVK 404 ET+ + +D I+ L ++ A +++ + PNT P +FV L +T V+ Sbjct: 48 ETEQQGRDAIQNLN-GYTLNEFAIKVEAAKSRRAPNT---PTTKIFVGNLTDKTRAPEVR 103 Query: 405 REFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F+ YG + +V R Y F+ D+++A K+ +GR VD Sbjct: 104 ELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKELNGRVVD 145
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 38.1 bits (87), Expect = 0.017 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +++ RL+Y+ E V+R F+ YG I V L GY F+E+ RD +A + Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55 Query: 537 DGR 545 +G+ Sbjct: 56 NGK 58
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 38.1 bits (87), Expect = 0.017 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Frame = +3 Query: 234 AEKKDRIRKLKLEQGADKVAKELQN-YNPQSDPNTTSDPYKTLFVARLNYETSESRVKRE 410 ++ K IRK + K K + N S + + V+ L + +E++VK Sbjct: 15 SKPKGGIRKRRARSNKPKPTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKEL 74 Query: 411 F-EAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F ++ GP KRV L + + +G A I + D AY+Q +GR VD Sbjct: 75 FVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRPGDATRAYEQYEGRLVD 122
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 38.1 bits (87), Expect = 0.017 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +++ RL+Y+ E V+R F+ YG I V L GY F+E+ RD +A + Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYEL 55 Query: 537 DGR 545 +G+ Sbjct: 56 NGK 58
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 38.1 bits (87), Expect = 0.017 Identities = 18/64 (28%), Positives = 34/64 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 ++V L S+ ++ F YGP++ V + + P G+AF+E+ RD ++A + Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN-----PPGFAFVEFEDRRDAEDATRAL 67 Query: 537 DGRK 548 DG + Sbjct: 68 DGTR 71
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 37.7 bits (86), Expect = 0.022 Identities = 18/65 (27%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +++ RL+Y E ++R F YG + V L GY F+E+ +RD +A + Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDL--------KNGYGFVEFEDSRDADDAVYEL 55 Query: 537 DGRKV 551 +G+++ Sbjct: 56 NGKEL 60
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 37.7 bits (86), Expect = 0.022 Identities = 19/65 (29%), Positives = 37/65 (56%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +FV ++ +T+E+ + R F AYG +K +++ D+ +GY F+ + ++ + QA Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRL--QA 91 Query: 537 DGRKV 551 DG V Sbjct: 92 DGECV 96
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 37.7 bits (86), Expect = 0.022 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAY--GPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 T K L+V L TSE +++EF + G ++RV+ K R YAF+ + + Sbjct: 226 TMSSVKILYVRNLMLSTSEEMIEKEFNSIKPGAVERVK--------KIRDYAFVHFSNRE 277 Query: 510 DMKNAYKQADGRKVD 554 D A K +G+ +D Sbjct: 278 DAVEAMKALNGKVLD 292 Score = 36.6 bits (83), Expect = 0.049 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Frame = +3 Query: 237 EKKDRIRKLKLEQGADKVAKELQNYNPQSDPNTTSDPYKT---LFVARLNYETSESRVKR 407 +K+ +R L G V + Q P + P + +F+ +L + E + Sbjct: 15 QKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDTTPPERGCEIFIGKLPRDLFEDELIP 74 Query: 408 EFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 E G I +R++ D + N RGYAF+ + + ++ KNA KQ + ++ Sbjct: 75 LCEKIGKIYEMRMMMDFNGNN-RGYAFVTFSNKQEAKNAIKQLNNYEI 121
>DRBP1_RAT (Q8CFD1) Developmentally-regulated RNA-binding protein 1| Length = 476 Score = 37.7 bits (86), Expect = 0.022 Identities = 19/67 (28%), Positives = 36/67 (53%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P +F+ Y TSES ++ F +G I+ + +V DK T + +G AF+++ + A Sbjct: 24 PNSRIFLVISKY-TSESVLREHFSPFGDIQDIWVVRDKHTKESKGIAFVKFARSSQACRA 82 Query: 525 YKQADGR 545 ++ G+ Sbjct: 83 MEEMHGQ 89
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 37.4 bits (85), Expect = 0.029 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Frame = +3 Query: 327 PNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRV----RLVTDKDTNKPRGYAFIE 494 P +D ++ +FV RL+ T +S ++ FE G +++V R V P G AF+ Sbjct: 37 PAQQADDFR-VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVT 95 Query: 495 YMHTRDMKNAYKQADGRKVD 554 + + D+ A + +G+ +D Sbjct: 96 FNNQEDVDKAIETLNGKTLD 115 Score = 37.0 bits (84), Expect = 0.038 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 14/106 (13%) Frame = +3 Query: 276 GADKVAKELQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGP--------- 428 G DK E++ P +++V+ L+ + +K F+AY P Sbjct: 180 GVDKKQNEIKGKGGSGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRS 239 Query: 429 -----IKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKV 551 I+R++L ++ + RG+ F+ + + D A ++ +G++V Sbjct: 240 LPPYIIRRIKLRGEQ--RRGRGFGFVSFANAEDQSRAIEEMNGKQV 283
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 37.4 bits (85), Expect = 0.029 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 5/108 (4%) Frame = +3 Query: 222 CETKAEKKDRIR----KLKLEQGADKVAK-ELQNYNPQSDPNTTSDPYKTLFVARLNYET 386 C +K+ R R K K G+D V + EL N SD N S KT+ V L +T Sbjct: 269 CGLHFDKEVRTRPEFTKRKKMIGSDIVIEDELLASNNLSD-NARS---KTILVKNLPSDT 324 Query: 387 SESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 ++ V F GPIK V +++K N P AF+ Y + + K A K Sbjct: 325 TQEEVLDYFSTIGPIKSV-FISEKQANTPH-KAFVTYKNEEESKKAQK 370
>PPIL4_CRYNE (Q5KNY5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 504 Score = 37.4 bits (85), Expect = 0.029 Identities = 22/70 (31%), Positives = 32/70 (45%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P LFV +LN T + ++ F +G I +V DK + YAFIE+ + A Sbjct: 244 PENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQYAFIEFDEREAAEQA 303 Query: 525 YKQADGRKVD 554 Y + VD Sbjct: 304 YFKMQNVLVD 313
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 37.4 bits (85), Expect = 0.029 Identities = 18/75 (24%), Positives = 35/75 (46%) Frame = +3 Query: 300 LQNYNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 L PQS P + + LFV+ + E +++ F +G + VR++ + T RG Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143 Query: 480 YAFIEYMHTRDMKNA 524 + F+ + + +A Sbjct: 144 FGFLSFSTVEEATSA 158
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 37.0 bits (84), Expect = 0.038 Identities = 12/48 (25%), Positives = 29/48 (60%) Frame = +3 Query: 411 FEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQADGRKVD 554 F YG + +++ D++T + RG+ F+ + M++A + +G+++D Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELD 54
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 37.0 bits (84), Expect = 0.038 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ L ET E+ + + F +G ++ V++V D TN+ +GY F+ + + A + Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463 Query: 537 DG 542 +G Sbjct: 464 NG 465
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 37.0 bits (84), Expect = 0.038 Identities = 17/62 (27%), Positives = 34/62 (54%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ L ET E+ + + F +G ++ V++V D TN+ +GY F+ + + A + Sbjct: 440 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 499 Query: 537 DG 542 +G Sbjct: 500 NG 501
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 37.0 bits (84), Expect = 0.038 Identities = 17/65 (26%), Positives = 36/65 (55%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 ++V L + + ++ F+ +G I++V + +P G+AF+EY RD ++A + Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVEYDDVRDAEDAVRAL 59 Query: 537 DGRKV 551 DG ++ Sbjct: 60 DGSRI 64
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 36.6 bits (83), Expect = 0.049 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 L+V L+ ++ +++ F YG I + ++ DK T PRG AFI + + + A Sbjct: 166 LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEA 221 Score = 30.4 bits (67), Expect = 3.5 Identities = 17/69 (24%), Positives = 28/69 (40%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDM 515 T++ L V L + + + F GPI R++ D T GY F+++ D Sbjct: 73 TNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADA 132 Query: 516 KNAYKQADG 542 A +G Sbjct: 133 LRAINNLNG 141
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 36.6 bits (83), Expect = 0.049 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAY--GPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 T K L+V L TSE +++EF G ++RV+ K R YAF+ + + Sbjct: 226 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRE 277 Query: 510 DMKNAYKQADGRKVD 554 D A K +G+ +D Sbjct: 278 DAVEAMKALNGKVLD 292 Score = 34.7 bits (78), Expect = 0.19 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ +L + E + E G I +R++ D + N RGYAF+ + + + KNA KQ Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNN-RGYAFVTFSNKVEAKNAIKQL 116 Query: 537 DGRKV 551 + ++ Sbjct: 117 NNYEI 121
>IF39_ARATH (Q9C5Z1) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p110) (eIF3b) (p82) Length = 712 Score = 36.6 bits (83), Expect = 0.049 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = +3 Query: 363 VARLNYETSESRVKREFEAYGPIKR--VRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 V + +E E VK+ + G IK + + D DT GY FIE+ ++ +NA +++ Sbjct: 66 VPKEKFEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKS 125 Query: 537 DGRKVD 554 G K+D Sbjct: 126 HGYKLD 131
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 36.6 bits (83), Expect = 0.049 Identities = 20/67 (29%), Positives = 35/67 (52%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 +TLFV L + +E + F GP+ +V++ DKD K + +AF+ + H + A Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMN 68 Query: 531 QADGRKV 551 +G K+ Sbjct: 69 LLNGIKL 75
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 36.6 bits (83), Expect = 0.049 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = +3 Query: 345 PYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 P +L++ L+ + +E+ + +F GPI +R+ D T + YA+I + D + A Sbjct: 9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERA 68 Score = 32.0 bits (71), Expect = 1.2 Identities = 17/65 (26%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L+V L+ + R+++EF YG I +++T+ +K G+ F+ + + A + Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSK--GFGFVCFSSPEEATKAVTEM 353 Query: 537 DGRKV 551 +GR V Sbjct: 354 NGRIV 358
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 36.6 bits (83), Expect = 0.049 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +3 Query: 336 TSDPYKTLFVARLNYETSESRVKREFEAY--GPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 T K L+V L TSE +++EF G ++RV+ K R YAF+ + + Sbjct: 226 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVK--------KIRDYAFVHFSNRE 277 Query: 510 DMKNAYKQADGRKVD 554 D A K +G+ +D Sbjct: 278 DAVEAMKALNGKVLD 292 Score = 35.0 bits (79), Expect = 0.14 Identities = 19/65 (29%), Positives = 35/65 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +F+ +L + E + E G I +R++ D + N RGYAF+ + + + KNA KQ Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFNGNN-RGYAFVTFSNKLEAKNAIKQL 116 Query: 537 DGRKV 551 + ++ Sbjct: 117 NNYEI 121
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 36.2 bits (82), Expect = 0.064 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Frame = +3 Query: 312 NPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRV-RLVTDKDTNKPRGYAF 488 N S N D +F+ L+ E E + F A+G I + +++ D DT +GYAF Sbjct: 87 NKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAF 146 Query: 489 IEY 497 I + Sbjct: 147 INF 149 Score = 35.0 bits (79), Expect = 0.14 Identities = 17/59 (28%), Positives = 30/59 (50%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 T++V L+ + SE + F GP+ + D+ T + +GY F+E++ D A K Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 36.2 bits (82), Expect = 0.064 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L V L + ++ + F GPI R++ D T GYAF+++ D +NA K Sbjct: 104 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTV 163 Query: 537 DG 542 +G Sbjct: 164 NG 165 Score = 35.0 bits (79), Expect = 0.14 Identities = 16/56 (28%), Positives = 30/56 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 L+V L ++ +++ F YG I + ++ DK T +PRG AF+ + + + A Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 36.2 bits (82), Expect = 0.064 Identities = 17/56 (30%), Positives = 30/56 (53%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 L+V L ++ +++ F YG I + ++ DK T KPRG AF+ + + + A Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228 Score = 36.2 bits (82), Expect = 0.064 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L V L + ++ + F GPI R++ D T GYAF+++ D +NA K Sbjct: 87 LIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSL 146 Query: 537 DG 542 +G Sbjct: 147 NG 148
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 36.2 bits (82), Expect = 0.064 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +3 Query: 306 NYNPQSDPNTTSDPYK--TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 N N S N+ D L++ L T++ + + + YG I + + DK TNK +G Sbjct: 45 NNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 104 Query: 480 YAFIEY 497 Y F+++ Sbjct: 105 YGFVDF 110
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 36.2 bits (82), Expect = 0.064 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = +3 Query: 321 SDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYM 500 +DP ++ L V L + ++ + F A GPI R++ D T GYAF+++ Sbjct: 118 NDPRASNT---NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFT 174 Query: 501 HTRDMKNAYKQADG 542 D + A K +G Sbjct: 175 SEMDSQRAIKVLNG 188 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 L+V L ++ ++ F YG I + ++ DK T +PRG AF+ Y + + A Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 268
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 36.2 bits (82), Expect = 0.064 Identities = 16/57 (28%), Positives = 31/57 (54%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 +L+V L + +ES + +F + GP+ +R+ D T + GYA++ + D + A Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERA 59 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/65 (24%), Positives = 34/65 (52%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L+V L+ + R++ F YG I +++TD++ + +G+ F+ + + A + Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347 Query: 537 DGRKV 551 +GR V Sbjct: 348 NGRVV 352 Score = 30.4 bits (67), Expect = 3.5 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = +3 Query: 318 QSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEY 497 Q DP+ +F+ L+ + F A+G I ++ TD+ N +GY F+ + Sbjct: 79 QRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNS-KGYGFVHF 137
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 36.2 bits (82), Expect = 0.064 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 +FV ++ + E + FE GPI +RL+ D + + RGYAFI + + A K Sbjct: 167 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 226 Query: 537 DGRKV 551 D ++ Sbjct: 227 DSYEI 231
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 36.2 bits (82), Expect = 0.064 Identities = 18/67 (26%), Positives = 35/67 (52%) Frame = +3 Query: 330 NTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTR 509 N ++D T++V ++ ++ ++ F P+ R++ DK +GYAFIE+ + Sbjct: 2 NYSADSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQG 61 Query: 510 DMKNAYK 530 D + A K Sbjct: 62 DAQYAIK 68
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 35.8 bits (81), Expect = 0.084 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = +3 Query: 351 KTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYK 530 + L+V L + + + F YG I+++R+ DK T +G AF+ Y D KNA Sbjct: 19 RVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKAT---KGTAFVVYEDIYDAKNAVD 75 Query: 531 QADGRKV 551 G V Sbjct: 76 HLSGFNV 82
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 35.8 bits (81), Expect = 0.084 Identities = 15/55 (27%), Positives = 33/55 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ E+ + F YG +K V+++T++ T +GY F+ +++ D++ Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQ 94
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 35.8 bits (81), Expect = 0.084 Identities = 15/55 (27%), Positives = 33/55 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ E+ + F YG +K V+++T++ T +GY F+ +++ D++ Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQ 259 Score = 35.8 bits (81), Expect = 0.084 Identities = 15/55 (27%), Positives = 33/55 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ E+ + F YG +K V+++T++ T +GY F+ +++ D++ Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQ 94
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 35.8 bits (81), Expect = 0.084 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +3 Query: 312 NPQSDPNTTSDPYKT-LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAF 488 N S N KT L++ L T++ + + + YG I + + DK TNK +GY F Sbjct: 42 NSSSGSNGNDQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 101 Query: 489 IEY 497 +++ Sbjct: 102 VDF 104
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 35.8 bits (81), Expect = 0.084 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Frame = +3 Query: 306 NYNPQSDPNTTSDPYK--TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRG 479 N N S N+ D L++ L T++ + + + YG I + + DK TNK +G Sbjct: 45 NNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKG 104 Query: 480 YAFIEY 497 Y F+++ Sbjct: 105 YGFVDF 110
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 35.8 bits (81), Expect = 0.084 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 4/70 (5%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRD----MKNA 524 LFV L++ET++ + R F +G I ++ + ++ + RG+ F+ + + ++N Sbjct: 9 LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNG 68 Query: 525 YKQADGRKVD 554 DGR +D Sbjct: 69 PHTLDGRTID 78 Score = 33.9 bits (76), Expect = 0.32 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 8/85 (9%) Frame = +3 Query: 324 DPNTTSDPYK----TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFI 491 +P T P K +F+ L +E+ ++ F YG + V ++ D++ K RG+ F+ Sbjct: 83 NPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFL 142 Query: 492 EYMHTRDMKNA----YKQADGRKVD 554 + +++ Y +G++V+ Sbjct: 143 SFEEESSVEHVTNERYINLNGKQVE 167
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 35.8 bits (81), Expect = 0.084 Identities = 15/55 (27%), Positives = 33/55 (60%) Frame = +3 Query: 354 TLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMK 518 T+FV ++ E+ + F YG +K V+++T++ T +GY F+ +++ D++ Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNR-TGVSKGYGFVSFVNDVDVQ 94
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 35.8 bits (81), Expect = 0.084 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = +3 Query: 294 KELQN--YNPQSDPNTTSDPYKTLFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTN 467 KELQ+ +P + +++ LN E +E + F YG V L D++T Sbjct: 10 KELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69 Query: 468 KPRGYAFIEYMHTRDMKNAYKQADGRKV 551 + +G+A+++Y R A +G K+ Sbjct: 70 ESQGFAYLKYEDQRSTILAVDNLNGFKI 97
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 35.8 bits (81), Expect = 0.084 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNAYKQA 536 L V L + ++ + F A GPI R++ D T GYAF+++ D + A K Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 188 Query: 537 DG 542 +G Sbjct: 189 NG 190 Score = 35.4 bits (80), Expect = 0.11 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = +3 Query: 357 LFVARLNYETSESRVKREFEAYGPIKRVRLVTDKDTNKPRGYAFIEYMHTRDMKNA 524 L+V L ++ ++ F YG I + ++ DK T +PRG AF+ Y + + A Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 270 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,363,631 Number of Sequences: 219361 Number of extensions: 1572624 Number of successful extensions: 6348 Number of sequences better than 10.0: 353 Number of HSP's better than 10.0 without gapping: 5971 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6307 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
