ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial pre... 112 5e-25
2PHO1_ARATH (Q8S403) Putative phosphate transporter 1 33 0.27
3VHP1_CAEEL (Q10038) Tyrosine-protein phosphatase vhp-1 (EC 3.1.3... 32 1.0
4GDA2_WHEAT (P04722) Alpha/beta-gliadin A-II precursor (Prolamin) 30 3.0
5ATR_YEAST (P38111) Serine/threonine-protein kinase MEC1 (EC 2.7.... 30 3.0
6GPA8_DICDI (P34046) Guanine nucleotide-binding protein alpha-8 s... 29 5.1
7GDA9_WHEAT (P18573) Alpha/beta-gliadin MM1 precursor (Prolamin) 29 6.7
8SPN90_HUMAN (Q9NZQ3) SH3 adapter protein SPIN90 (NCK-interacting... 29 6.7
9ISTA_PSEAE (P15025) Transposase for insertion sequence element IS21 28 8.7
10GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor (P... 28 8.7

>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor|
          Length = 257

 Score =  112 bits (280), Expect = 5e-25
 Identities = 52/91 (57%), Positives = 69/91 (75%)
 Frame = -2

Query: 379 RMFSSNEKHLPPISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAGQEALEN 200
           R FS +  H+P + D  +  AFKDLMAA W ELP ++V++AK  +SK TDDKAGQEAL+N
Sbjct: 87  RRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKN 146

Query: 199 VFRAAEACEEFSGVLVTLRMALDDLCGLTGE 107
           VFRAAEA EEF G+L +++M +DD  G++GE
Sbjct: 147 VFRAAEAVEEFGGILTSIKMEIDDSIGMSGE 177



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>PHO1_ARATH (Q8S403) Putative phosphate transporter 1|
          Length = 782

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 363 MRNICLQYLTRKLRLHLRI*WLPAGMSFRVXXXXXXXXXXXXXLMIRLVKKLWKMYFVQL 184
           +RN    YL+  L L LR+ W+   M FRV              +  + +  W  Y V+ 
Sbjct: 697 LRNKNFYYLSIALNLVLRVAWIETIMRFRVSPVQSHLLDFFLASLEVIRRGHWNFYRVEN 756

Query: 183 KHVKNLVEF 157
           +H+ N+ +F
Sbjct: 757 EHLNNVGQF 765



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>VHP1_CAEEL (Q10038) Tyrosine-protein phosphatase vhp-1 (EC 3.1.3.48) (Vh1 dual|
           specificity phosphatase family protein 1)
          Length = 657

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
 Frame = +3

Query: 108 SPVRP-QRSSRAILRVTKTPLNSSHASAARNT---FSKAS*PALSSVALDTSFFASSTRE 275
           SP+ P   SSR ++    TP  SS +S +      FS     + SS+ ++  FFAS+   
Sbjct: 481 SPIIPVASSSREVILTLPTPAASSSSSTSSEPSFDFSSFESSSSSSIVVENPFFASTEVP 540

Query: 276 PGSSFQLAAIKSLNAVSIFGSDIGGRC 356
            GSS       S +  +   S    RC
Sbjct: 541 AGSSSISTPSGSQSTPASASSSAASRC 567



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>GDA2_WHEAT (P04722) Alpha/beta-gliadin A-II precursor (Prolamin)|
          Length = 291

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +1

Query: 160 LH*ILHMLQLHEIHF--PKLLDQPYHQXXXXXXXXXPQQENPEAHSSWQPS--NP*MQSQ 327
           +H ++H + LH+ H    +   Q   Q         PQQ+ P     +QPS  NP  Q  
Sbjct: 189 IHNVVHAIILHQQHHHHQQQQQQQQQQPLSQVSFQQPQQQYPSGQGFFQPSQQNPQAQGS 248

Query: 328 FSGQIL 345
           F  Q L
Sbjct: 249 FQPQQL 254



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>ATR_YEAST (P38111) Serine/threonine-protein kinase MEC1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase MEC1) (Mitosis entry
            checkpoint protein 1) (ATR homolog)
          Length = 2368

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -2

Query: 334  PKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDDKAG--QEALEN 200
            PK+ T + D+ AAS +E PG+     K+ +SKAT+D     +EAL++
Sbjct: 1849 PKVITFWLDIAAASISEAPGN----RKEMLSKATEDICSHVEEALQH 1891



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>GPA8_DICDI (P34046) Guanine nucleotide-binding protein alpha-8 subunit (G|
           alpha-8)
          Length = 403

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 346 PISDPKIETAFKDLMAASWNELPGSLVEEAKKEVSKATDD 227
           P+    I   +K  +  +W E  G L+EE KK + KAT D
Sbjct: 316 PLHTFHIAARYKKDIKYTWEEAKGILLEENKKVLMKATKD 355



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>GDA9_WHEAT (P18573) Alpha/beta-gliadin MM1 precursor (Prolamin)|
          Length = 307

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 160 LH*ILHMLQLHEIHFPKLLDQPYHQXXXXXXXXXPQQENPEAHSSWQPSNP*MQSQFSGQ 339
           +H ++H + LH+    +   Q   Q         PQQ+ P    S+QPS    Q+Q S Q
Sbjct: 209 IHNVVHAIILHQQQQQQ--QQQQQQPLSQVSFQQPQQQYPSGQGSFQPSQQNPQAQGSVQ 266



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>SPN90_HUMAN (Q9NZQ3) SH3 adapter protein SPIN90 (NCK-interacting protein with|
           SH3 domain) (SH3 protein interacting with Nck, 90 kDa)
           (VacA-interacting protein, 54 kDa) (VIP54) (AF3p21)
           (Diaphanous protein-interacting protein)
           (Dia-interacting protein 1)
          Length = 722

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 105 TSPVRPQRSSRAILRVTKTPLNSSHASAARNTFSKAS*PALSSVALDTSFFASSTREPGS 284
           T P   +R  R  L  + +  +++  S   +  S +S   +SS +LDT + +SS  EPGS
Sbjct: 181 TPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSS---VSSTSLDTLYTSSSPSEPGS 237

Query: 285 S 287
           S
Sbjct: 238 S 238



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>ISTA_PSEAE (P15025) Transposase for insertion sequence element IS21|
          Length = 390

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 397 FSWNSRRMFSSNEKHLPPISDPKIETAFKDLMAASWN 287
           F     + F+  ++HL P+ D   +T++ D+   SW+
Sbjct: 273 FKETPEQRFALEQEHLQPLPDTDFDTSYFDIRHVSWD 309



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>GDA6_WHEAT (P04726) Alpha/beta-gliadin clone PW1215 precursor (Prolamin)|
          Length = 296

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +1

Query: 160 LH*ILHMLQLHEIHFPKL------LDQPYHQXXXXXXXXXPQQENPEAHSSWQP 303
           +H ++H + LH+    +       L QP  Q         P Q+NP+A  S QP
Sbjct: 201 IHNVVHAIILHQQQRQQQPSSQVSLQQPQQQYPSGQGFFQPSQQNPQAQGSVQP 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,899,271
Number of Sequences: 219361
Number of extensions: 1174608
Number of successful extensions: 3462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3462
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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