ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd19e07 |
|---|---|
| Clone Library Name | barley_pub |
>SPC18_MOUSE (Q9R0P6) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) (Sid 2895) Length = 179 Score = 209 bits (532), Expect = 5e-54 Identities = 104/169 (61%), Positives = 133/169 (78%), Gaps = 1/169 (0%) Frame = +1 Query: 115 DQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRG 294 D ++ +R M RQ+ Q+++ GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RG Sbjct: 5 DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64 Query: 295 DILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDR 471 D+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q+ G + LTKGDNN DDR Sbjct: 65 DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDR 123 Query: 472 LLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGL 172
>SPC18_PONPY (Q5R9C7) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 209 bits (531), Expect = 7e-54 Identities = 104/169 (61%), Positives = 133/169 (78%), Gaps = 1/169 (0%) Frame = +1 Query: 115 DQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRG 294 D ++ +R M RQ+ Q+++ GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RG Sbjct: 5 DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64 Query: 295 DILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDR 471 D+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LTKGDNN DDR Sbjct: 65 DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLTKGDNNAVDDR 123 Query: 472 LLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGL 172
>SPC18_HUMAN (P67812) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 209 bits (531), Expect = 7e-54 Identities = 104/169 (61%), Positives = 133/169 (78%), Gaps = 1/169 (0%) Frame = +1 Query: 115 DQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRG 294 D ++ +R M RQ+ Q+++ GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RG Sbjct: 5 DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64 Query: 295 DILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDR 471 D+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LTKGDNN DDR Sbjct: 65 DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLTKGDNNAVDDR 123 Query: 472 LLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGL 172
>SPC18_CANFA (P67811) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 209 bits (531), Expect = 7e-54 Identities = 104/169 (61%), Positives = 133/169 (78%), Gaps = 1/169 (0%) Frame = +1 Query: 115 DQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRG 294 D ++ +R M RQ+ Q+++ GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RG Sbjct: 5 DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64 Query: 295 DILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDR 471 D+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LTKGDNN DDR Sbjct: 65 DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLTKGDNNAVDDR 123 Query: 472 LLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGL 172
>SPC18_BOVIN (P67810) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 209 bits (531), Expect = 7e-54 Identities = 104/169 (61%), Positives = 133/169 (78%), Gaps = 1/169 (0%) Frame = +1 Query: 115 DQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRG 294 D ++ +R M RQ+ Q+++ GMIV+SAL+IWKGLMV TGSESP+VVVLSGSMEP F RG Sbjct: 5 DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRG 64 Query: 295 DILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDR 471 D+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q +G + LTKGDNN DDR Sbjct: 65 DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQ-NGHIKFLTKGDNNAVDDR 123 Query: 472 LLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 LY QGQ WL+K ++GRA G++PY+G VTI+M + P KY ++ LGL Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGL 172
>SPC18_RAT (P42667) Microsomal signal peptidase 18 kDa subunit (EC 3.4.-.-)| (SPase 18 kDa subunit) (SPC18) (Endopeptidase SP18) (SEC11-like 1) Length = 179 Score = 206 bits (524), Expect = 4e-53 Identities = 102/169 (60%), Positives = 132/169 (78%), Gaps = 1/169 (0%) Frame = +1 Query: 115 DQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRG 294 D ++ +R M RQ+ Q+++ GMIV+SAL+IWKGLM+ TGSESP+VVVLSGSMEP F RG Sbjct: 5 DFLDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMLITGSESPIVVVLSGSMEPAFHRG 64 Query: 295 DILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDR 471 D+LFL + +DPIR GEIVVF I+GREIPIVHRV+K+HE+Q+ G + LTKGDNN DDR Sbjct: 65 DLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDR 123 Query: 472 LLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 LY QGQ WL+K ++GRA G++PY+G VTI+M + P Y ++ LGL Sbjct: 124 GLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFSYAVLFLLGL 172
>SPC21_CANFA (P13679) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 206 bits (524), Expect = 4e-53 Identities = 105/181 (58%), Positives = 136/181 (75%), Gaps = 2/181 (1%) Frame = +1 Query: 79 GREIPAE-MGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVV 255 G +PA + GD +R M RQ+ Q+++ MIV+SAL+IWKGL+V TGSESP+VV Sbjct: 7 GTHLPASGLDIFGD----LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVV 62 Query: 256 VLSGSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVD 432 VLSGSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ Sbjct: 63 VLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIK 121 Query: 433 ILTKGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGAL 612 LTKGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ + Sbjct: 122 FLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVM 181 Query: 613 G 615 G Sbjct: 182 G 182
>SPC21_RAT (Q9WTR7) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 205 bits (522), Expect = 8e-53 Identities = 104/181 (57%), Positives = 136/181 (75%), Gaps = 2/181 (1%) Frame = +1 Query: 79 GREIP-AEMGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVV 255 G +P + + GD +R M RQ+ Q+++ MIV+SAL+IWKGL+V TGSESP+VV Sbjct: 7 GTHLPTSSLDIFGD----LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVV 62 Query: 256 VLSGSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVD 432 VLSGSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ Sbjct: 63 VLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIK 121 Query: 433 ILTKGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGAL 612 LTKGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ + Sbjct: 122 FLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVM 181 Query: 613 G 615 G Sbjct: 182 G 182
>SPC21_PONPY (Q5RC30) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 205 bits (521), Expect = 1e-52 Identities = 104/181 (57%), Positives = 136/181 (75%), Gaps = 2/181 (1%) Frame = +1 Query: 79 GREIPAE-MGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVV 255 G +PA + GD ++ M RQ+ Q+++ MIV+SAL+IWKGL+V TGSESP+VV Sbjct: 7 GAHLPASGLDIFGD----LKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVV 62 Query: 256 VLSGSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVD 432 VLSGSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ Sbjct: 63 VLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIK 121 Query: 433 ILTKGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGAL 612 LTKGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ + Sbjct: 122 FLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVM 181 Query: 613 G 615 G Sbjct: 182 G 182
>SPC21_MOUSE (Q9D8V7) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 205 bits (521), Expect = 1e-52 Identities = 104/181 (57%), Positives = 136/181 (75%), Gaps = 2/181 (1%) Frame = +1 Query: 79 GREIP-AEMGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVV 255 G +P + + GD +R M RQ+ Q+++ MIV+SAL+IWKGL+V TGSESP+VV Sbjct: 7 GTHLPTSSLDIFGD----LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVV 62 Query: 256 VLSGSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVD 432 VLSGSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ Sbjct: 63 VLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIK 121 Query: 433 ILTKGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGAL 612 LTKGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ + Sbjct: 122 FLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVM 181 Query: 613 G 615 G Sbjct: 182 G 182
>SPC21_HUMAN (Q9BY50) Microsomal signal peptidase 21 kDa subunit (EC 3.4.-.-)| (SPase 21 kDa subunit) (SPC21) (SEC11-like 3) Length = 191 Score = 205 bits (521), Expect = 1e-52 Identities = 104/181 (57%), Positives = 136/181 (75%), Gaps = 2/181 (1%) Frame = +1 Query: 79 GREIPAE-MGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVV 255 G +PA + GD ++ M RQ+ Q+++ MIV+SAL+IWKGL+V TGSESP+VV Sbjct: 7 GAHLPASGLDIFGD----LKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVV 62 Query: 256 VLSGSMEPGFKRGDILFL-HMSQDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVD 432 VLSGSMEP F RGD+LFL + +DPIR GEIVVF ++GR+IPIVHRVIKVHE+ ++G++ Sbjct: 63 VLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIK 121 Query: 433 ILTKGDNNFGDDRLLYAQGQLWLQKHHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGAL 612 LTKGDNN DDR LY +GQ WL+K ++GRA G+LPYVG VTI+M + P KY L+ + Sbjct: 122 FLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVM 181 Query: 613 G 615 G Sbjct: 182 G 182
>SEC11_YEAST (P15367) Signal sequence-processing protein SEC11 (EC 3.4.-.-)| Length = 167 Score = 142 bits (359), Expect = 6e-34 Identities = 72/161 (44%), Positives = 108/161 (67%), Gaps = 1/161 (0%) Frame = +1 Query: 139 MQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVVLSGSMEPGFKRGDILFLHMS 318 M +R L +++++ + SA + W+GL +AT S SP+VVVLSGSMEP F+RGDILFL Sbjct: 1 MNLRFELQKLLNVCFLFASAYMFWQGLAIATNSASPIVVVLSGSMEPAFQRGDILFLWNR 60 Query: 319 QDPIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDRLLYAQGQLW 498 + G++VV+ ++G++IPIVHRV++ H + +LTKGDNN G+D LYA +++ Sbjct: 61 NTFNQVGDVVVYEVEGKQIPIVHRVLRQHNNHADKQF-LLTKGDNNAGNDISLYANKKIY 119 Query: 499 LQK-HHIMGRAVGYLPYVGWVTIVMTEKPIIKYLLIGALGL 618 L K I+G GY P +G++TI ++E K+ L+G LGL Sbjct: 120 LNKSKEIVGTVKGYFPQLGYITIWISENKYAKFALLGMLGL 160
>LEPW_BACSU (P54506) Signal peptidase I W (EC 3.4.21.89) (SPase I) (Leader| peptidase I) Length = 190 Score = 41.6 bits (96), Expect = 0.002 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 11/139 (7%) Frame = +1 Query: 175 LGMIVTSALIIWKGLMVATGSES--PVVV------VLSGSMEPGFKRGDILFLHMSQD-- 324 L +I+ + +I+ ++++T S P V VLSGSMEP F G ++ + D Sbjct: 8 LYVIIFTLIIVLTLVVISTRSSGGEPAVFGYTLKSVLSGSMEPEFNTGSLILVKEITDVK 67 Query: 325 PIRTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGDNNFGDDRLLYAQGQLWLQ 504 ++ G+++ F D + HR++ + ++ + TKGDNN D + Sbjct: 68 ELQKGDVITFMQDA-NTAVTHRIVDI--TKQGDHLLFKTKGDNNAAAD-------SAPVS 117 Query: 505 KHHIMGRAVGY-LPYVGWV 558 ++ + G+ LPY G++ Sbjct: 118 DENVRAQYTGFQLPYAGYM 136
>NU4M_CHOCR (P48915) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 492 Score = 36.6 bits (83), Expect = 0.061 Identities = 20/56 (35%), Positives = 28/56 (50%) Frame = +1 Query: 70 SFAGREIPAEMGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGS 237 +FA P FIG+ + + S Q+ + LT SLGMI +A IW + GS Sbjct: 382 TFANLGFPGTSSFIGEVLVLLSSFQINKTLTLFASLGMIFGAAYSIWLFNRIIFGS 437
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = -1 Query: 377 GISRPSILKTTISPVRIGSWLMCKNRISPLLNPGSMLPERTTTTGDSL--PVATINP 213 G RP + T S R GS + SP+LN GS+ P G SL PV I+P Sbjct: 409 GTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISP 465
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = -1 Query: 377 GISRPSILKTTISPVRIGSWLMCKNRISPLLNPGSMLPERTTTTGDSL--PVATINP 213 G RP + T S R GS + SP+LN GS+ P G SL PV I+P Sbjct: 409 GTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGSLSPGTAAVGGSSLDSPVQAISP 465
>KS6A6_HUMAN (Q9UK32) Ribosomal protein S6 kinase alpha-6 (EC 2.7.11.1)| (S6K-alpha 6) (90 kDa ribosomal protein S6 kinase 6) (p90-RSK 6) (Ribosomal S6 kinase 4) (RSK-4) (pp90RSK4) Length = 745 Score = 32.3 bits (72), Expect = 1.2 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 8/84 (9%) Frame = +1 Query: 280 GFKRGDILFLHMSQDPIRTGEIVVFNIDG--REIPIVHRVIKVHERQESGEVDIL-TKGD 450 G G++ L M +P+ GE + +G +EIPI H V + +E+ + + ++L G Sbjct: 22 GASSGEVNGLKMVDEPMEEGEADSCHDEGVVKEIPITHHVKEGYEKADPAQFELLKVLGQ 81 Query: 451 NNFGDDRLLYAQ-----GQLWLQK 507 +FG L+ + GQL+ K Sbjct: 82 GSFGKVFLVRKKTGPDAGQLYAMK 105
>SH2D3_HUMAN (Q8N5H7) SH2 domain-containing protein 3C (Novel SH2-containing| protein 3) Length = 860 Score = 31.6 bits (70), Expect = 2.0 Identities = 23/75 (30%), Positives = 33/75 (44%) Frame = -1 Query: 299 ISPLLNPGSMLPERTTTTGDSLPVATINPFHMINAEVTIIPRLMICVRTWRTCIDRIDST 120 +SP GS + R+ T D L + T +PR +R+ +D+I Sbjct: 345 VSPSGPKGSHMKRRSVTMTDGLTADKVTRSDGCPTS-TSLPRPRDSIRSCALSMDQIPDL 403 Query: 119 WSPMNPISAGISLPA 75 SPM+PIS S PA Sbjct: 404 HSPMSPISESPSSPA 418
>NU4M_ARATH (P93313) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 495 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/59 (25%), Positives = 30/59 (50%) Frame = +1 Query: 70 SFAGREIPAEMGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESP 246 + A +P FIG+ + + + Q ++ + +LGMI+ +A +W V +G+ P Sbjct: 385 TLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVSGNLKP 443
>RMAR_KLULA (Q6DN56) Mitochondrial ribosomal protein VAR1| Length = 388 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = -3 Query: 480 IQKSVIPKIIITF---REDINFSTFLAFMNLNHTVNNWNFTAINIKNNYFSSADRILAHV 310 I K +I K I + +I F +L++ N+N +NN N NI +NY + + L ++ Sbjct: 110 IYKLIISKPIFEHSINKVNIKFFYYLSYKNINKNINNNNNLINNIYSNYKFNINSKLINL 169 Query: 309 QKQNITPFKSRL 274 NI + L Sbjct: 170 LNNNINSISNIL 181
>SMS1_RAT (Q7TSX5) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin synthase 1) (Mob protein) Length = 419 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 221 WLRQGASRRLWWFFLVAWSLDLKGVIFC 304 ++++ + RRLWW+ + W L + G IFC Sbjct: 301 FIKEYSPRRLWWYHWICWLLSVVG-IFC 327
>SMS1_MOUSE (Q8VCQ6) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin synthase 1) (Mob protein) Length = 419 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 221 WLRQGASRRLWWFFLVAWSLDLKGVIFC 304 ++++ + RRLWW+ + W L + G IFC Sbjct: 301 FIKEYSPRRLWWYHWICWLLSVVG-IFC 327
>SMS1_HUMAN (Q86VZ5) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin synthase 1) (Mob protein) Length = 419 Score = 30.8 bits (68), Expect = 3.4 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +2 Query: 221 WLRQGASRRLWWFFLVAWSLDLKGVIFC 304 ++++ + RRLWW+ + W L + G IFC Sbjct: 301 FIKEYSPRRLWWYHWICWLLSVVG-IFC 327
>NU4M_WHEAT (P27572) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 495 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/59 (25%), Positives = 30/59 (50%) Frame = +1 Query: 70 SFAGREIPAEMGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESP 246 + A +P FIG+ + + + Q ++ + +LGMI+ +A +W V +G+ P Sbjct: 385 TLANMSLPGTSSFIGEFLILVGAFQRNSLVATLRALGMILGAAYSLWLYNRVVSGNLKP 443
>SMS1_CHICK (Q7T3T4) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Sphingomyelin synthase 1) (MOB protein) Length = 417 Score = 30.4 bits (67), Expect = 4.4 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = +2 Query: 221 WLRQGASRRLWWFFLVAWSLDLKGVIFC 304 ++++ + RRLWW+ + W+L + G +FC Sbjct: 299 FIKEYSPRRLWWYHWLCWTLSMVG-MFC 325
>GPDA_PARUW (Q6MF42) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 5.7 Identities = 18/46 (39%), Positives = 25/46 (54%) Frame = +1 Query: 121 VESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESPVVVV 258 VES+ S +R V Q+ SLG+ +I KG+ TG P VV+ Sbjct: 75 VESVTSAGLRSVFEQVRSLGLPNCPIVITSKGIEQDTGMILPEVVI 120
>NU4M_MARPO (P26848) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 495 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/59 (25%), Positives = 29/59 (49%) Frame = +1 Query: 70 SFAGREIPAEMGFIGDQVESIRSMQVRQVLTQIISLGMIVTSALIIWKGLMVATGSESP 246 + A +P FIG+ + + + Q ++ + +LGMI+ +A +W V G+ P Sbjct: 385 TLANMSLPGTSSFIGEFLILVGAFQRNSLVATLAALGMILGAAYSLWLYNRVVFGNFKP 443
>SMS2_MOUSE (Q9D4B1) Phosphatidylcholine:ceramide cholinephosphotransferase 2| (EC 2.7.-.-) (Sphingomyelin synthase 2) Length = 365 Score = 29.6 bits (65), Expect = 7.5 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +2 Query: 221 WLRQGASRRLWWFFLVAWSLDLKGVI 298 ++++ + R WW+ LV W L G+I Sbjct: 239 FIKEYSPRHFWWYHLVCWLLSAAGII 264
>SMS2_HUMAN (Q8NHU3) Phosphatidylcholine:ceramide cholinephosphotransferase 2| (EC 2.7.-.-) (Sphingomyelin synthase 2) Length = 365 Score = 29.3 bits (64), Expect = 9.8 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = +2 Query: 221 WLRQGASRRLWWFFLVAWSLDLKGVI 298 ++++ + R WW+ L+ W L G+I Sbjct: 239 FIKEYSPRHFWWYHLICWLLSAAGII 264
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 29.3 bits (64), Expect = 9.8 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +1 Query: 331 RTGEIVVFNIDGREIPIVHRVIKVHERQESGEVDILTKGD 450 RTGE+V+ DGRE+ ++ H G D++ KGD Sbjct: 971 RTGEVVLVGTDGRELASSRILLGAHLLHNDG--DMVKKGD 1008 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,376,538 Number of Sequences: 219361 Number of extensions: 1805122 Number of successful extensions: 5384 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5358 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
