ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18o19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, co... 339 3e-90
2gb|AY688678.1| Mus musculus plexin D1 (Plxnd1) mRNA, complete cds 42 0.89
3ref|NM_026376.1| Mus musculus plexin D1 (Plxnd1), mRNA 42 0.89
4dbj|AK147513.1| Mus musculus cDNA, RIKEN full-length enriched li... 42 0.89
5gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, comp... 42 0.89
6gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A... 42 0.89
7dbj|AK129175.1| Mus musculus mRNA for mKIAA0620 protein 42 0.89
8gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, comple... 42 0.89
9ref|XM_476390.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.5
10ref|NM_001024510.1| Bos taurus coronin, actin binding protein, 1... 40 3.5
11ref|XM_533732.2| PREDICTED: Canis familiaris similar to plexin D... 40 3.5
12ref|XM_808517.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 3.5
13gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, comp... 40 3.5
14ref|XM_501915.1| Yarrowia lipolytica CLIB122, YALI0C16709g predi... 40 3.5
15gb|BC103376.1| Bos taurus coronin, actin binding protein, 1B, mR... 40 3.5
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
17gb|AC022078.12|AC022078 Homo sapiens 12p BAC RP11-498P8 (Roswell... 40 3.5
18dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
19gb|BT021806.1| Bos taurus coronin, actin binding protein, 1B (CO... 40 3.5
20dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
21emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1... 40 3.5 
>dbj|AB109216.1| Triticum aestivum mRNA for cysteine protease, complete cds
          Length = 1260

 Score =  339 bits (171), Expect = 3e-90
 Identities = 239/259 (92%), Gaps = 2/259 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  ccctcttccgctcgttgcctctcctcgtcctcctagtcgctctgtccagcaccacattac 72
           ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |
Sbjct: 44  ccctcttccgctcgttggctctcctcgtcctcctagtcaccctgtccagcaccacattgc 103

                                                                       
Query: 73  cttcctcccgttctacgtccgtcgatggagaccaccatgacctgctgatgctgggtaggt 132
           | ||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 104 cctcctcccgtgctacgtccggcgatggagacgaccatgacctgctgatgctgggtaggt 163

                                                                       
Query: 133 tccaccgatggatgtcgtggcatggccggacgtatccgagtgccgccgagaagctgcggc 192
           ||||||| ||||||||   ||||||||||||||| |  |||||||| |||||| ||||||
Sbjct: 164 tccaccggtggatgtcagcgcatggccggacgtaccatagtgccgctgagaag-tgcggc 222

                                                                       
Query: 193 ggtttgaggcgtaccgtcgcaacgtggacctcatcgacgcctccaacagggacgccgaga 252
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ggtttgaggtgtaccgtcgcaacgtggacctcatcgacgcctccaacagggacgccgaga 282

                              
Query: 253 gg-ctgggctatgagctcg 270
           || || |||||||||||||
Sbjct: 283 ggcctcggctatgagctcg 301
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>gb|AY688678.1| Mus musculus plexin D1 (Plxnd1) mRNA, complete cds
          Length = 5938

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cgtggacctcatcgacgcctc 235
            |||||||||||||||||||||
Sbjct: 4561 cgtggacctcatcgacgcctc 4581
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>ref|NM_026376.1| Mus musculus plexin D1 (Plxnd1), mRNA
          Length = 5938

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cgtggacctcatcgacgcctc 235
            |||||||||||||||||||||
Sbjct: 4561 cgtggacctcatcgacgcctc 4581
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>dbj|AK147513.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1058N16 product:plexin D1, full insert sequence
          Length = 6907

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cgtggacctcatcgacgcctc 235
            |||||||||||||||||||||
Sbjct: 4602 cgtggacctcatcgacgcctc 4622
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>gb|AC008875.9| Homo sapiens chromosome 5 clone CTD-2201E18, complete sequence
          Length = 167100

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 96     gatggagaccaccatgacctgctga 120
              ||||||| |||||||||||||||||
Sbjct: 164068 gatggaggccaccatgacctgctga 164092
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>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence
          Length = 193254

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 96    gatggagaccaccatgacctgctga 120
             ||||||| |||||||||||||||||
Sbjct: 50679 gatggaggccaccatgacctgctga 50703
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>dbj|AK129175.1| Mus musculus mRNA for mKIAA0620 protein
          Length = 6178

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 215  cgtggacctcatcgacgcctc 235
            |||||||||||||||||||||
Sbjct: 3866 cgtggacctcatcgacgcctc 3886
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>gb|AC139761.4| Mus musculus BAC clone RP23-223C23 from 6, complete sequence
          Length = 187169

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 215   cgtggacctcatcgacgcctc 235
             |||||||||||||||||||||
Sbjct: 16149 cgtggacctcatcgacgcctc 16129
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>ref|XM_476390.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1059

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 212 caacgtggacctcatcgacgcctccaac 239
           |||||||||||||||||||  |||||||
Sbjct: 204 caacgtggacctcatcgaccgctccaac 231
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>ref|NM_001024510.1| Bos taurus coronin, actin binding protein, 1B (CORO1B), mRNA
          Length = 1865

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 acagggacgccgagaggctg 257
           ||||||||||||||||||||
Sbjct: 47  acagggacgccgagaggctg 28
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>ref|XM_533732.2| PREDICTED: Canis familiaris similar to plexin D1 (LOC476526), mRNA
          Length = 5781

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 216  gtggacctcatcgacgcctc 235
            ||||||||||||||||||||
Sbjct: 4405 gtggacctcatcgacgcctc 4424
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>ref|XM_808517.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506975.20) partial mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 218 ggacctcatcgacgcctccaacag 241
           ||||||||||||||||||| ||||
Sbjct: 111 ggacctcatcgacgcctccgacag 88
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>gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, complete sequence
          Length = 104948

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 101   agaccaccatgacctgctgatgct 124
             ||||||||| ||||||||||||||
Sbjct: 84230 agaccaccaagacctgctgatgct 84253
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>ref|XM_501915.1| Yarrowia lipolytica CLIB122, YALI0C16709g predicted mRNA
          Length = 4011

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  tgacctgctgatgctgggta 129
            ||||||||||||||||||||
Sbjct: 2446 tgacctgctgatgctgggta 2427
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>gb|BC103376.1| Bos taurus coronin, actin binding protein, 1B, mRNA (cDNA clone
           MGC:127322 IMAGE:7952173), complete cds
          Length = 1951

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 acagggacgccgagaggctg 257
           ||||||||||||||||||||
Sbjct: 59  acagggacgccgagaggctg 40
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 212    caacgtggacctcatcgacgcctccaac 239
              |||||||||||||||||||  |||||||
Sbjct: 463486 caacgtggacctcatcgaccgctccaac 463513
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>gb|AC022078.12|AC022078 Homo sapiens 12p BAC RP11-498P8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169416

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    atgacctgctgatgctgggt 128
              ||||||||||||||||||||
Sbjct: 146303 atgacctgctgatgctgggt 146322
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 212   caacgtggacctcatcgacgcctccaac 239
             |||||||||||||||||||  |||||||
Sbjct: 65650 caacgtggacctcatcgaccgctccaac 65677
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>gb|BT021806.1| Bos taurus coronin, actin binding protein, 1B (CORO1B), mRNA,
           complete cds
          Length = 1865

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 acagggacgccgagaggctg 257
           ||||||||||||||||||||
Sbjct: 47  acagggacgccgagaggctg 28
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>dbj|AP003759.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1567_G09
          Length = 121388

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 212   caacgtggacctcatcgacgcctccaac 239
             |||||||||||||||||||  |||||||
Sbjct: 17398 caacgtggacctcatcgaccgctccaac 17425
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>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     tgacctgctgatgctgggta 129
               ||||||||||||||||||||
Sbjct: 2354498 tgacctgctgatgctgggta 2354517


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,383,214
Number of Sequences: 3902068
Number of extensions: 1383214
Number of successful extensions: 28671
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28626
Number of HSP's gapped (non-prelim): 44
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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