Clone Information

BLAST Search Result

Clone Name	basd19d14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GLXR_ECOLI (P77161) 2-hydroxy-3-oxopropionate reductase (EC 1.1....	80	4e-15
2	YKWC_BACSU (O34948) Hypothetical oxidoreductase ykwC (EC 1.1.-.-)	78	3e-14
3	GARR_ECOLI (P0ABQ2) 2-hydroxy-3-oxopropionate reductase (EC 1.1....	70	5e-12
4	GARR_ECOL6 (P0ABQ3) 2-hydroxy-3-oxopropionate reductase (EC 1.1....	70	5e-12
5	Y229_SYNY3 (Q55702) Hypothetical oxidoreductase slr0229 (EC 1.1....	64	3e-10
6	YFJR_BACSU (O34969) Hypothetical oxidoreductase yfjR (EC 1.1.-.-)	61	3e-09
7	YCY3_SHEFR (O33730) Hypothetical oxidoreductase in cytochrome c3...	60	6e-09
8	YIHU_SALTY (Q9L7S0) Hypothetical oxidoreductase yihU (EC 1.1.-.-)	60	7e-09
9	Y1010_HAEIN (P44979) Hypothetical oxidoreductase HI1010 (EC 1.1....	59	2e-08
10	3HIDH_ARATH (Q9SUC0) Probable 3-hydroxyisobutyrate dehydrogenase...	57	4e-08
11	YGBJ_ECOLI (Q46888) Hypothetical oxidoreductase ygbJ (EC 1.1.-.-)	56	8e-08
12	YIHU_SHIFL (P0A9V9) Hypothetical oxidoreductase yihU (EC 1.1.-.-)	56	1e-07
13	YIHU_ECOLI (P0A9V8) Hypothetical oxidoreductase yihU (EC 1.1.-.-)	56	1e-07
14	3HIDH_DROME (Q9V8M5) Probable 3-hydroxyisobutyrate dehydrogenase...	55	1e-07
15	MMSB_MYCTU (P63935) Probable 3-hydroxyisobutyrate dehydrogenase ...	54	5e-07
16	MMSB_MYCBO (P63936) Probable 3-hydroxyisobutyrate dehydrogenase ...	54	5e-07
17	MMSB_PSEAE (P28811) 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1...	51	3e-06
18	3HIDH_RAT (P29266) 3-hydroxyisobutyrate dehydrogenase, mitochond...	44	5e-04
19	3HIDH_MOUSE (Q99L13) 3-hydroxyisobutyrate dehydrogenase, mitocho...	44	5e-04
20	Y770_MYCTU (P71825) Hypothetical oxidoreductase Rv0770/MT0794 (E...	42	0.002
21	3HIDH_CAEEL (Q9XTI0) Probable 3-hydroxyisobutyrate dehydrogenase...	40	0.005
22	3HIDH_HUMAN (P31937) 3-hydroxyisobutyrate dehydrogenase, mitocho...	38	0.030
23	GATB_ANASP (Q8YX22) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	32	1.2
24	PITX1_RAT (Q99NA7) Pituitary homeobox 1	32	2.1
25	PITX1_MOUSE (P70314) Pituitary homeobox 1 (Homeobox protein P-OT...	32	2.1
26	PITX1_HUMAN (P78337) Pituitary homeobox 1 (Hindlimb expressed ho...	32	2.1
27	RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigment...	31	2.8
28	PANX1_HUMAN (Q96RD7) Pannexin-1	31	3.6
29	CAPD_STAAU (P39853) Capsular polysaccharide biosynthesis protein...	30	4.7
30	PITX1_CHICK (P56673) Pituitary homeobox 1 (cPTX1)	30	4.7
31	HBL1_CAEEL (Q9XYD3) Hunchback-like protein	30	4.7
32	JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)	30	6.2
33	PANX1_MOUSE (Q9JIP4) Pannexin-1	30	6.2
34	RPOB_STRT2 (Q5M2F5) DNA-directed RNA polymerase beta chain (EC 2...	30	6.2
35	RPOB_STRT1 (Q5LXV3) DNA-directed RNA polymerase beta chain (EC 2...	30	6.2
36	RPOB_XANOR (Q5GWS6) DNA-directed RNA polymerase beta chain (EC 2...	30	8.0
37	RPOB_XANC5 (Q3BWZ1) DNA-directed RNA polymerase beta chain (EC 2...	30	8.0
38	RPOB_XANAC (Q8PNT0) DNA-directed RNA polymerase beta chain (EC 2...	30	8.0
39	GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	30	8.0
40	RPOB_XYLFT (Q87A32) DNA-directed RNA polymerase beta chain (EC 2...	30	8.0
41	RPOB_XYLFA (Q9PA86) DNA-directed RNA polymerase beta chain (EC 2...	30	8.0
42	RPOB_XANCP (Q8PC56) DNA-directed RNA polymerase beta chain (EC 2...	30	8.0
43	EGL10_CAEEL (P49809) Regulator of G-protein signaling egl-10 (Eg...	30	8.0

>GLXR_ECOLI (P77161) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 292

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 46/159 (28%), Positives = 81/159 (50%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A +G L I+  GD+A+++ + P F++LGK    +G  G+G   K+   +I+   + A SE
Sbjct: 126 AREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSE 185

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSL 400
            L  A K+G  P  +   L  G  ++ + ++ G  M++ ++NP F +   QKD+ LAL  
Sbjct: 186 ALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQS 245

Query: 401 GDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
               A+++P             + G   LD SA+ + L+
Sbjct: 246 AKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALE 284

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>YKWC_BACSU (O34948) Hypothetical oxidoreductase ykwC (EC 1.1.-.-)|
          Length = 288

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 40/129 (31%), Positives = 67/129 (51%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A++G L I+  G+K  ++  +P F ++G+   + G  G+G   K+   + + + M   +E
Sbjct: 129 AQNGTLAIMVGGEKEAFEACMPIFSLMGENIQYQGPAGSGQHTKMCNQIAIAAGMIGVAE 188

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSL 400
            +  A KSGL P+ +L  +  GA  +       P MLQG++ P F +KH  KDM +AL  
Sbjct: 189 AMAYAQKSGLEPENVLKSITTGAAGSWSLSNLAPRMLQGNFEPGFYVKHFIKDMGIALEE 248

Query: 401 GDENAVSMP 427
            +     MP
Sbjct: 249 AELMGEEMP 257

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>GARR_ECOLI (P0ABQ2) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 294

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A DG L ++  GDKA++D        +       GE+G G   KL   +I+   + A SE
Sbjct: 127 AIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSE 186

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSL 400
            L LA K+G++P  +   +  G   + +   K P ++  ++ P F +    KD+  AL  
Sbjct: 187 ALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDT 246

Query: 401 GDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAV 502
                  +P+           R+ GLG  D SA+
Sbjct: 247 SHGVGAQLPLTAAVMEMMQALRADGLGTADHSAL 280

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>GARR_ECOL6 (P0ABQ3) 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60)|
           (Tartronate semialdehyde reductase) (TSAR)
          Length = 294

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 42/154 (27%), Positives = 68/154 (44%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A DG L ++  GDKA++D        +       GE+G G   KL   +I+   + A SE
Sbjct: 127 AIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSE 186

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSL 400
            L LA K+G++P  +   +  G   + +   K P ++  ++ P F +    KD+  AL  
Sbjct: 187 ALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDT 246

Query: 401 GDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAV 502
                  +P+           R+ GLG  D SA+
Sbjct: 247 SHGVGAQLPLTAAVMEMMQALRADGLGTADHSAL 280

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>Y229_SYNY3 (Q55702) Hypothetical oxidoreductase slr0229 (EC 1.1.-.-)|
          Length = 290

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 33/116 (28%), Positives = 61/116 (52%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A +G L I+  GD + +++ +P    +G+K    G  G+G  +KL   ++ G    A +E
Sbjct: 132 AINGTLTIMVGGDISDFEEALPVLKSIGEKIVHCGPSGSGQAVKLCNQVLCGIHAIAAAE 191

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRL 388
            + L+++ G++P+ ++D    GA  +       P M +  + P F +KH  KD+RL
Sbjct: 192 AIQLSEQLGIAPELVIDTCGSGAAGSWALTNLAPKMSEADFAPGFMVKHLLKDLRL 247

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>YFJR_BACSU (O34969) Hypothetical oxidoreductase yfjR (EC 1.1.-.-)|
          Length = 261

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 2/161 (1%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKM-KLVVNMIMGSMMNAFS 217
           A    L I+ AG         P  D L ++ F +GE    A   K+ +N ++ SM+ A S
Sbjct: 102 AAKAALRIITAGPAEAKQAAKPLLDSLSQQIFDVGEESKTANAAKISINFLLVSMLEALS 161

Query: 218 EGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPA-FPLKHQQKDMRLAL 394
           E   + +K GL  +  L++       +P+++  G  M +  + PA F +    KD  LAL
Sbjct: 162 ESFLMMEKYGLEQKQFLEIAS-ALFGSPVYQNYGTIMAEQKFEPAGFKMSLGLKDTNLAL 220

Query: 395 SLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           +     + ++P+              G GDLD++A+ + +K
Sbjct: 221 AAAKRVSANLPLAELAKSHFESGIEKGFGDLDWAALIKCIK 261

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>YCY3_SHEFR (O33730) Hypothetical oxidoreductase in cytochrome c3 5'region|
           (Fragment)
          Length = 194

 Score = 60.1 bits (144), Expect = 6e-09
 Identities = 35/130 (26%), Positives = 63/130 (48%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           AE+G L ++  GD+A +D + P           LG +G G   K+V  + +  ++   +E
Sbjct: 33  AENGALTVMMGGDQAHFDTVKPVISAYSCAEL-LGPVGAGQLTKMVNQICIAGVVQGLAE 91

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSL 400
           GL  A  +GL    +++V+  G   +   + +  +M QG Y+  F +   +KD+ +AL  
Sbjct: 92  GLHFAKSAGLDGLKVIEVISKGRAQSWQMENRYKTMWQGQYDFGFAIDWMRKDLGIALDE 151

Query: 401 GDENAVSMPV 430
              N   +PV
Sbjct: 152 ARRNGSHLPV 161

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>YIHU_SALTY (Q9L7S0) Hypothetical oxidoreductase yihU (EC 1.1.-.-)|
          Length = 298

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 2/158 (1%)
 Frame = +2

Query: 50  GQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFS-EGL 226
           G L++LA G     +   P    +G +    G  G G ++KL+ N  M   +NA S E  
Sbjct: 131 GTLLLLAGGTAEQVERATPVLMAMGNELVNTGGPGMGIRVKLI-NNYMSIALNALSAEAA 189

Query: 227 CLADKSGLSPQTLLDVLDLGAIANPMFKMKGPS-MLQGSYNPAFPLKHQQKDMRLALSLG 403
            L +  GLS    L V+   A     F    P+ +++G  +PAF +    KD+ +AL + 
Sbjct: 190 VLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVMKGDLSPAFMIDLAHKDLGIALDVA 249

Query: 404 DENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           ++  V MP+           R+ G G  D+SA+ E ++
Sbjct: 250 NQLHVPMPLGAASREVYNLARAAGRGREDWSAILEQVR 287

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>Y1010_HAEIN (P44979) Hypothetical oxidoreductase HI1010 (EC 1.1.-.-)|
          Length = 301

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
 Frame = +2

Query: 50  GQLVILAAGDKALYDDMVPAFDILGKKSFFLGE-MGNGAKMKLVVNMIMGSMMNAFSEGL 226
           G++ ++A+G K  ++ + P  D    K + +GE +G GA +K+V  ++ G  + A +E +
Sbjct: 136 GEMTVMASGSKQAFELLQPVLDATAAKVYNIGEEIGLGATVKIVHQLLAGVHIAAGAEAM 195

Query: 227 CLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALSLGD 406
            LA K+G+    + DV+   A  + MF+ +   +++G Y P   +    KD+ L      
Sbjct: 196 ALASKAGIPLDVMYDVVTNAAGNSWMFENRMKHVVEGDYTPLSMVDIFVKDLGLVNDTAK 255

Query: 407 ENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEV 511
                + +            + G G  D SAV ++
Sbjct: 256 SLHFPLHLASTAYSMFTEASNAGYGKEDDSAVIKI 290

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>3HIDH_ARATH (Q9SUC0) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 347

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 46/166 (27%), Positives = 66/166 (39%), Gaps = 12/166 (7%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           AE G L  +  G +  Y    P    +G+ S + G  GNG+  K+  N+ M   M   SE
Sbjct: 176 AEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSE 235

Query: 221 GLCLADKSGLSPQTLLDVLDLGA-------IANPMFKMKGPSMLQG-----SYNPAFPLK 364
            L L    G+S  TL +VL+  +         NP+     P +++G      YN  F  K
Sbjct: 236 ALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPV-----PGVMKGVPSSRDYNGGFASK 290

Query: 365 HQQKDMRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAV 502
              KD+ LA +  +E     P+              G    DFS V
Sbjct: 291 LMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCV 336

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>YGBJ_ECOLI (Q46888) Hypothetical oxidoreductase ygbJ (EC 1.1.-.-)|
          Length = 302

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 1/158 (0%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLG-EMGNGAKMKLVVNMIMGSMMNAFS 217
           A +G++ ++A+G    ++ + P  + +  K + +G E G G+ +K++  ++ G  + A +
Sbjct: 134 AANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGA 193

Query: 218 EGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKDMRLALS 397
           E + LA ++G+    + DV+   A  + MF+ +   ++ G Y P   +    KD+ L   
Sbjct: 194 EAMALAARAGIPLDVMYDVVTNAAGNSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVAD 253

Query: 398 LGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEV 511
                   +P+            + G G  D SAV ++
Sbjct: 254 TAKALHFPLPLASTALNMFTSASNAGYGKEDDSAVIKI 291

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>YIHU_SHIFL (P0A9V9) Hypothetical oxidoreductase yihU (EC 1.1.-.-)|
          Length = 298

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
 Frame = +2

Query: 50  GQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFS-EGL 226
           G L++LA G     +   P    +G +    G  G G ++KL+ N  M   +NA S E  
Sbjct: 131 GTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLI-NNYMSIALNALSAEAA 189

Query: 227 CLADKSGLSPQTLLDVLDLGAIANPMFKMKGPS-MLQGSYNPAFPLKHQQKDMRLALSLG 403
            L +   L     + V+   A     F    P+ +L G  +PAF +    KD+ +AL + 
Sbjct: 190 VLCEALNLPFDVAVKVMSGTAAGKGHFTTSWPNKVLSGDLSPAFMIDLAHKDLGIALDVA 249

Query: 404 DENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           ++  V MP+           R+ G G  D+SA+ E ++
Sbjct: 250 NQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVR 287

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>YIHU_ECOLI (P0A9V8) Hypothetical oxidoreductase yihU (EC 1.1.-.-)|
          Length = 298

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
 Frame = +2

Query: 50  GQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFS-EGL 226
           G L++LA G     +   P    +G +    G  G G ++KL+ N  M   +NA S E  
Sbjct: 131 GTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLI-NNYMSIALNALSAEAA 189

Query: 227 CLADKSGLSPQTLLDVLDLGAIANPMFKMKGPS-MLQGSYNPAFPLKHQQKDMRLALSLG 403
            L +   L     + V+   A     F    P+ +L G  +PAF +    KD+ +AL + 
Sbjct: 190 VLCEALNLPFDVAVKVMSGTAAGKGHFTTSWPNKVLSGDLSPAFMIDLAHKDLGIALDVA 249

Query: 404 DENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           ++  V MP+           R+ G G  D+SA+ E ++
Sbjct: 250 NQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVR 287

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>3HIDH_DROME (Q9V8M5) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 324

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           AE   L  +  G +A Y+ +    + +GKK    G  G G   KL  NM++   M   SE
Sbjct: 153 AEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSE 212

Query: 221 GLCLADKSGLSPQTLLDVLD-------LGAIANPMFKMKGPSMLQGSYNPAFPLKHQQKD 379
            + LA + GL      ++++          I NP+  +   +     Y   F      KD
Sbjct: 213 AMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFSSALITKD 272

Query: 380 MRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           + LA  + + +   +P+              GLG+ DFS V++++K
Sbjct: 273 LGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVYDLMK 318

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>MMSB_MYCTU (P63935) Probable 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)|
           (HIBADH)
          Length = 294

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 46/169 (27%), Positives = 66/169 (39%), Gaps = 8/169 (4%)
 Frame = +2

Query: 35  KPAEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAF 214
           K A    L  +  GD++      P  + +  K    G  G G   K+  NM++     A 
Sbjct: 123 KGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAI 182

Query: 215 SEGLCLADKSGLSPQTLLDVLDLGAIAN-----PMFKMKGP---SMLQGSYNPAFPLKHQ 370
           +E   LA+K GLS Q+L DV+  GA  N         + GP   S     + P F     
Sbjct: 183 AEAFVLAEKLGLSAQSLFDVI-TGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFSTALM 241

Query: 371 QKDMRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
            KD+ LA+        + P+            +    DLDFSAV   L+
Sbjct: 242 NKDLGLAMDAVAATGATAPLGSHAADIYAKF-AADHADLDFSAVIHTLR 289

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>MMSB_MYCBO (P63936) Probable 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)|
           (HIBADH)
          Length = 294

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 46/169 (27%), Positives = 66/169 (39%), Gaps = 8/169 (4%)
 Frame = +2

Query: 35  KPAEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAF 214
           K A    L  +  GD++      P  + +  K    G  G G   K+  NM++     A 
Sbjct: 123 KGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAI 182

Query: 215 SEGLCLADKSGLSPQTLLDVLDLGAIAN-----PMFKMKGP---SMLQGSYNPAFPLKHQ 370
           +E   LA+K GLS Q+L DV+  GA  N         + GP   S     + P F     
Sbjct: 183 AEAFVLAEKLGLSAQSLFDVI-TGATGNCWAVHTNCPVPGPVPTSPANNDFKPGFSTALM 241

Query: 371 QKDMRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
            KD+ LA+        + P+            +    DLDFSAV   L+
Sbjct: 242 NKDLGLAMDAVAATGATAPLGSHAADIYAKF-AADHADLDFSAVIHTLR 289

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>MMSB_PSEAE (P28811) 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (HIBADH)|
          Length = 298

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A  G L  +  G    +    P  + +G+  F  G+ G G   K+  NM++G +M   +E
Sbjct: 128 ARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAE 187

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGP-------SMLQGSYNPAFPLKHQQKD 379
            L L  K+GL P  L +V+   +  N    +  P       +     Y   F ++   KD
Sbjct: 188 ALALGVKNGLDPAVLSEVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGGFQVRLMNKD 247

Query: 380 MRLALSLGDENAVSMPV 430
           + LAL+       S P+
Sbjct: 248 LGLALANAQAVQASTPL 264

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>3HIDH_RAT (P29266) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 335

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 7/166 (4%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A  G L  +  G +  +         +G    + G +G+G   K+  NM++   M   +E
Sbjct: 165 ARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAE 224

Query: 221 GLCLADKSGLSPQTLLDVLDLGA-------IANPMFKMKGPSMLQGSYNPAFPLKHQQKD 379
            + L  +SGL P+ L  +L++ +         NP+  +        +Y   F      KD
Sbjct: 225 AMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKD 284

Query: 380 MRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           + LA          + +            S G    DFS+V + L+
Sbjct: 285 LGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQYLR 330

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>3HIDH_MOUSE (Q99L13) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 335

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 35/166 (21%), Positives = 62/166 (37%), Gaps = 7/166 (4%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A  G L  +  G +  +       + +G    + G +G G   K+  NM++   M   +E
Sbjct: 165 ARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAE 224

Query: 221 GLCLADKSGLSPQTLLDVLDLGA-------IANPMFKMKGPSMLQGSYNPAFPLKHQQKD 379
            + L  +SGL P+ L  +L++ +         NP+  +        +Y   F      KD
Sbjct: 225 AMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKD 284

Query: 380 MRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           + LA          + +            S G    DFS+V + L+
Sbjct: 285 LGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQYLR 330

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>Y770_MYCTU (P71825) Hypothetical oxidoreductase Rv0770/MT0794 (EC 1.1.-.-)|
          Length = 295

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 14/144 (9%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A  G+L ++   D   +  +   F          GE G G +MKL  NM+      A +E
Sbjct: 133 AAKGELAVMVGADDEAFQRIKEPFSRWASLLIHAGEPGAGTRMKLARNMLTFVSYAAAAE 192

Query: 221 GLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPS---MLQGSYNPAFP-------LKHQ 370
              LA+  G      LD++ LG +        G +   M + +  P  P       L+H 
Sbjct: 193 AQRLAEACG------LDLVALGKVVRHSDSFTGGAGAIMFRNTTAPMEPADPLRPLLEHT 246

Query: 371 ----QKDMRLALSLGDENAVSMPV 430
               +KD+ LAL+LG+  +V +P+
Sbjct: 247 RGLGEKDLSLALALGEVVSVDLPL 270

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>3HIDH_CAEEL (Q9XTI0) Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           (EC 1.1.1.31) (HIBADH)
          Length = 299

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +2

Query: 62  ILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADK 241
           ++ AG+ A +        ++GK    LG +GNG   K+  NM++G  M A +E + L   
Sbjct: 136 MVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGIS 195

Query: 242 SGLSPQTLLDVLD 280
            GL  + L  +++
Sbjct: 196 MGLDAKALAGIVN 208

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>3HIDH_HUMAN (P31937) 3-hydroxyisobutyrate dehydrogenase, mitochondrial|
           precursor (EC 1.1.1.31) (HIBADH)
          Length = 336

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 7/166 (4%)
 Frame = +2

Query: 41  AEDGQLVILAAGDKALYDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSE 220
           A  G L  +  G +  +         +G    + G +G G   K+  NM++   M   +E
Sbjct: 166 ARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAE 225

Query: 221 GLCLADKSGLSPQTLLDVLDLGA-------IANPMFKMKGPSMLQGSYNPAFPLKHQQKD 379
            + L  + GL P+ L  +L++ +         NP+  +        +Y   F      KD
Sbjct: 226 AMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKD 285

Query: 380 MRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           + LA          + +            + G    DFS+V + L+
Sbjct: 286 LGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLR 331

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>GATB_ANASP (Q8YX22) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 491

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +2

Query: 89  YDDMVPAFDILGKKSFFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLL 268
           YD  V   D++  + F +  + +GA  K   N I   +    ++      + GL+P  L 
Sbjct: 332 YDTRVLTEDVIVSQYFEVA-IASGANPKAAANWITQDIAAYLNKQKLSITEIGLTPANLA 390

Query: 269 DV---LDLGAIANPMFKMKGPSMLQG 337
           DV   ++ G I+N   K K P +L G
Sbjct: 391 DVITRIETGKISNAQAKQKLPELLTG 416

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>PITX1_RAT (Q99NA7) Pituitary homeobox 1|
          Length = 315

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -1

Query: 162 APFPISPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAG 37
           AP P+S +   FF SMS   + S +SA S  + MT  PSS G
Sbjct: 191 APAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMT-MPSSMG 231

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>PITX1_MOUSE (P70314) Pituitary homeobox 1 (Homeobox protein P-OTX) (Pituitary|
           OTX-related factor) (Hindlimb expressed homeobox protein
           backfoot) (Ptx1)
          Length = 315

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -1

Query: 162 APFPISPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAG 37
           AP P+S +   FF SMS   + S +SA S  + MT  PSS G
Sbjct: 191 APAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMT-MPSSMG 231

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>PITX1_HUMAN (P78337) Pituitary homeobox 1 (Hindlimb expressed homeobox protein|
           backfoot)
          Length = 314

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -1

Query: 162 APFPISPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSAG 37
           AP P+S +   FF SMS   + S +SA S  + MT  PSS G
Sbjct: 190 APAPLSTKSFTFFNSMSPLSSQSMFSAPSSISSMT-MPSSMG 230

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>RP1_BOVIN (Q8MJ05) Oxygen-regulated protein 1 (Retinitis pigmentosa RP1|
           protein homolog)
          Length = 2105

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -3

Query: 256 GAQPTFVSQTESLGESIHHTSHDHVDHQFHLCSISHLPQKERLL------PKYVKCRDHV 95
           G   T      S+G S   T  D + H+F  C ++ LP+ E+ +       K +K + HV
Sbjct: 620 GTDKTISKTPASVGNSTVTTRIDQLIHEFSHCGLTKLPENEKQISSSVASKKKMKSQQHV 679

Query: 94  I 92
           I
Sbjct: 680 I 680

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>PANX1_HUMAN (Q96RD7) Pannexin-1|
          Length = 426

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 229 TESLGESIHHTSHDHVDHQFHLCSISHLPQKERLLPKYVKCRDHVII*CLVAC 71
           TE+LG+S+   S  H  +      +        L+ KY+ CR   +I  L+AC
Sbjct: 176 TENLGQSLWEVSESHFKYPIVEQYLKTKKNSNNLIIKYISCRLLTLIIILLAC 228

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>CAPD_STAAU (P39853) Capsular polysaccharide biosynthesis protein capD|
          Length = 599

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  RHYMMTWSLHLTYLGRSRSFW 143
           R Y +TW +HL  +G SR FW
Sbjct: 106 RLYFITWMMHLLLIGGSRLFW 126

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>PITX1_CHICK (P56673) Pituitary homeobox 1 (cPTX1)|
          Length = 311

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 24/76 (31%), Positives = 32/76 (42%)
 Frame = -1

Query: 255 GLNPLLSAKQSPSEKAFIILPMIMLTTSFIFAPFPISPRKNDFFPSMSNAGTMSSYSALS 76
           G  P  S    P +  +   P     T  +  P P+S +   FF SMS   + S +SA S
Sbjct: 158 GYVPQFSGLMQPYDDMYAGYPYNNWATKSL-TPAPLSTKSFTFFNSMSPLSSQSMFSAPS 216

Query: 75  PAARMTNWPSSAGXLA 28
             + M N PS  G  A
Sbjct: 217 SISSM-NMPSGMGHSA 231

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>HBL1_CAEEL (Q9XYD3) Hunchback-like protein|
          Length = 982

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 234  AKQSPSEKAFIILPMIMLTTSFIFAPFPISPRKNDFFPS-MSNAGTMSSYSALSPAA 67
            A  SPS+   +  P   L +S I AP PI+P+ N+F  S ++ A  +    A  P+A
Sbjct: 874  APHSPSDTTSV--PSPPLHSSSIVAPIPITPQPNEFLQSILAQASLLGPLLANRPSA 928

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>JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)|
          Length = 1091

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 338 SYNPAFPLKHQQKDMRLALSLGDENAVSMPVXXXXXXXXXXXRSLGLGDLDFSAVHEVLK 517
           S +  FPL+HQQ  +  A++L   +  ++             R+L +  ++FS+V   +K
Sbjct: 343 SISNVFPLQHQQPQLNNAINLTSTSLATLCSKYGEVISARTLRNLNMALVEFSSVESAVK 402

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>PANX1_MOUSE (Q9JIP4) Pannexin-1|
          Length = 426

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 277 QDIKKRLGAQPTFVSQTESLGESIHHTSHDHVDHQFHLCSISHLPQKERLLPKYVKCRDH 98
           +D+  R G  P  V  TE++G+S+   S  H  +      +        L+ KY+ CR  
Sbjct: 161 RDLDLRDGPGPPGV--TENVGQSLWEISESHFKYPIVEQYLKTKKNSSHLIMKYISCRLV 218

Query: 97  VII*CLVAC 71
             +  L+AC
Sbjct: 219 TFVVILLAC 227

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>RPOB_STRT2 (Q5M2F5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1193

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
 Frame = +2

Query: 92  DDMVPAF---DILGKKSFFLG------------EMGNG---AKMKLVVNMI---MGSMMN 208
           DD V A    DIL + S+FL              +GN    A  +L+ N     +  M  
Sbjct: 374 DDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRVRAVGELLANQFRIGLARMER 433

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
              E + + D   L+PQ ++++  + A     F     S     +NP   L H+++
Sbjct: 434 NVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRR 489

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>RPOB_STRT1 (Q5LXV3) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1193

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
 Frame = +2

Query: 92  DDMVPAF---DILGKKSFFLG------------EMGNG---AKMKLVVNMI---MGSMMN 208
           DD V A    DIL + S+FL              +GN    A  +L+ N     +  M  
Sbjct: 374 DDKVRALTTADILAEMSYFLNLAEGIGKVDDIDHLGNRRVRAVGELLANQFRIGLARMER 433

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
              E + + D   L+PQ ++++  + A     F     S     +NP   L H+++
Sbjct: 434 NVRERMSVQDNEALTPQQIINIRPVTAAVKEFFGSSQLSQFMDQHNPLSELSHKRR 489

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>RPOB_XANOR (Q5GWS6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1383

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 502 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 557

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>RPOB_XANC5 (Q3BWZ1) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1383

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 502 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 557

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>RPOB_XANAC (Q8PNT0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1383

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 502 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 557

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>GATB_STRMU (Q8DSG6) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 479

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 134 FFLGEMGNGAKMKLVVNMIMGSMMNAFSEGLCLADKSGLSPQTLLDVLDLGA 289
           FF   +  GA  K V N + G +    +      D+ GL+P+ L ++L L A
Sbjct: 328 FFESALAQGADAKAVSNWLQGDVAQYLNTENQTIDQIGLTPENLTEMLQLVA 379

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>RPOB_XYLFT (Q87A32) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1388

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 506 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 561

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>RPOB_XYLFA (Q9PA86) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1388

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 506 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 561

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>RPOB_XANCP (Q8PC56) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1387

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 209 AFSEGLCLADKSGLSPQTLLDVLDLGAIANPMFKMKGPSMLQGSYNPAFPLKHQQK 376
           A  E L +A+  GL+PQ L++   + A     F     S      NP   + H+++
Sbjct: 506 AVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRR 561

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>EGL10_CAEEL (P49809) Regulator of G-protein signaling egl-10 (Egg-laying|
           defective protein 10)
          Length = 555

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 147 SPRKNDFFPSMSNAGTMSSYSALSPAARMTNWPSSA 40
           SPRKND  PS S+ G   S S+ +     T+ PS++
Sbjct: 266 SPRKNDQEPSTSSGGESPSTSSAAAGTATTSAPSTS 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,857,126
Number of Sequences: 219361
Number of extensions: 2179172
Number of successful extensions: 5431
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 5238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5424
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result