ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd18o14 |
|---|---|
| Clone Library Name | barley_pub |
>EXT1_DROME (Q9V730) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Protein| tout-velu) Length = 760 Score = 55.1 bits (131), Expect = 1e-07 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 1/123 (0%) Frame = +2 Query: 188 KMQAHLIPPDTPRSIFVYFRGLFYDNGNDPEGGYYARGARASLWENFKNNPLFDISTEHP 367 K H I +T S+F NG D R ++ W ++N + + E+ Sbjct: 266 KRYVHGIGSETRNSLF------HLHNGRDMVLVTTCRHGKS--WRELQDNRCDEDNREYD 317 Query: 368 ATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVF 544 YE + Q + FCL P G S R +EA+ GCIPV++++ VLPF I W + ++ Sbjct: 318 RYDYETLLQNSTFCLVPRGRRLGSFRFLEALQAGCIPVLLSNAWVLPFESKIDWKQAAIW 377 Query: 545 VDE 553 DE Sbjct: 378 ADE 380
>EXT1_CAEEL (O01704) Multiple exostoses homolog 1 (Related to mammalian RIB| protein 1) Length = 378 Score = 54.7 bits (130), Expect = 2e-07 Identities = 25/70 (35%), Positives = 39/70 (55%) Frame = +2 Query: 374 YYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 Y E + + FCL P G S R +E + GC+PV+I+D +LPF++ I W+ + V E Sbjct: 258 YDELLANSTFCLVPRGRRLGSFRFLETLRSGCVPVVISDSWILPFSETIDWNSAAIVVAE 317 Query: 554 EDVPKLDSIL 583 D + +L Sbjct: 318 RDALSIPELL 327
>EXT2_BOVIN (O77783) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (HS-polymerase) (HS-POL) (Multiple exostoses protein 2 homolog) Length = 718 Score = 51.6 bits (122), Expect = 2e-06 Identities = 27/70 (38%), Positives = 38/70 (54%) Frame = +2 Query: 374 YYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 Y + +Q A FC+ G L + + GC+PVIIAD VLPF++ + W V V E Sbjct: 308 YPQVLQEATFCMVLRGARLGQAVLSDVLRAGCVPVIIADSYVLPFSEVLDWKRASVVVPE 367 Query: 554 EDVPKLDSIL 583 E + + SIL Sbjct: 368 EKMSDVYSIL 377
>EXT1_MOUSE (P97464) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Frame = +2 Query: 317 WENFKNNPLFDISTEHPATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 493 W+ K++ +TE+ Y +M A FCL P G S R +EA+ C+PV++++ Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 363 Query: 494 IVLPFADAIPWDEIGVFVDEEDVPKLDSIL 583 LPF++ I W++ V DE + ++ S + Sbjct: 364 WELPFSEVINWNQAAVIGDERLLLQIPSTI 393
>EXT1_HUMAN (Q16394) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT1) (Multiple exostoses protein Length = 746 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Frame = +2 Query: 317 WENFKNNPLFDISTEHPATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 493 W+ K++ +TE+ Y +M A FCL P G S R +EA+ C+PV++++ Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 363 Query: 494 IVLPFADAIPWDEIGVFVDEEDVPKLDSIL 583 LPF++ I W++ V DE + ++ S + Sbjct: 364 WELPFSEVINWNQAAVIGDERLLLQIPSTI 393
>EXT1_CRIGR (Q9JK82) Exostosin-1 (EC 2.4.1.224) (EC 2.4.1.225) (Heparan sulfate| copolymerase) (Multiple exostoses protein 1 homolog) Length = 746 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%) Frame = +2 Query: 317 WENFKNNPLFDISTEHPATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 493 W+ K++ +TE+ Y +M A FCL P G S R +EA+ C+PV++++ Sbjct: 304 WQKHKDSRCDRDNTEYEKYDYREMLHNATFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 363 Query: 494 IVLPFADAIPWDEIGVFVDEEDVPKLDSIL 583 LPF++ I W++ V DE + ++ S + Sbjct: 364 WELPFSEVINWNQAAVIGDERLLLQIPSTI 393
>EXT2_HUMAN (Q93063) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXT2) (Multiple exostoses protein Length = 718 Score = 50.8 bits (120), Expect = 3e-06 Identities = 25/70 (35%), Positives = 38/70 (54%) Frame = +2 Query: 374 YYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 Y + +Q A FC+ G L + + GC+PV+IAD +LPF++ + W V V E Sbjct: 308 YPQVLQEATFCVVLRGARLGQAVLSDVLQAGCVPVVIADSYILPFSEVLDWKRASVVVPE 367 Query: 554 EDVPKLDSIL 583 E + + SIL Sbjct: 368 EKMSDVYSIL 377
>EXT2_MOUSE (P70428) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses protein 2 homolog) Length = 718 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/70 (34%), Positives = 37/70 (52%) Frame = +2 Query: 374 YYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 Y + +Q A FC L + + GC+PV+IAD +LPF++ + W + V V E Sbjct: 308 YPQVLQEATFCTVLRRARLGQAVLSDVLQAGCVPVVIADSYILPFSEVLDWKKASVVVPE 367 Query: 554 EDVPKLDSIL 583 E + + SIL Sbjct: 368 EKMSDVYSIL 377
>EXT1C_BRARE (Q5IGR6) Exostosin-1c (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1c) (Multiple exostoses protein 1 homolog c) Length = 737 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = +2 Query: 317 WENFKNNPLFDISTEHPATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 493 WE K+ + E+ Y+++ + FCL P G S R +E++ CIPV++++ Sbjct: 296 WEKHKDARCDHDNQEYERFDYQELLHNSTFCLVPRGRRLGSFRFLESLQAACIPVLLSNG 355 Query: 494 IVLPFADAIPWDEIGVFVDE 553 LPF+D I W++ V DE Sbjct: 356 WELPFSDVIQWNQAVVEGDE 375
>EXT1B_BRARE (Q5IGR7) Exostosin-1b (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1b) (Multiple exostoses protein 1 homolog b) Length = 741 Score = 46.6 bits (109), Expect = 5e-05 Identities = 22/60 (36%), Positives = 34/60 (56%) Frame = +2 Query: 374 YYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 Y E + + FCL P G S R +EA+ C+PV++++ LPF++ I W+ V DE Sbjct: 319 YREMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEVIDWNTAAVIGDE 378
>EXT1A_BRARE (Q5IGR8) Exostosin-1a (EC 2.4.1.224) (EC 2.4.1.225)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan/N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase 1a) (Multiple exostoses protein 1 homolog a) Length = 730 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +2 Query: 317 WENFKNNPLFDISTEHPATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADD 493 W+ K+ + E+ Y++M + FCL P G S R +EA+ C+PV++++ Sbjct: 288 WQKHKDARCDKDNAEYDRYDYKEMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNG 347 Query: 494 IVLPFADAIPWDEIGVFVDE 553 LPF++ I W V DE Sbjct: 348 WELPFSEIIDWRTAAVIGDE 367
>EXT2_DROME (Q9Y169) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (Protein sister| of tout-velu) Length = 717 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +2 Query: 350 ISTEHPATYYEDM-QRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPW 526 +S H + Y + R FCL P LVE + CIPVI D+ VLPF D I W Sbjct: 299 LSQHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHCIPVIAVDNYVLPFEDVIDW 358 Query: 527 DEIGVFVDEEDV 562 V + E ++ Sbjct: 359 SLASVRIRENEL 370
>EXTL1_MOUSE (Q9JKV7) Exostosin-like 1 (EC 2.4.1.224)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L) (Multiple exostosis-like protein) Length = 669 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/58 (34%), Positives = 32/58 (55%) Frame = +2 Query: 380 EDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 E + A FCL P G + ++A+ GCIPV+++ LPF++ I W + + DE Sbjct: 259 ETLPNATFCLIP-GHRSATSCFLQALQAGCIPVLLSPRWELPFSEVIDWTKAAIIADE 315
>EXTL1_HUMAN (Q92935) Exostosin-like 1 (EC 2.4.1.224)| (Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Exostosin-L) (Multiple exostosis-like protein) Length = 676 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/58 (32%), Positives = 31/58 (53%) Frame = +2 Query: 380 EDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDE 553 E + A FCL + R ++A+ GCIPV+++ LPF++ I W + + DE Sbjct: 265 ETLPNATFCLISGHRPEAASRFLQALQAGCIPVLLSPRWELPFSEVIDWTKAAIVADE 322
>EXTL3_HUMAN (O43909) Exostosin-like 3 (EC 2.4.1.223)| (Glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Putative tumor suppressor protein EXTL3) (Multiple exostosis-like protein 3) (Hereditary multiple exostoses gene isolog) (E Length = 919 Score = 38.1 bits (87), Expect = 0.019 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +2 Query: 440 RLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDEEDVPKLDSIL 583 RL EA+ G +PV++ + + LP+ D + W+E + V + V ++ +L Sbjct: 450 RLFEALEVGAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLL 497
>EXTL3_MOUSE (Q9WVL6) Exostosin-like 3 (EC 2.4.1.-) (Multiple exostosis-like| protein 3) Length = 918 Score = 37.7 bits (86), Expect = 0.024 Identities = 15/48 (31%), Positives = 29/48 (60%) Frame = +2 Query: 440 RLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDEEDVPKLDSIL 583 RL EA+ G +PV++ + + LP+ D + W+E + V + V ++ +L Sbjct: 449 RLFEALEVGAVPVVLGEQVQLPYHDMLQWNEAALVVPKPRVTEVHFLL 496
>EXT3_DROME (Q9XZ08) Exostosin-3 (EC 2.4.1.223) (Protein brother of tout-velu)| Length = 972 Score = 33.5 bits (75), Expect = 0.46 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = +2 Query: 440 RLVEAVVFGCIPVII-ADDIVLPFADAIPWDEIGVFVDEEDVPKLDSIL 583 R+ EA+ G +PVI+ AD++ LP+A+ + W + + + + +L +L Sbjct: 500 RIYEALRSGAVPVILGADELRLPYAETVDWRRTALLLPKARITELHFLL 548
>OR94B_DROME (Q9VCS8) Putative odorant receptor 94b| Length = 383 Score = 32.7 bits (73), Expect = 0.79 Identities = 21/81 (25%), Positives = 35/81 (43%) Frame = +2 Query: 287 YYARGARASLWENFKNNPLFDISTEHPATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFG 466 +Y R ASL +++P F++ +++ QR + W W V V G Sbjct: 91 WYRRHEAASLIHELQHDPAFNLRNSEEIKFWQQNQRNFKRI--FYWYIWGSLFV--AVMG 146 Query: 467 CIPVIIADDIVLPFADAIPWD 529 I V +D LPF +P++ Sbjct: 147 YISVFFQEDYELPFGYYVPFE 167
>EXT2_CAEEL (O01705) Exostosin-2 (EC 2.4.1.223) (EC 2.4.1.224)| (Glucuronyl-galactosyl-proteoglycan/Glucuronosyl-N- acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase) (Multiple exostoses homolog 2) Length = 814 Score = 32.0 bits (71), Expect = 1.3 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +2 Query: 446 VEAVVFGCIPVIIADDIVLPFADAIPW 526 + ++ GCIP+I+++ +LPF D I W Sbjct: 351 LSSLQLGCIPIILSNSQLLPFQDLIDW 377
>COG1_HUMAN (Q8WTW3) Conserved oligomeric Golgi complex component 1| Length = 980 Score = 30.8 bits (68), Expect = 3.0 Identities = 13/60 (21%), Positives = 30/60 (50%) Frame = +2 Query: 377 YEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIVLPFADAIPWDEIGVFVDEE 556 +++++ + +G+ WS +V+ ++ G ++ DD A A WDE+ + + E Sbjct: 667 WQEVKEVLLQQSVMGYQVWSSAVVKVLIHGFTQSLLLDDAGSVLATATSWDELEIQEEAE 726
>ACT9_ARATH (P93738) Putative actin-9| Length = 366 Score = 30.4 bits (67), Expect = 3.9 Identities = 19/75 (25%), Positives = 35/75 (46%) Frame = -1 Query: 388 HIFIVGGRVFGGDIKERIVLEVLPQ*SSSTSCIIPTLRVVPIIIEQTSEVNEY*TGSIRR 209 +I + GG IKER+ E+ + ++P+ V +++ SE + + GSI Sbjct: 287 NILMTGGTTMLHGIKERMTKEL--------NALVPSSMKVKVVVPPESECSVWIGGSILA 338 Query: 208 NQVSLHFLWWRKWRY 164 + + H +W K Y Sbjct: 339 SLSTFHQMWITKDEY 353
>SO2B1_HUMAN (O94956) Solute carrier organic anion transporter family member 2B1| (Solute carrier family 21 member 9) (Organic anion transporter B) (OATP-B) (Organic anion transporter polypeptide-related protein 2) (OATP-RP2) (OATPRP2) Length = 709 Score = 30.0 bits (66), Expect = 5.1 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%) Frame = +1 Query: 94 TPCYIGSNIWTEESCLLERGIYYDTAICATTEN---AGSLDSS 213 TPC+ G + W + L ++Y C N AGS DS+ Sbjct: 514 TPCHAGCSSWVVQDALDNSQVFYTNCSCVVEGNPVLAGSCDST 556
>LFNG_BRARE (Q8JHF2) Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 374 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = -1 Query: 523 RDCISKRQHDVVSYDNWNAAKYHSLNQPRTPWCPPQRA 410 R+ I+ + V D H L P TPWCPPQ A Sbjct: 336 RNIINMKGAFSVEEDPSRFKSVHCLLYPDTPWCPPQVA 373
>ECA3_ARATH (Q9SY55) Calcium-transporting ATPase 3, endoplasmic reticulum-type| (EC 3.6.3.8) Length = 998 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 362 HPATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVIIADDIV 499 H Y +F + PL WA W+ AV++ PVII D+++ Sbjct: 930 HVLILYVHPLAVLFSVTPLSWAEWT-----AVLYLSFPVIIIDELL 970
>PCDG5_PANTR (Q5DRB5) Protocadherin gamma A5 precursor (PCDH-gamma-A5)| Length = 931 Score = 29.3 bits (64), Expect = 8.7 Identities = 18/72 (25%), Positives = 32/72 (44%) Frame = +2 Query: 128 KNHVCLKEGSITIPPFAPPQKMQAHLIPPDTPRSIFVYFRGLFYDNGNDPEGGYYARGAR 307 ++H+ LK + P PQ + +P + PR + +F +DP+ G AR Sbjct: 435 ESHIPLKVADVNDNPPNFPQASYSTSVPENNPRGV-----SIFSVTAHDPDSGDNARVTY 489 Query: 308 ASLWENFKNNPL 343 + + F+ PL Sbjct: 490 SLAEDTFQGAPL 501
>KATAM_ARATH (Q7XJ98) Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-)| (MURUS3 protein) Length = 619 Score = 29.3 bits (64), Expect = 8.7 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +2 Query: 365 PATYYEDMQRAVFCLCPLGWAPWSPRLVEAVVFGCIPVII-ADDIVLPFADAIP--WDEI 535 P++ + Q ++FCL P G + ++++ GCIPV + +P + Sbjct: 410 PSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTTY 469 Query: 536 GVFVDEEDVPK 568 VF+ E+DV K Sbjct: 470 SVFIPEDDVRK 480 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,139,073 Number of Sequences: 219361 Number of extensions: 2229504 Number of successful extensions: 6153 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 5838 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6146 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
