ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd19d11 |
|---|---|
| Clone Library Name | barley_pub |
>DDX51_BRARE (Q6DRI7) ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box| protein 51) Length = 652 Score = 65.1 bits (157), Expect = 1e-10 Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 10/137 (7%) Frame = +3 Query: 120 LAKIVCSATLTQDPSKXXXXXXXXXXXXNS----------GKKRYRIPEKLESYKLICTS 269 L K++ SATLTQ+P K +S + + P+ L Y + CT Sbjct: 415 LQKLLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPAQSQDTFHFPQGLSEYYVPCTF 474 Query: 270 NIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRK 449 + KPL ++ L L+ L FT S + +HRL L+ F + + +EFSS R+K Sbjct: 475 SKKPLIILHFLLRLKFSPALCFTNSREGAHRLYLLVKLFGGV--EVAEFSSKLSPGERQK 532 Query: 450 TLAAFKEGEIDVLIGSD 500 TL F++G+I +LI +D Sbjct: 533 TLKDFEKGKIPLLISTD 549
>DDX51_MOUSE (Q6P9R1) ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box| protein 51) Length = 639 Score = 61.6 bits (148), Expect = 1e-09 Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 19/150 (12%) Frame = +3 Query: 108 CYPR--LAKIVCSATLTQDPSKXXXXXX-----------------XXXXXXNSGKKRYRI 230 C P+ L K++ SATLTQDP K NSGK Y Sbjct: 391 CVPQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDTAEVDENSGK--YTF 448 Query: 231 PEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFS 410 P L + + C + KPL ++ L+ + + L FT S ++SHRL L F + + Sbjct: 449 PVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGGV--SVA 506 Query: 411 EFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 EFSS R+K L F++G+I +LI +D Sbjct: 507 EFSSRYGPGQRKKILKQFEQGKIQLLISTD 536
>DDX51_HUMAN (Q8N8A6) ATP-dependent RNA helicase DDX51 (EC 3.6.1.-) (DEAD box| protein 51) Length = 666 Score = 60.5 bits (145), Expect = 3e-09 Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 16/147 (10%) Frame = +3 Query: 108 CYPR--LAKIVCSATLTQDPSKXXXXXXXXXXXXNSG--------------KKRYRIPEK 239 C P+ L K++ SATLTQ+P K ++G +Y P Sbjct: 419 CCPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTDGDGDSGKYAFPVG 478 Query: 240 LESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFS 419 L + + C+ + KPL ++ L+ E+ + L FT S ++SHRL L+ F + +EFS Sbjct: 479 LTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGV--DVAEFS 536 Query: 420 SLQRESTRRKTLAAFKEGEIDVLIGSD 500 S RR L F++G+I +LI +D Sbjct: 537 SRYGPGQRRMILKQFEQGKIQLLISTD 563
>DBP6_CANGA (Q6FST5) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-)| Length = 651 Score = 46.6 bits (109), Expect = 4e-05 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 13/140 (9%) Frame = +3 Query: 120 LAKIVCSATLTQDPSKXXXXXXXX-XXXXNSGKKRYRIPEKLESYKL---ICTSNIKPLC 287 + K+V SATLT + K K Y +P L+ Y+L S KPL Sbjct: 393 IIKMVFSATLTTNTEKLNDLQLYNPTLFATDSVKLYNLPPTLQEYQLQIPSAKSVYKPLY 452 Query: 288 LIVLLQELRGEKCLVFTKSXDDSHRLSTLL-----GFFEDLPFKFSEFSSLQRESTRRKT 452 L+ LL++L G K LVF +S + S +L LL G L +S ++ R+ Sbjct: 453 LLKLLEQLSGGKTLVFVRSNESSLKLEVLLKSLIKGHMTTLQIVVHSINSNNSKAENRRL 512 Query: 453 LAAFKE----GEIDVLIGSD 500 + F + + +VLI +D Sbjct: 513 VTDFTKESLPNQTNVLITTD 532
>DBP6_SCHPO (Q76PD3) ATP-dependent RNA helicase dbp6 (EC 3.6.1.-)| Length = 604 Score = 44.7 bits (104), Expect = 1e-04 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 18/145 (12%) Frame = +3 Query: 120 LAKIVCSATLTQDPSKXXXXXXXXXXXXNSGKKR---------------YRIPEKLESYK 254 L K+V SATLT+DPSK K + +P L+ Y Sbjct: 352 LQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYH 411 Query: 255 LICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDL---PFKFSEFSSL 425 + S+ KP+ L L+ L F KS + + RL LL + F F+S Sbjct: 412 -VSVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSS 470 Query: 426 QRESTRRKTLAAFKEGEIDVLIGSD 500 R+K ++ F G++++L+ SD Sbjct: 471 LSRDERKKIISRFATGDLNLLVCSD 495
>DBP6_YARLI (Q6CDN5) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-)| Length = 607 Score = 42.7 bits (99), Expect = 5e-04 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 5/129 (3%) Frame = +3 Query: 129 IVCSATLTQDPSKXXXXXXXXXXXXNSGKK-RYRIPEKLESYKLICTSNIKPLCLIVLLQ 305 ++ SATLT +P G Y IP+ L ++ KPL L LL Sbjct: 388 LIFSATLTANPEHIASMDIHNPGVFVIGSSDSYSIPKSLTEIVTHVSAAEKPLMLCELLV 447 Query: 306 ELRGEKCLVFTKSXDDSHRLSTLLGFFE-DLPFKFSEFSSLQREST---RRKTLAAFKEG 473 + + +VFTKS + + R++ ++ + D+ K + +++ E++ RR+++ F +G Sbjct: 448 QRDINRGVVFTKSSETAARVARMMEIMDADIFHKDWKIAAVSAETSSVHRRRSMKQFIDG 507 Query: 474 EIDVLIGSD 500 +ID L+ +D Sbjct: 508 KIDFLVCTD 516
>DBP6_DEBHA (Q6BPT8) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-)| Length = 679 Score = 42.4 bits (98), Expect = 7e-04 Identities = 44/154 (28%), Positives = 63/154 (40%), Gaps = 16/154 (10%) Frame = +3 Query: 87 ERGFKGKCYPRLAKIVCSATLTQDPSKXXXXXXXXXXXXNSGKKR------YRIPEKLES 248 ER + K++ SATLT D K K + +P L Sbjct: 424 ERNISNSWKLNVQKMIFSATLTTDAGKLSLLKFHKPRLIIVNNKEQLVNEMFSLPATLNE 483 Query: 249 YKL---ICTSNIKPLCLI-VLLQELRGEKCLVFTKSXDDSHRLSTLLGFF------EDLP 398 +KL S++KPL L LL + + L+FTKS D S RLS LL E + Sbjct: 484 FKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKSNDASLRLSRLLSLIMNKLGSETIN 543 Query: 399 FKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 + S+ S R K L F + I++L+ +D Sbjct: 544 IAYIN-STNNTTSVRSKILKDFSKQTINILVATD 576
>RRP3_CRYNE (Q5KBE2) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 484 Score = 40.8 bits (94), Expect = 0.002 Identities = 33/121 (27%), Positives = 49/121 (40%) Frame = +3 Query: 138 SATLTQDPSKXXXXXXXXXXXXNSGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRG 317 SAT+T +K K + L+ Y L+ N K L+ L EL Sbjct: 219 SATMTTKVAKLQRASLNKPVRVEVSSKYSTVSTLLQHYLLLPLKN-KDAYLLYLANELSS 277 Query: 318 EKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGS 497 ++FT++ DS RLS +L L F +S R +L FK G +L+ + Sbjct: 278 SSMMIFTRTVADSQRLSIIL---RRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVAT 334 Query: 498 D 500 D Sbjct: 335 D 335
>RRP3_YEAST (P38712) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-) (Ribosomal| RNA-processing protein RRP3) Length = 501 Score = 39.3 bits (90), Expect = 0.006 Identities = 24/94 (25%), Positives = 45/94 (47%) Frame = +3 Query: 219 RYRIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLP 398 +Y+ + L ++ +K LI LL E G+ ++FT++ ++ RLS L E Sbjct: 289 KYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLE--- 345 Query: 399 FKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 F + ++ R +L FK G+ +L+ +D Sbjct: 346 FSATALHGDLNQNQRMGSLDLFKAGKRSILVATD 379
>RRP3_CANGA (Q6FNK8) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 493 Score = 38.9 bits (89), Expect = 0.008 Identities = 24/94 (25%), Positives = 44/94 (46%) Frame = +3 Query: 219 RYRIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLP 398 +Y+ + L ++ +K LI LL E G+ ++FT++ ++ RLS L E Sbjct: 281 KYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIGKTVIIFTRTKANAERLSGLCNLLE--- 337 Query: 399 FKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 F + ++ R L FK G+ +L+ +D Sbjct: 338 FSATALHGDLNQNQRTGALDLFKAGKRSILVATD 371
>RRP3_ASPOR (Q2UNB7) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)| Length = 472 Score = 36.6 bits (83), Expect = 0.039 Identities = 22/75 (29%), Positives = 35/75 (46%) Frame = +3 Query: 276 KPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTL 455 K L L+ LL E G+ C++F ++ ++ RLS F L F +S R L Sbjct: 279 KDLYLVYLLNEFVGQSCIIFCRTVHETQRLSF---FLRLLGFGAIPLHGQLSQSARLGAL 335 Query: 456 AAFKEGEIDVLIGSD 500 F+ D+L+ +D Sbjct: 336 GKFRSRSRDILVATD 350
>DRS1_CRYNE (Q5KIK3) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 808 Score = 35.8 bits (81), Expect = 0.066 Identities = 20/71 (28%), Positives = 35/71 (49%) Frame = +3 Query: 288 LIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTLAAFK 467 L+ L + EKC++F +S +H++ + G F K +E + R + L FK Sbjct: 460 LLALCKRTIREKCIIFFRSKALAHQMRIVFGLF---GLKAAELHGNLTQEQRLQALNDFK 516 Query: 468 EGEIDVLIGSD 500 G +D L+ +D Sbjct: 517 AGTVDYLLATD 527
>HAS1_ASHGO (Q74Z73) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 504 Score = 34.7 bits (78), Expect = 0.15 Identities = 25/96 (26%), Positives = 44/96 (45%) Frame = +3 Query: 213 KKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFED 392 +K + LE ++C S+ + L L L++ + +K +VF S + + LL + D Sbjct: 252 EKETSTADGLEQGYVVCDSDKRFLLLFTFLKKFQNKKIIVFLSSCNSVKYYAELLNYI-D 310 Query: 393 LPFKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 LP E Q++ R T F E +L+ +D Sbjct: 311 LP--VLELHGKQKQQKRTNTFFEFCNAERGILVCTD 344
>DDX27_MOUSE (Q921N6) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)| (DEAD box protein 27) Length = 760 Score = 34.7 bits (78), Expect = 0.15 Identities = 19/68 (27%), Positives = 35/68 (51%) Frame = +3 Query: 297 LLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTLAAFKEGE 476 LL + ++FT++ +HR+ LLG L + E ++ R + L FK+ + Sbjct: 423 LLMRTFTDHVMLFTQTKKQAHRMHILLGL---LGLQVGELHGNLSQTQRLEALRRFKDEQ 479 Query: 477 IDVLIGSD 500 ID+L+ +D Sbjct: 480 IDILVATD 487
>RRP3_USTMA (Q4P3U9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 551 Score = 34.3 bits (77), Expect = 0.19 Identities = 26/94 (27%), Positives = 38/94 (40%) Frame = +3 Query: 219 RYRIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLP 398 +Y L+ + + K L+ L E G +VFT++ DS RLS LL L Sbjct: 311 KYTTVSTLKQHYMFMPFAHKDTYLVHLANEQAGHSIIVFTRTVHDSQRLSILLRL---LG 367 Query: 399 FKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 F + R L FK G +L+ +D Sbjct: 368 FPAIPLHGQLSQQARLGALNKFKTGGRSILVATD 401
>DDX27_HUMAN (Q96GQ7) Probable ATP-dependent RNA helicase DDX27 (EC 3.6.1.-)| (DEAD box protein 27) Length = 796 Score = 33.5 bits (75), Expect = 0.33 Identities = 18/68 (26%), Positives = 35/68 (51%) Frame = +3 Query: 297 LLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTLAAFKEGE 476 LL + ++FT++ +HR+ LLG + + E ++ R + L FK+ + Sbjct: 457 LLTRTFTDHVMLFTQTKKQAHRMHILLGL---MGLQVGELHGNLSQTQRLEALRRFKDEQ 513 Query: 477 IDVLIGSD 500 ID+L+ +D Sbjct: 514 IDILVATD 521
>DBP6_YEAST (P53734) ATP-dependent RNA helicase DBP6 (EC 3.6.1.-) (DEAD box| protein 6) Length = 629 Score = 33.5 bits (75), Expect = 0.33 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 9/110 (8%) Frame = +3 Query: 126 KIVCSATLTQDPSKXXXXXXXX-XXXXNSGKKRYRIPEKLESYKL---ICTSNIKPLCLI 293 K++ SATLT + K K Y++P KL + + S KPL L+ Sbjct: 376 KMIFSATLTTNTEKLNGLNLYKPKLFLKQTDKLYQLPNKLNEFNINIPTAKSVYKPLILL 435 Query: 294 VLLQELRGE-----KCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQ 428 + + K L+F KS + S RLS LL + + S +LQ Sbjct: 436 YSICQFMAHSPIAAKILIFVKSNESSIRLSKLLQLICESRSQSSVLKNLQ 485
>DRS1_ASPFU (Q4WRV2) ATP-dependent RNA helicase drs1 (EC 3.6.1.-)| Length = 830 Score = 33.1 bits (74), Expect = 0.43 Identities = 18/71 (25%), Positives = 36/71 (50%) Frame = +3 Query: 288 LIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTLAAFK 467 L+ L E+ + +VF + ++HR+ + G L K +E + R K++ F+ Sbjct: 546 LLYLCNEIYTGRVIVFFRQKREAHRVRIVFGL---LGLKAAELHGSMSQEQRIKSVENFR 602 Query: 468 EGEIDVLIGSD 500 EG++ L+ +D Sbjct: 603 EGKVAFLLATD 613
>SYM_BACHD (Q9KGK8) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 660 Score = 32.0 bits (71), Expect = 0.95 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Frame = +3 Query: 207 SGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGE--KCLVFTKSXDDSHRLSTLLG 380 SG +Y P L K+IC +N+KP+ +LRGE + ++ S D RL+T+ G Sbjct: 599 SGIAKYYSPSDLIGKKVICVTNLKPV-------KLRGELSQGMILAGSEGDQLRLATVDG 651
>HAS1_YARLI (Q6C7D2) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 605 Score = 32.0 bits (71), Expect = 0.95 Identities = 26/89 (29%), Positives = 40/89 (44%) Frame = +3 Query: 234 EKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSE 413 E LE ++C S+ + L L L+ G+K +VF S + LL + DLP + Sbjct: 350 EGLEQGYVVCDSDKRFLLLFSFLKRNAGKKIIVFLSSCNSVKFYGELLNYI-DLP--VLD 406 Query: 414 FSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 Q++ R T F + VLI +D Sbjct: 407 LHGKQKQQKRTNTFFEFINAKQGVLICTD 435
>SPB4_SCHPO (O74764) ATP-dependent rRNA helicase spb4 (EC 3.6.1.-)| Length = 606 Score = 32.0 bits (71), Expect = 0.95 Identities = 23/82 (28%), Positives = 35/82 (42%) Frame = +3 Query: 225 RIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFK 404 R P L L+ K C+I LL + EK +VF S ++L ++ LPF+ Sbjct: 226 RTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYK-LPFE 284 Query: 405 FSEFSSLQRESTRRKTLAAFKE 470 Q +S R + FK+ Sbjct: 285 IVALHGQQVQSNRSRNFEKFKK 306
>HAS1_YEAST (Q03532) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-) (Helicase| associated with SET1 protein 1) Length = 505 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/87 (28%), Positives = 40/87 (45%) Frame = +3 Query: 240 LESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFS 419 LE ++C S+ + L L L+ + +K +VF S + + LL + DLP E Sbjct: 264 LEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYI-DLP--VLELH 320 Query: 420 SLQRESTRRKTLAAFKEGEIDVLIGSD 500 Q++ R T F E +LI +D Sbjct: 321 GKQKQQKRTNTFFEFCNAERGILICTD 347
>HAS1_CANGA (Q6FIL3) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 494 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/87 (28%), Positives = 40/87 (45%) Frame = +3 Query: 240 LESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFS 419 LE ++C S+ + L L L+ + +K +VF S + + LL + DLP E Sbjct: 251 LEQGYVVCESDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYI-DLP--VLELH 307 Query: 420 SLQRESTRRKTLAAFKEGEIDVLIGSD 500 Q++ R T F E +LI +D Sbjct: 308 GKQKQQKRTNTFFEFCNAERGILICTD 334
>HAS1_KLULA (Q6CXB7) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 497 Score = 31.2 bits (69), Expect = 1.6 Identities = 24/87 (27%), Positives = 40/87 (45%) Frame = +3 Query: 240 LESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFS 419 LE ++C S+ + L L L+ + +K +VF S + + LL + DLP E Sbjct: 256 LEQGYVVCESDKRFLLLFSFLKRNQKKKVIVFLSSCNSVKYYAELLNYI-DLP--VLELH 312 Query: 420 SLQRESTRRKTLAAFKEGEIDVLIGSD 500 Q++ R T F E +L+ +D Sbjct: 313 GKQKQQKRTNTFFEFCNAERGILVCTD 339
>HAS1_USTMA (Q4P6N0) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 517 Score = 30.4 bits (67), Expect = 2.8 Identities = 23/88 (26%), Positives = 40/88 (45%) Frame = +3 Query: 237 KLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEF 416 +LE ++C S+ + L L L++ G+K +VF S + S LL F D+P + Sbjct: 271 RLEQGYVVCESDRRFLLLFTFLKKNAGKKIIVFMSSCNSVKYHSDLLNFI-DVP--VLDL 327 Query: 417 SSLQRESTRRKTLAAFKEGEIDVLIGSD 500 Q++ R T + L+ +D Sbjct: 328 HGKQKQQKRTNTFFEYCNAPCGTLLCTD 355
>YN21_CAEEL (P34580) Putative ATP-dependent RNA helicase T26G10.1 in chromosome| III (EC 3.6.1.-) Length = 489 Score = 30.0 bits (66), Expect = 3.6 Identities = 26/121 (21%), Positives = 49/121 (40%) Frame = +3 Query: 138 SATLTQDPSKXXXXXXXXXXXXNSGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRG 317 SAT+T+ SK S RY+ + L+ + + + K L+ LL E G Sbjct: 225 SATMTKKVSKLERASLRDPARV-SVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAG 283 Query: 318 EKCLVFTKSXDDSHRLSTLLGFFEDLPFKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGS 497 +VF + + +++ +L L + + R +L FK ++L+ + Sbjct: 284 NSAIVFCATCATTMQIAVML---RQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCT 340 Query: 498 D 500 D Sbjct: 341 D 341
>SYM_BACSU (P37465) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 664 Score = 30.0 bits (66), Expect = 3.6 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 207 SGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGE 320 SG ++ PE+L KL+C +N+KP+ +LRGE Sbjct: 603 SGIAKHYTPEELVGKKLVCVTNLKPV-------KLRGE 633
>SPB4_DEBHA (Q6BSM3) ATP-dependent rRNA helicase SPB4 (EC 3.6.1.-)| Length = 614 Score = 30.0 bits (66), Expect = 3.6 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +3 Query: 288 LIVLLQELRGEKCLV-FTKSXDDSHRLS---TLLGFFEDLPFKFSEFSSLQRESTRRKTL 455 LI L+++ R +KC+V F H S TL+ E+ +KF R KTL Sbjct: 264 LIALIKDYRFQKCIVYFPTCTSVKHFYSVFQTLVNVEEEDRYKFFSLHGQLSTKPRLKTL 323 Query: 456 AAFKEGE 476 F EG+ Sbjct: 324 QNFSEGD 330
>MFD_MYXXA (O52236) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1201 Score = 30.0 bits (66), Expect = 3.6 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 384 FEDLPFKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGS 497 F D P S L++ R+ L KEG++D+LIG+ Sbjct: 728 FADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGT 765
>SYM1_BACCR (Q81JA8) Methionyl-tRNA synthetase 1 (EC 6.1.1.10)| (Methionine--tRNA ligase 1) (MetRS 1) Length = 660 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 207 SGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGE 320 SG ++ PE L+ K+IC +N+KP+ +LRGE Sbjct: 599 SGIAKFYSPEDLKGKKVICVTNLKPV-------KLRGE 629
>SYM1_BACAN (Q81W03) Methionyl-tRNA synthetase 1 (EC 6.1.1.10)| (Methionine--tRNA ligase 1) (MetRS 1) Length = 660 Score = 29.6 bits (65), Expect = 4.7 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 207 SGKKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGE 320 SG ++ PE L+ K+IC +N+KP+ +LRGE Sbjct: 599 SGIAKFYSPEDLKGKKVICVTNLKPV-------KLRGE 629
>SYM_PICTO (Q6L1M5) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 690 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 6/59 (10%) Frame = +3 Query: 207 SGKKRYRIPEKLESYKLICTSNIKPLCL------IVLLQELRGEKCLVFTKSXDDSHRL 365 S K+Y PE L+ +++ N+KP + +++ GE+ ++ + DD R+ Sbjct: 573 SNIKKYLTPENLQGRRILLIRNVKPATIRGIKSEAIIIAVQHGERIIIPEVNADDGSRM 631
>HAS1_GIBZE (Q4IEK8) ATP-dependent RNA helicase HAS1 (EC 3.6.1.-)| Length = 590 Score = 29.3 bits (64), Expect = 6.2 Identities = 26/96 (27%), Positives = 43/96 (44%) Frame = +3 Query: 213 KKRYRIPEKLESYKLICTSNIKPLCLIVLLQELRGEKCLVFTKSXDDSHRLSTLLGFFED 392 +K+Y E LE +IC ++++ L L L+ +K +VF S + LL + D Sbjct: 327 EKQYSTVEGLEQGYIICETDMRFLLLFSFLKRNLKKKIIVFFSSCACVKYHAELLNYI-D 385 Query: 393 LPFKFSEFSSLQRESTRRKTLAAFKEGEIDVLIGSD 500 LP + Q++ R T F + LI +D Sbjct: 386 LP--VLDLHGKQKQQKRTNTFFEFCNAKQGTLICTD 419 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,894,936 Number of Sequences: 219361 Number of extensions: 1139455 Number of successful extensions: 2630 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2585 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2623 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
