>SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)|
          Length = 266

 Score =  191 bits (486), Expect = 1e-48
 Identities = 98/169 (57%), Positives = 125/169 (73%)
 Frame = +2

Query: 95  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQE 274
           MTVIDILTRVD+IC+KYDKYD +K   AN++G+D FARLYG+ + +I   +EKAE   +E
Sbjct: 1   MTVIDILTRVDSICKKYDKYDVDKQREANISGDDAFARLYGAFETQIETALEKAELVTKE 60

Query: 275 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 454
           KNRAA VA+NAEIRR KA+L EE +PKLQRLA+K+VKGLT EELA R+DLV ALP RI++
Sbjct: 61  KNRAAAVAMNAEIRRTKARLSEE-VPKLQRLAVKRVKGLTTEELAARNDLVLALPARIEA 119

Query: 455 IPDGSSSATKKNXXXXXXXXXXXXXVKFDSTSDGNFDDEYFKGTEESNK 601
           IPDG++   K               +KFD  SDG FDD+YF+ + ES++
Sbjct: 120 IPDGTAGGPKSTSAWTPSSTTSRPDIKFD--SDGRFDDDYFQESNESSQ 166

>SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)|
          Length = 267

 Score =  160 bits (404), Expect = 4e-39
 Identities = 84/169 (49%), Positives = 116/169 (68%)
 Frame = +2

Query: 95  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQE 274
           M VIDI+ RVD IC+KYDKYD +K      +G+D F+RL+ S+D++I   + KAE A  E
Sbjct: 1   MPVIDIIFRVDEICKKYDKYDIDKHREIGASGDDAFSRLFTSIDSDIEAVLRKAELASTE 60

Query: 275 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 454
           KNRAA VA+NAE+RR KA+ L ED+ KLQ+LA+KK+KGLT+EE  +R DLV AL DR+Q+
Sbjct: 61  KNRAAAVAMNAEVRRTKAR-LAEDVVKLQKLAVKKIKGLTREERESRCDLVIALADRLQA 119

Query: 455 IPDGSSSATKKNXXXXXXXXXXXXXVKFDSTSDGNFDDEYFKGTEESNK 601
           IPDG+    K+              +KFD  S+ + DD +F+ +EES++
Sbjct: 120 IPDGNEHGAKQANSDWGGASAPNKNIKFD-MSEEDMDDGFFQQSEESSQ 167

>SYP73_ARATH (Q94KK5) Syntaxin-73 (AtSYP73)|
          Length = 263

 Score =  149 bits (375), Expect = 9e-36
 Identities = 80/170 (47%), Positives = 113/170 (66%), Gaps = 1/170 (0%)
 Frame = +2

Query: 95  MTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQE 274
           M VID++TRVD+IC+KY+KYD  +   ANV+G+D F+RLY +V+  +   ++K E    E
Sbjct: 1   MGVIDLITRVDSICKKYEKYDINRQRDANVSGDDAFSRLYSAVEYALETVLQKTEDLSSE 60

Query: 275 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQS 454
            N+A  VA+NAEIRR KA+LL E +PKLQRL+LKKVKGL+KEEL  R+DLV +L D+I++
Sbjct: 61  TNKAKAVAMNAEIRRTKARLL-EGIPKLQRLSLKKVKGLSKEELDARNDLVLSLRDKIEA 119

Query: 455 IPDGSSSATKKNXXXXXXXXXXXXXVKFD-STSDGNFDDEYFKGTEESNK 601
           IP+ S+                   ++FD + SD     EYF+ T ES++
Sbjct: 120 IPESSAPVV-----GGWEASTSYSNIRFDTNVSDDRIGSEYFQPTGESDQ 164

>Y410_LISIN (Q7AP31) UPF0365 protein lin0410|
          Length = 314

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +2

Query: 218 SVDAEISQCV---EKAEA-ARQEKNRAAVVALNAEIRRAKAKLLEE 343
           + D E++Q      KAEA A +++NRAAVVA  AE+ RA ++ LEE
Sbjct: 239 NADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPRALSRALEE 284

>Y404_LISMF (Q723S2) UPF0365 protein LMOf2365_0404|
          Length = 314

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +2

Query: 218 SVDAEISQCV---EKAEA-ARQEKNRAAVVALNAEIRRAKAKLLEE 343
           + D E++Q      KAEA A +++NRAAVVA  AE+ RA ++ LEE
Sbjct: 239 NADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPRALSRALEE 284

>Y392_LISMO (Q92EP8) UPF0365 protein lmo0392|
          Length = 314

 Score = 36.2 bits (82), Expect = 0.084
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
 Frame = +2

Query: 218 SVDAEISQCV---EKAEA-ARQEKNRAAVVALNAEIRRAKAKLLEE 343
           + D E++Q      KAEA A +++NRAAVVA  AE+ RA ++ LEE
Sbjct: 239 NADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPRALSRALEE 284

>BIN3_XENLA (Q5PPZ5) Bridging integrator 3 homolog|
          Length = 252

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = +2

Query: 92  EMTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQ 271
           ++  + ++T +D   ++ D ++ EK+N       DP  R Y SV   ++  V++ E A Q
Sbjct: 74  DVDFLQMVTALDTAMKRMDAFNQEKVNQIQKTVMDPLKR-YSSVFPSLNMAVKRREQALQ 132

Query: 272 EKNR 283
           +  R
Sbjct: 133 DYKR 136

>CLPB_RICCN (Q92JK8) Chaperone clpB|
          Length = 857

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
 Frame = +2

Query: 101 VIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYG---------SVDAEISQCVEK 253
           +I I   + A+ ++ D++  +K+     A E   ++ Y          S   +  +  E+
Sbjct: 420 IIQIKIELAALKKENDEHSKKKIEHLTTALEKLESQSYDMGAKWQAEKSKLQQTQKLKEE 479

Query: 254 AEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVAA 433
            + +R E  RA   A  A+    K  ++ E + KLQ       KGL K E+ + SD +A+
Sbjct: 480 LDRSRNELERAERDANLAKASELKYGIIPEIMKKLQEAESMDNKGLLK-EIVSESD-IAS 537

Query: 434 LPDRIQSIP 460
           +  RI  IP
Sbjct: 538 IISRITGIP 546

>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase|
          Length = 883

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +2

Query: 107 DILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRA 286
           ++L ++    +K  +YD EKL  AN   E+   +L G ++ EI    ++ +     K + 
Sbjct: 502 EVLEQIRETEEKLKEYDLEKLEEANEKAEELKKKLAG-LEGEIKSLEDEIKKGELLKKKL 560

Query: 287 AVVALN-AEIRRAKAKLLEEDLPKLQRLALKKVKGL 391
           A+V     E+   +A LL E    L++L    VK L
Sbjct: 561 ALVEKKLRELEEERASLLGE----LKKLGFGDVKEL 592

>WBL_DROME (O44342) Protein windbeutel precursor (Erp29 homolog)|
          Length = 257

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
 Frame = +2

Query: 224 DAEISQCVEKAEAAR-------QEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKV 382
           DAE  + +EK +A +       Q++N  A +    +I       LEE+  +L RL   KV
Sbjct: 165 DAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKV 224

Query: 383 KGLTKEELATRSDLV 427
               KEEL  + +++
Sbjct: 225 TEAKKEELLRKLNIL 239

>DESP_HUMAN (P15924) Desmoplakin (DP) (250/210 kDa paraneoplastic pemphigus|
            antigen)
          Length = 2871

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 239  QCVEKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRL--ALKKVKGLTKEELAT 412
            Q +E +   ++ KN+   V    E    K K+LE+D  +LQRL   L + K   + E   
Sbjct: 1790 QALEASNRIQESKNQCTQVVQERESLLVKIKVLEQDKARLQRLEDELNRAKSTLEAETRV 1849

Query: 413  RSDL 424
            +  L
Sbjct: 1850 KQRL 1853

>CLPB_RICPR (Q9ZEA9) Chaperone clpB|
          Length = 858

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 25/71 (35%), Positives = 36/71 (50%)
 Frame = +2

Query: 248 EKAEAARQEKNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLV 427
           E+ E AR +  RA   A  A+    K  ++ E + KLQ       KGL K E+ + SD +
Sbjct: 478 EELEQARIDLERAERDANLAKASELKYGIIPEIMNKLQEAENMDNKGLLK-EIVSESD-I 535

Query: 428 AALPDRIQSIP 460
           A++  RI  IP
Sbjct: 536 ASIISRITGIP 546

>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)|
          Length = 1157

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 137 QKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRAAV 292
           QK ++  A++  G NVA E      YG  D E     EK E   +E  RAA+
Sbjct: 369 QKVEESQADEARGENVAEESEIG--YGHEDREGDNDEEKEEEDSEENRRAAL 418

>PLEC1_HUMAN (Q15149) Plectin-1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)|
          Length = 4684

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
 Frame = +2

Query: 149  KYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEAARQEKNRAA--VVALNAEIRRA 322
            K +AE+        E+   R     + E+ +  + AE   Q++  A   ++ L AE  + 
Sbjct: 1803 KEEAEREARRRGKAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQG 1862

Query: 323  KAK--LLEEDLPKLQR---LALKKVKGLTKEELATRSDLVAALPDRIQSIPDGSSSATK 484
            + +  LLEE+L +LQR    A +K + L  E    R+++   L  + ++  +  S++ K
Sbjct: 1863 EQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKAKAEEESRSTSEK 1921

>Y763_TREPA (O83744) Hypothetical protein TP0763|
          Length = 313

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/52 (42%), Positives = 29/52 (55%)
 Frame = +2

Query: 275 KNRAAVVALNAEIRRAKAKLLEEDLPKLQRLALKKVKGLTKEELATRSDLVA 430
           KNR  +  L+AE   A A LLEE++    R+AL++V  L  E L   SD  A
Sbjct: 97  KNRRLLRYLDAEDWSALAALLEEEVFTRNRVALRRV-SLLSESLILLSDFEA 147

>PLEC1_CRIGR (Q9JI55) Plectin-1 (PLTN) (PCN) (300-kDa intermediate|
            filament-associated protein) (IFAP300) (Fragment)
          Length = 4473

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
 Frame = +2

Query: 83   RAAEMTVIDILTRVDAICQKYDKYDAEKLNGANVAGEDPFARLYGSVDAEISQCVEKAEA 262
            +A E+     L + DA  QK +   AE+        E+   R     + E+ +  + AE 
Sbjct: 1573 QAEEVAQQRSLAQADAEKQKEE---AEREARRRGKAEEQAVRQRELAEQELEKQRQLAEG 1629

Query: 263  ARQEKNRAA--VVALNAEIRRAKAK--LLEEDLPKLQR---LALKKVKGLTKEELATRSD 421
              Q++  A   ++ L AE  + + +  LLEE+L +LQR    A  K + L  E    R++
Sbjct: 1630 TAQQRLAAEQELIRLRAETEQGEQQRQLLEEELARLQREATAATHKRQELEAELAKVRAE 1689

Query: 422  LVAALPDRIQSIPDGSSSATK 484
            +   L  + ++  +  S++ K
Sbjct: 1690 MEVLLASKARAEEESRSTSEK 1710


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,866,063
Number of Sequences: 219361
Number of extensions: 885875
Number of successful extensions: 3301
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3297
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)