ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIN4_ORYSA (Q6ZIB5) Probable auxin efflux carrier component 4 (O... 30 8.1
2IRS2A_XENLA (Q9DF49) Insulin receptor substrate 2-A (IRS-2-A) (I... 30 8.1
3IRS2B_XENLA (Q5RJW5) Insulin receptor substrate 2-B (IRS-2-B) 30 8.1

>PIN4_ORYSA (Q6ZIB5) Probable auxin efflux carrier component 4 (OsPIN4)|
          Length = 370

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 225 WSLPFVVERSLQLKM*WQPLILI-FGLRMYWLVGRG 329
           W+   VV+ ++   M W PL+L+ F LR  W+VG G
Sbjct: 134 WAQDLVVQIAVVQSMVWFPLLLMAFELRKAWVVGGG 169



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>IRS2A_XENLA (Q9DF49) Insulin receptor substrate 2-A (IRS-2-A) (Insulin receptor|
           substrate-unique) (Insulin receptor
           substrate-undetermined designation) (xIRS-u)
          Length = 1074

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 356 DALTRPNGLRV---P*GKFYLADAGYGAKPGFLPPFRGVRYHLNEWGNNPPINEK 511
           + LTRP+   V   P    +++   YG+ PG L  FR      +  GN PPI E+
Sbjct: 436 ETLTRPSSSSVCGSPSDGGFISSDEYGSSPGDLRYFRVRSNTPDSLGNTPPIQEE 490



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>IRS2B_XENLA (Q5RJW5) Insulin receptor substrate 2-B (IRS-2-B)|
          Length = 1077

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 356 DALTRPNGLRV---P*GKFYLADAGYGAKPGFLPPFRGVRYHLNEWGNNPPINEK 511
           + LTRP+   V   P    +++   YG+ PG L  FR      +  GN PPI E+
Sbjct: 439 ETLTRPSSSSVCGSPSDGGFISSDEYGSSPGDLRYFRVRSNTPDSLGNTPPIQEE 493


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,864,557
Number of Sequences: 219361
Number of extensions: 2221038
Number of successful extensions: 4570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4570
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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