ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18n15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full i... 242 8e-61
2gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putativ... 86 1e-13
3ref|XM_470137.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-11
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
6gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic ... 78 3e-11
7emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing f... 74 4e-10
8gb|AY104025.1| Zea mays PCO095832 mRNA sequence 74 4e-10
9emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing ... 72 2e-09
10ref|XM_473455.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
11emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14gb|AY112267.1| Zea mays CL5157_2 mRNA sequence 60 7e-06
15ref|XM_478113.1| Oryza sativa (japonica cultivar-group), mRNA 58 3e-05
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
17dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
18dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
19dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
20dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
21dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
22gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCO... 48 0.026
23gb|AY109068.1| Zea mays PCO068743 mRNA sequence 46 0.10
24gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 44 0.40
25gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete seq... 44 0.40
26gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, com... 42 1.6
27ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA 40 6.2
28gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's H... 40 6.2
29gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, co... 40 6.2
30gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, co... 40 6.2
31gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerizati... 40 6.2
32gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerizati... 40 6.2
33gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer... 40 6.2
34gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.2
35emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on ch... 40 6.2
36emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, comp... 40 6.2
37emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, ... 40 6.2
38gb|AC145931.4| Gallus gallus BAC clone CH261-32O1 from chromosom... 40 6.2
39gb|AC004056.1|AC004056 Homo sapiens chromosome 4 clone B227H22 m... 40 6.2
40gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, comp... 40 6.2
41gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete... 40 6.2
42gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds 40 6.2 
>gb|BT009545.1| Triticum aestivum clone wr1.pk148.e12:fis, full insert mRNA
           sequence
          Length = 2114

 Score =  242 bits (122), Expect = 8e-61
 Identities = 137/142 (96%)
 Strand = Plus / Minus

                                                                       
Query: 12  acaccgcaaaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagagga 71
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 429 acacggcaaaggtgaggagcaagatgacgtacgcgagcaccaacgagaagttcaagagga 370

                                                                       
Query: 72  ccctggacggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacg 131
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 369 ccctggacggcatccagatcgagatgcaggccaccgaccccagcgaaatgagcctcgacg 310

                                 
Query: 132 tgatcaaggagcgcgcacacta 153
           |||||||||||||||| |||||
Sbjct: 309 tgatcaaggagcgcgcgcacta 288



 Score =  145 bits (73), Expect = 1e-31
 Identities = 76/77 (98%)
 Strand = Plus / Minus

                                                                       
Query: 219 ttatgtcaattatagatttggcggtgtgactcttgaaactttcttgatgatttgtggctt 278
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ttatgtcaaatatagatttggcggtgtgactcttgaaactttcttgatgatttgtggctt 195

                            
Query: 279 tgttaccgtgtcgaaag 295
           |||||||||||||||||
Sbjct: 194 tgttaccgtgtcgaaag 178



 Score =  111 bits (56), Expect = 2e-21
 Identities = 105/120 (87%), Gaps = 6/120 (5%)
 Strand = Plus / Minus

                                                                       
Query: 335 tctatcatgtaatccgttccttcttccgctgcccatttatatgccgggcgttatgctgct 394
           |||||||||||||| |||| || |||   |||||||| ||||||||||| ||||||||||
Sbjct: 138 tctatcatgtaatctgttcttt-ttcttgtgcccattgatatgccgggccttatgctgct 80

                                                                       
Query: 395 gcactg-----ttcttccaagttctggttataaataattaaatgttctgtttggattcgt 449
           ||||||     ||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 79  gcactgcactgttcttccaagttacggttataaataattaaatgttctgtttggattcgt 20
to top
>gb|AY542311.1| Sorghum bicolor clone SB20O07 b1-1, b1-2, putative genetic modifier,
              hypothetical protein, putative NAM protein, putative
              cis-zeatin O-glucosyltransferases, putative small nuclear
              ribonucleoprotein, putative cis-zeatin
              O-glucosyltransferase, putative glutathione peroxidase,
              putative copper-exporting ATPases, putative
              serine/threonine dehydratase, and putative actin
              depolymerizing factor genes, complete cds; and hypothetical
              protein gene, partial cds
          Length = 157237

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 94/111 (84%)
 Strand = Plus / Plus

                                                                          
Query: 20     aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 79
              ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 148306 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 148365

                                                                 
Query: 80     ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 130
              ||||||||| | ||| |||||||||||||||||||||| || ||| |||||
Sbjct: 148366 ggcatccaggtggagctgcaggccaccgaccccagcgagatgagcatggac 148416
to top
>ref|XM_470137.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 703

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                       
Query: 23  gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 82
           |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 415 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 474

                                                                      
Query: 83  atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 141
            ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 475 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 533
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                            
Query: 23       gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 82
                |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 34127183 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 34127242

                                                                           
Query: 83       atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 141
                 ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 34127243 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 34127301
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                            
Query: 23       gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 82
                |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 34217655 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 34217714

                                                                           
Query: 83       atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 141
                 ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 34217715 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 34217773
to top
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete
             sequence
          Length = 163828

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 99/119 (83%)
 Strand = Plus / Plus

                                                                         
Query: 23    gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 82
             |||||||||||||||  |||||| ||| |||||||   |||||||| |   || ||||||
Sbjct: 90995 gtgaggagcaagatggtgtacgcgagctccaacgaagggttcaagaaggagctcgacggc 91054

                                                                        
Query: 83    atccagatcgagatgcaggccaccgaccccagcgaaatcagcctggacgtgatcaagga 141
              ||||||||||  ||||||||||||||||||||||  ||| ||| |||||| |||||||
Sbjct: 91055 gtccagatcgacctgcaggccaccgaccccagcgagctcaccctcgacgtgctcaagga 91113
to top
>emb|X80820.1|ZMABP1F Z.mays ABP1 mRNA for actin-depolymerizing factor
          Length = 589

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 26  aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 85
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   ||||||||||||
Sbjct: 374 aggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatc 433

                                                    
Query: 86  cagatcgagatgcaggccaccgaccccagcgaaatcagcct 126
           |||  |||||| |||||||||||||||||||| || |||||
Sbjct: 434 cagtgcgagatccaggccaccgaccccagcgagatgagcct 474
to top
>gb|AY104025.1| Zea mays PCO095832 mRNA sequence
          Length = 894

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 85/101 (84%)
 Strand = Plus / Plus

                                                                       
Query: 26  aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 85
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   ||||||||||||
Sbjct: 360 aggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatc 419

                                                    
Query: 86  cagatcgagatgcaggccaccgaccccagcgaaatcagcct 126
           |||  |||||| |||||||||||||||||||| || |||||
Sbjct: 420 cagtgcgagatccaggccaccgaccccagcgagatgagcct 460
to top
>emb|X97725.1|ZMABP2 Z.mays ZmABP2 mRNA for actin depolymerizing factor
          Length = 546

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 84/100 (84%)
 Strand = Plus / Plus

                                                                       
Query: 27  ggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatcc 86
           |||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||||||||
Sbjct: 312 ggagcaagatgctgtacgccagctccaaggacaggttcaggagggagctggacggcatcc 371

                                                   
Query: 87  agatcgagatgcaggccaccgaccccagcgaaatcagcct 126
           ||  |||||| |||||||||||||||||||| || |||||
Sbjct: 372 agtgcgagatccaggccaccgaccccagcgagatgagcct 411
to top
>ref|XM_473455.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 420

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 79
           ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 286 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 345

                                                              
Query: 80  ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 130
           || |||||| | ||| ||||||| ||||| |||||||| || ||| |||||
Sbjct: 346 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 396
to top
>emb|AL606647.3|OSJN00096 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24,
             complete sequence
          Length = 127506

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                         
Query: 20    aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 79
             ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 61509 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 61450

                                                                
Query: 80    ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 130
             || |||||| | ||| ||||||| ||||| |||||||| || ||| |||||
Sbjct: 61449 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 61399
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Minus

                                                                            
Query: 20       aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 79
                ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 27792839 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 27792780

                                                                   
Query: 80       ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 130
                || |||||| | ||| ||||||| ||||| |||||||| || ||| |||||
Sbjct: 27792779 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 27792729
to top
>dbj|AK069329.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018P16, full
           insert sequence
          Length = 778

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 91/111 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  aaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggac 79
           ||||||||||||||||||  |||||| ||| |||| ||   ||||||||||   ||||||
Sbjct: 372 aaggtgaggagcaagatgctgtacgcgagctccaaggaccggttcaagagggagctggac 431

                                                              
Query: 80  ggcatccagatcgagatgcaggccaccgaccccagcgaaatcagcctggac 130
           || |||||| | ||| ||||||| ||||| |||||||| || ||| |||||
Sbjct: 432 gggatccaggtggagctgcaggcgaccgatcccagcgagatgagcatggac 482
to top
>gb|AY112267.1| Zea mays CL5157_2 mRNA sequence
          Length = 779

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 61  gttcaagaggaccctggacggcatccagatcgagatgcaggccaccgaccccagcgaaat 120
           ||||||||||   ||||| ||||||||| | ||| |||||||||||||||||||||| ||
Sbjct: 490 gttcaagagggagctggagggcatccagctggagctgcaggccaccgaccccagcgagat 431

                     
Query: 121 cagcctggac 130
            ||| |||||
Sbjct: 430 gagcatggac 421
to top
>ref|XM_478113.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 26  aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 85
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 363 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 422

                                                    
Query: 86  cagatcgagatgcaggccaccgaccccagcgaaatcagcct 126
           |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 423 cagtgcgagattcaggccacagaccccagcgagatgagcct 463
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                            
Query: 26       aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 85
                ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 17688190 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 17688249

                                                         
Query: 86       cagatcgagatgcaggccaccgaccccagcgaaatcagcct 126
                |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 17688250 cagtgcgagattcaggccacagaccccagcgagatgagcct 17688290
to top
>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1136_F08
          Length = 134988

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                         
Query: 26    aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 85
             ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 92223 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 92282

                                                      
Query: 86    cagatcgagatgcaggccaccgaccccagcgaaatcagcct 126
             |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 92283 cagtgcgagattcaggccacagaccccagcgagatgagcct 92323
to top
>dbj|AK072662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023134C12, full
           insert sequence
          Length = 884

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 83/101 (82%)
 Strand = Plus / Plus

                                                                       
Query: 26  aggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggcatc 85
           ||||||||||||  |||||| ||| |||| || | ||||| ||||   |||||||| |||
Sbjct: 363 aggagcaagatgctgtacgcgagctccaaggacaggttcaggagggagctggacggaatc 422

                                                    
Query: 86  cagatcgagatgcaggccaccgaccccagcgaaatcagcct 126
           |||  |||||| |||||||| ||||||||||| || |||||
Sbjct: 423 cagtgcgagattcaggccacagaccccagcgagatgagcct 463
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                            
Query: 22       ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 81
                ||||||||||||||||  ||| || ||| |||| ||   ||||||||||   ||||||||
Sbjct: 26938896 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 26938837

                                              
Query: 82       catccagatcgagatgcaggccaccgaccc 111
                ||||||| | ||| |||||||||| |||||
Sbjct: 26938836 catccaggtggagctgcaggccactgaccc 26938807
to top
>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1001_D02
          Length = 129081

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Minus

                                                                          
Query: 22     ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 81
              ||||||||||||||||  ||| || ||| |||| ||   ||||||||||   ||||||||
Sbjct: 117439 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 117380

                                            
Query: 82     catccagatcgagatgcaggccaccgaccc 111
              ||||||| | ||| |||||||||| |||||
Sbjct: 117379 catccaggtggagctgcaggccactgaccc 117350
to top
>dbj|AK069605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024H08, full
           insert sequence
          Length = 914

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                       
Query: 22  ggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacgg 81
           ||||||||||||||||  ||| || ||| |||| ||   ||||||||||   ||||||||
Sbjct: 417 ggtgaggagcaagatgctgtatgctagctccaaggatcggttcaagagggagctggacgg 476

                                         
Query: 82  catccagatcgagatgcaggccaccgaccc 111
           ||||||| | ||| |||||||||| |||||
Sbjct: 477 catccaggtggagctgcaggccactgaccc 506
to top
>gb|U58278.1|TAU58278 Triticum aestivum actin-binding protein WCOR719 (Wcor719) mRNA,
           complete cds
          Length = 648

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 74  ctggacggcatccagatcgagatgcaggccaccgaccccagcga 117
           ||||||||| | ||||||||  |||||||||||||| |||||||
Sbjct: 427 ctggacggcgtgcagatcgacgtgcaggccaccgacgccagcga 470
to top
>gb|AY109068.1| Zea mays PCO068743 mRNA sequence
          Length = 731

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 71/87 (81%)
 Strand = Plus / Plus

                                                                       
Query: 23  gtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagaggaccctggacggc 82
           ||||||||||||||||  ||||| ||| |||| |||| ||||||| ||   |||||||||
Sbjct: 416 gtgaggagcaagatgatctacgccagctccaaggagaggttcaagcgggagctggacggc 475

                                      
Query: 83  atccagatcgagatgcaggccaccgac 109
           || ||| | ||  | ||||||||||||
Sbjct: 476 attcaggtggatctccaggccaccgac 502
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 105     ccgaccccagcgaaatcagcctggac 130
               ||||||||||||||||||||| ||||
Sbjct: 4866091 ccgaccccagcgaaatcagccgggac 4866116
to top
>gb|AC135102.16| Medicago truncatula clone mth2-8m3, complete sequence
          Length = 144042

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 17    gcaaaggtgaggagcaagatgacgtacgcaagcaccaacgagaagttcaagagg 70
             |||| |||||| ||||||||||  || ||||||||||| || | ||||||||||
Sbjct: 67059 gcaagggtgagaagcaagatgatttatgcaagcaccaaagaaaggttcaagagg 67112
to top
>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence
          Length = 180645

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 56     gagaagttcaagaggaccctg 76
              |||||||||||||||||||||
Sbjct: 138067 gagaagttcaagaggaccctg 138047
to top
>ref|NM_173884.2| Bos taurus tyrosine hydroxylase (TH), mRNA
          Length = 1706

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 72   ccctggacggcatccagatcgagatgcaggcc 103
            ||||||||||| |||||  |||||||||||||
Sbjct: 1433 ccctggacggcgtccaggacgagatgcaggcc 1464
to top
>gb|AC106374.6| Rattus norvegicus 4 BAC CH230-112C2 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 163448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   tggttataaataattaaatg 433
             ||||||||||||||||||||
Sbjct: 12286 tggttataaataattaaatg 12305
to top
>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    atttattatgtcaattatag 233
              ||||||||||||||||||||
Sbjct: 200000 atttattatgtcaattatag 200019
to top
>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    atttattatgtcaattatag 233
              ||||||||||||||||||||
Sbjct: 127796 atttattatgtcaattatag 127777
to top
>gb|AF195612.1|AF195612 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1349

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 74  ctggacggcatccagatcgagatgcaggccaccgaccccagcga 117
           ||||||||| | || |||||  |||||||||||||| |||||||
Sbjct: 691 ctggacggcgtgcaaatcgacgtgcaggccaccgacgccagcga 734
to top
>gb|AF196350.1|AF196350 Lophopyrum elongatum actin depolymerization factor-like protein
           (ESI28) gene, complete cds
          Length = 1013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 74  ctggacggcatccagatcgagatgcaggccaccgaccccagcga 117
           ||||||||| | || |||||  |||||||||||||| |||||||
Sbjct: 691 ctggacggcgtgcaaatcgacgtgcaggccaccgacgccagcga 734
to top
>gb|AC005297.1| Homo sapiens X BAC GS1-466O4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177503

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 214    atttattatgtcaattatagattt 237
              ||||| ||||||||||||||||||
Sbjct: 150937 atttagtatgtcaattatagattt 150960
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 214     atttattatgtcaattatagattt 237
               ||||||||| ||||||||||||||
Sbjct: 2915396 atttattatttcaattatagattt 2915373
to top
>emb|BX072552.10| Mouse DNA sequence from clone RP23-147I24 on chromosome X, complete
             sequence
          Length = 160230

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   ttatgtcaattatagatttg 238
             ||||||||||||||||||||
Sbjct: 31945 ttatgtcaattatagatttg 31926
to top
>emb|BX004970.8| Zebrafish DNA sequence from clone DKEY-9I4, complete sequence
          Length = 246777

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   caaaccaaccatccatccaa 179
             ||||||||||||||||||||
Sbjct: 93024 caaaccaaccatccatccaa 93043
to top
>emb|AL954307.7| Zebrafish DNA sequence from clone CH211-201C19, complete sequence
          Length = 175575

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 159    gcaaaccaaccatccatcca 178
              ||||||||||||||||||||
Sbjct: 130314 gcaaaccaaccatccatcca 130295
to top
>gb|AC145931.4| Gallus gallus BAC clone CH261-32O1 from chromosome unknown,
           complete sequence
          Length = 202356

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 taattaaatgttctgtttgg 443
           ||||||||||||||||||||
Sbjct: 556 taattaaatgttctgtttgg 537
to top
>gb|AC004056.1|AC004056 Homo sapiens chromosome 4 clone B227H22 map 4q25, complete sequence
          Length = 138799

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ttcttccaagttctggttat 420
             ||||||||||||||||||||
Sbjct: 79992 ttcttccaagttctggttat 79973
to top
>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   atttattatgtcaattatag 233
             ||||||||||||||||||||
Sbjct: 26917 atttattatgtcaattatag 26898
to top
>gb|M36705.1|BOVTYRHAA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1706

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 72   ccctggacggcatccagatcgagatgcaggcc 103
            ||||||||||| |||||  |||||||||||||
Sbjct: 1433 ccctggacggcgtccaggacgagatgcaggcc 1464
to top
>gb|M36794.1|BOVTHA Bovine tyrosine hydroxylase mRNA, complete cds
          Length = 1696

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 72   ccctggacggcatccagatcgagatgcaggcc 103
            ||||||||||| |||||  |||||||||||||
Sbjct: 1429 ccctggacggcgtccaggacgagatgcaggcc 1460


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,009,688
Number of Sequences: 3902068
Number of extensions: 4009688
Number of successful extensions: 79716
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79471
Number of HSP's gapped (non-prelim): 236
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top