ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd18n10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF469491.1| Triticum aestivum RUB1-conjugating enzyme mRNA, p... 135 2e-28
2dbj|AK073821.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 9e-21
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
4dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic D... 100 9e-18
5ref|NM_195275.1| Oryza sativa (japonica cultivar-group) putative... 68 3e-08
6dbj|AK066484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
7dbj|AK064839.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
8ref|XM_482060.1| Oryza sativa (japonica cultivar-group), mRNA 62 2e-06
9ref|XM_507579.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
10ref|XM_507208.2| PREDICTED Oryza sativa (japonica cultivar-group... 62 2e-06
11gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
12dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13dbj|AK104511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14dbj|AK104158.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
15dbj|AK070541.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
17gb|AY591341.1| Zea mays putative RUB1 conjugating enzyme mRNA, c... 54 5e-04
18gb|AY104531.1| Zea mays PCO100562 mRNA sequence 54 5e-04
19gb|AE008766.1| Salmonella typhimurium LT2, section 70 of 220 of ... 46 0.12
20emb|AL627270.1| Salmonella enterica serovar Typhi (Salmonella ty... 46 0.12
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
22gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 46 0.12
23dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
24gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 46 0.12
25gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 46 0.12
26gb|M84575.1|STYDCP Salmonella typhimurium dipeptidyl carboxypept... 46 0.12
27gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's ... 44 0.46
28gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete seq... 44 0.46
29emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 i... 42 1.8
30gb|AE006018.1| Caulobacter crescentus CB15 section 344 of 359 of... 42 1.8
31gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21 geno... 42 1.8
32dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.8
33gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome... 40 7.2
34gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 7.2
35gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, c... 40 7.2
36gb|AC129203.4| Mus musculus BAC clone RP24-225M1 from chromosome... 40 7.2
37gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosom... 40 7.2
38emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chr... 40 7.2
39emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chro... 40 7.2
40gb|AC026843.9| Homo sapiens chromosome 11, clone RP11-261E12, co... 40 7.2
41gb|AC022695.9| Homo sapiens chromosome 8, clone RP11-700E23, com... 40 7.2
42gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete ... 40 7.2
43gb|AC155308.2| Mus musculus BAC clone RP24-150P15 from chromosom... 40 7.2
44gb|AC173115.2| Mus musculus BAC clone RP23-26D2 from chromosome ... 40 7.2
45gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, compl... 40 7.2 
>gb|AF469491.1| Triticum aestivum RUB1-conjugating enzyme mRNA, partial cds
          Length = 783

 Score =  135 bits (68), Expect = 2e-28
 Identities = 145/162 (89%), Gaps = 7/162 (4%)
 Strand = Plus / Plus

                                                                       
Query: 13  tttaaaccttctttt-ctcacaacccaacgacga-ggatccgttgaatcatgaagctgcg 70
           ||||||||||||||| ||| |||||||| ||||| ||| || |||||||||||||| |||
Sbjct: 529 tttaaaccttctttttctcgcaacccaatgacgaaggacccattgaatcatgaagccgcg 588

                                                                       
Query: 71  gccgtcctccga-gacaacccgcag-aagttccagagaaacgtccagatggcgatgtc-t 127
           |||||||||||| |||||||||||| | |||||||||||||||||| |||||||||||  
Sbjct: 589 gccgtcctccgaggacaacccgcagnangttccagagaaacgtccaaatggcgatgtcgg 648

                                                     
Query: 128 ggaggcta-tgtcgataacaccca-tttcccaaggtgcaagt 167
           |||||||| | ||||| ||||||| |||||||||||||||||
Sbjct: 649 ggaggctattntcgattacacccattttcccaaggtgcaagt 690
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>dbj|AK073821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069E18, full
           insert sequence
          Length = 898

 Score =  109 bits (55), Expect = 9e-21
 Identities = 112/131 (85%)
 Strand = Plus / Plus

                                                                       
Query: 11  ggtttaaaccttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcg 70
           ||||| ||||||||||||   |||||||| ||||||||||| ||||| ||||| ||||||
Sbjct: 534 ggtttgaaccttcttttcattcaacccaatgacgaggatcccttgaaccatgatgctgcg 593

                                                                       
Query: 71  gccgtcctccgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctgga 130
           || |||||||||||  |||| || ||||||| ||| || || |||| ||||||||| |||
Sbjct: 594 gctgtcctccgagatgacccacaaaagttccggaggaatgttcagacggcgatgtcggga 653

                      
Query: 131 ggctatgtcga 141
           |||||||||||
Sbjct: 654 ggctatgtcga 664
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 95/110 (86%)
 Strand = Plus / Plus

                                                                           
Query: 32      caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaacccg 91
               |||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||  |||| 
Sbjct: 9309185 caacccaatgacgaggatcccttgaaccatgatgctgcggctgtcctccgagatgaccca 9309244

                                                                 
Query: 92      cagaagttccagagaaacgtccagatggcgatgtctggaggctatgtcga 141
               || ||||||| ||| || || |||| ||||||||| ||||||||||||||
Sbjct: 9309245 caaaagttccggaggaatgttcagacggcgatgtcgggaggctatgtcga 9309294
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>dbj|AP005684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1742_G01
          Length = 154912

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 95/110 (86%)
 Strand = Plus / Plus

                                                                          
Query: 32     caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaacccg 91
              |||||||| ||||||||||| ||||| ||||| |||||||| |||||||||||  |||| 
Sbjct: 134476 caacccaatgacgaggatcccttgaaccatgatgctgcggctgtcctccgagatgaccca 134535

                                                                
Query: 92     cagaagttccagagaaacgtccagatggcgatgtctggaggctatgtcga 141
              || ||||||| ||| || || |||| ||||||||| ||||||||||||||
Sbjct: 134536 caaaagttccggaggaatgttcagacggcgatgtcgggaggctatgtcga 134585
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>ref|NM_195275.1| Oryza sativa (japonica cultivar-group) putative
           ubiquitin-conjugating enzyme (OSJNBb0038H12.1), mRNA
          Length = 977

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 17  aaccttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtc 76
           |||||||||||  | ||||| ||||| |||||||||||||| |||||||| || || |||
Sbjct: 514 aaccttctttttacgcaaccaaacgatgaggatccgttgaaccatgaagcagcagctgtc 573

                         
Query: 77  ctccgagacaaccc 90
           ||||| ||||||||
Sbjct: 574 ctccgtgacaaccc 587
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>dbj|AK066484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070C18, full
           insert sequence
          Length = 942

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                       
Query: 17  aaccttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtc 76
           |||||||||||  | ||||| ||||| |||||||||||||| |||||||| || || |||
Sbjct: 546 aaccttctttttacgcaaccaaacgatgaggatccgttgaaccatgaagcagcagctgtc 605

                         
Query: 77  ctccgagacaaccc 90
           ||||| ||||||||
Sbjct: 606 ctccgtgacaaccc 619
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>dbj|AK064839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F24, full
            insert sequence
          Length = 2813

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                        
Query: 17   aaccttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtc 76
            |||||||||||  | ||||| ||||| |||||||||||||| |||||||| || || |||
Sbjct: 1642 aaccttctttttacgcaaccaaacgatgaggatccgttgaaccatgaagcagcagctgtc 1701

                          
Query: 77   ctccgagacaaccc 90
            ||||| ||||||||
Sbjct: 1702 ctccgtgacaaccc 1715
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>ref|XM_482060.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1033

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  cttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctc 79
           ||||||||||||||||| || || ||||| ||  | |||||||| || || || || || 
Sbjct: 511 cttcttttctcacaacctaatgatgaggaccctctaaatcatgaggcggcagcagttctt 570

                                                                      
Query: 80  cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
           |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 571 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 629
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>ref|XM_507579.1| PREDICTED Oryza sativa (japonica cultivar-group), P0690C12.28 mRNA
          Length = 1130

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  cttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctc 79
           ||||||||||||||||| || || ||||| ||  | |||||||| || || || || || 
Sbjct: 526 cttcttttctcacaacctaatgatgaggaccctctaaatcatgaggcggcagcagttctt 585

                                                                      
Query: 80  cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
           |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 586 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 644
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>ref|XM_507208.2| PREDICTED Oryza sativa (japonica cultivar-group), P0690C12.28 mRNA
          Length = 1195

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  cttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctc 79
           ||||||||||||||||| || || ||||| ||  | |||||||| || || || || || 
Sbjct: 553 cttcttttctcacaacctaatgatgaggaccctctaaatcatgaggcggcagcagttctt 612

                                                                      
Query: 80  cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
           |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 613 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 671
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0038H12 map E60284SA, complete sequence
          Length = 139190

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 32    caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaaccc 90
             ||||| ||||| |||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 23882 caaccaaacgatgaggatccgttgaaccatgaagcagcagctgtcctccgtgacaaccc 23824
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                          
Query: 32      caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaaccc 90
               ||||| ||||| |||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 5900001 caaccaaacgatgaggatccgttgaaccatgaagcagcagctgtcctccgtgacaaccc 5900059



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 350      actgctgttgtgcttgtttgg 370
                |||||||||||||||||||||
Sbjct: 20551242 actgctgttgtgcttgtttgg 20551222
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>dbj|AK104511.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H10, full
           insert sequence
          Length = 1130

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  cttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctc 79
           ||||||||||||||||| || || ||||| ||  | |||||||| || || || || || 
Sbjct: 526 cttcttttctcacaacctaatgatgaggaccctctaaatcatgaggcggcagcagttctt 585

                                                                      
Query: 80  cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
           |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 586 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 644
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>dbj|AK104158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H05, full
           insert sequence
          Length = 1033

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  cttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctc 79
           ||||||||||||||||| || || ||||| ||  | |||||||| || || || || || 
Sbjct: 511 cttcttttctcacaacctaatgatgaggaccctctaaatcatgaggcggcagcagttctt 570

                                                                      
Query: 80  cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
           |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 571 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 629
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>dbj|AK070541.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056A05, full
           insert sequence
          Length = 1195

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                       
Query: 20  cttcttttctcacaacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctc 79
           ||||||||||||||||| || || ||||| ||  | |||||||| || || || || || 
Sbjct: 553 cttcttttctcacaacctaatgatgaggaccctctaaatcatgaggcggcagcagttctt 612

                                                                      
Query: 80  cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
           |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 613 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 671
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                          
Query: 32      caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaaccc 90
               ||||| ||||| |||||||||||||| |||||||| || || |||||||| ||||||||
Sbjct: 5901187 caaccaaacgatgaggatccgttgaaccatgaagcagcagctgtcctccgtgacaaccc 5901245



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 350      actgctgttgtgcttgtttgg 370
                |||||||||||||||||||||
Sbjct: 20562514 actgctgttgtgcttgtttgg 20562494
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>gb|AY591341.1| Zea mays putative RUB1 conjugating enzyme mRNA, complete cds
          Length = 996

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 32  caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaaccc 90
           ||||| |||||||||||||| ||||| || |||||||| || |||||||| | ||||||
Sbjct: 610 caaccaaacgacgaggatcctttgaaccacgaagctgcagctgtcctccgtggcaaccc 668
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>gb|AY104531.1| Zea mays PCO100562 mRNA sequence
          Length = 985

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 32  caacccaacgacgaggatccgttgaatcatgaagctgcggccgtcctccgagacaaccc 90
           ||||| |||||||||||||| ||||| || |||||||| || |||||||| | ||||||
Sbjct: 610 caaccaaacgacgaggatcctttgaaccacgaagctgcagctgtcctccgtggcaaccc 668
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>gb|AE008766.1| Salmonella typhimurium LT2, section 70 of 220 of the complete genome
          Length = 27275

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 162  gcaagtaaagcgggcgggctggc 184
            |||||||||||||||||||||||
Sbjct: 2346 gcaagtaaagcgggcgggctggc 2368
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>emb|AL627270.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 6/20
          Length = 266050

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 162    gcaagtaaagcgggcgggctggc 184
              |||||||||||||||||||||||
Sbjct: 195170 gcaagtaaagcgggcgggctggc 195148
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                           
Query: 80       cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
                |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 17506376 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 17506318
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 162     gcaagtaaagcgggcgggctggc 184
               |||||||||||||||||||||||
Sbjct: 1424597 gcaagtaaagcgggcgggctggc 1424575
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>dbj|AP004465.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0690C12
          Length = 139693

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                         
Query: 80     cgagacaacccgcagaagttccagagaaacgtccagatggcgatgtctggaggctatgt 138
              |||||||||||  | |||||  ||||||| ||||||| ||| ||| |||||||||||||
Sbjct: 117221 cgagacaacccagaaaagtttgagagaaatgtccagagggcaatggctggaggctatgt 117163
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 162     gcaagtaaagcgggcgggctggc 184
               |||||||||||||||||||||||
Sbjct: 1478495 gcaagtaaagcgggcgggctggc 1478517
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 162     gcaagtaaagcgggcgggctggc 184
               |||||||||||||||||||||||
Sbjct: 1628376 gcaagtaaagcgggcgggctggc 1628398
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>gb|M84575.1|STYDCP Salmonella typhimurium dipeptidyl carboxypeptidase (dcp) gene,
           complete cds
          Length = 2841

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 162 gcaagtaaagcgggcgggctggc 184
           |||||||||||||||||||||||
Sbjct: 958 gcaagtaaagcgggcgggctggc 980
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>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227955

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 363   ttgtttggtggatgttctggaa 384
             ||||||||||||||||||||||
Sbjct: 62690 ttgtttggtggatgttctggaa 62669
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>gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete sequence
          Length = 112570

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 363   ttgtttggtggatgttctggaa 384
             ||||||||||||||||||||||
Sbjct: 52557 ttgtttggtggatgttctggaa 52578
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>emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 in linkage group 3,
              complete sequence
          Length = 200759

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 461    gtgggtggtgttgtgtcaaactgaa 485
              |||||||||||||| ||||||||||
Sbjct: 157451 gtgggtggtgttgtctcaaactgaa 157427
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>gb|AE006018.1| Caulobacter crescentus CB15 section 344 of 359 of the complete genome
          Length = 10978

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   atcatgaagctgcggccgtcc 77
            |||||||||||||||||||||
Sbjct: 5955 atcatgaagctgcggccgtcc 5975
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>gb|AC073166.7| Oryza sativa chromosome 10 BAC OSJNBb0064P21 genomic sequence, complete
             sequence
          Length = 142114

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   actgctgttgtgcttgtttgg 370
             |||||||||||||||||||||
Sbjct: 56532 actgctgttgtgcttgtttgg 56512
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>dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-677I18, complete
              sequence
          Length = 182429

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 14     ttaaaccttcttttctcacaa 34
              |||||||||||||||||||||
Sbjct: 136459 ttaaaccttcttttctcacaa 136479
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>gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome 13, complete sequence
          Length = 237111

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   tttgtgtcaagaagatgtga 350
             ||||||||||||||||||||
Sbjct: 57230 tttgtgtcaagaagatgtga 57211
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 426     gcgaaactcgcctgtatcgagctg 449
               |||||||||||||||| |||||||
Sbjct: 1068523 gcgaaactcgcctgtagcgagctg 1068546
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>gb|AC132901.11| Mus musculus chromosome 13, clone RP24-282A18, complete sequence
          Length = 187090

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   tgctgttgtgcttgtttggt 371
             ||||||||||||||||||||
Sbjct: 21889 tgctgttgtgcttgtttggt 21870
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>gb|AC129203.4| Mus musculus BAC clone RP24-225M1 from chromosome 16, complete sequence
          Length = 152208

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 391   tgtaacatgaagaagaaatg 410
             ||||||||||||||||||||
Sbjct: 37850 tgtaacatgaagaagaaatg 37831
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>gb|AC165347.4| Mus musculus BAC clone RP23-348B21 from chromosome 13, complete
             sequence
          Length = 205783

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 352   tgctgttgtgcttgtttggt 371
             ||||||||||||||||||||
Sbjct: 13436 tgctgttgtgcttgtttggt 13455
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>emb|AL670999.4| Mouse DNA sequence from clone RP23-168F16 on chromosome 4 Contains the
              (pseudo)gene for a novel protein similar to high-mobility
              group box 1 (Hmgb1), complete sequence
          Length = 226259

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    caggaaatgtatctatcata 326
              ||||||||||||||||||||
Sbjct: 143607 caggaaatgtatctatcata 143626
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>emb|CR352264.6| Mouse DNA sequence from clone RP23-344N9 on chromosome 4 Contains a high
              mobility group box 1 (Hmgb1) pseudogene, complete sequence
          Length = 185595

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    caggaaatgtatctatcata 326
              ||||||||||||||||||||
Sbjct: 102940 caggaaatgtatctatcata 102959
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>gb|AC026843.9| Homo sapiens chromosome 11, clone RP11-261E12, complete sequence
          Length = 166287

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   taacacccatttcccaaggt 161
             ||||||||||||||||||||
Sbjct: 56513 taacacccatttcccaaggt 56532



 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  taacacccatttcccaaggt 161
            ||||||||||||||||||||
Sbjct: 7633 taacacccatttcccaaggt 7614
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>gb|AC022695.9| Homo sapiens chromosome 8, clone RP11-700E23, complete sequence
          Length = 184759

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   tcaagaagatgtgactgctg 356
             ||||||||||||||||||||
Sbjct: 41394 tcaagaagatgtgactgctg 41413
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>gb|AC021269.4|AC021269 Homo sapiens, clone RP11-15D14, complete sequence
          Length = 144609

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    taacacccatttcccaaggt 161
              ||||||||||||||||||||
Sbjct: 101163 taacacccatttcccaaggt 101144
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>gb|AC155308.2| Mus musculus BAC clone RP24-150P15 from chromosome 13, complete
             sequence
          Length = 132564

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 350   actgctgttgtgcttgtttg 369
             ||||||||||||||||||||
Sbjct: 94447 actgctgttgtgcttgtttg 94428
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>gb|AC173115.2| Mus musculus BAC clone RP23-26D2 from chromosome 13, complete sequence
          Length = 221491

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 331   tttgtgtcaagaagatgtga 350
             ||||||||||||||||||||
Sbjct: 45527 tttgtgtcaagaagatgtga 45546
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>gb|AC147473.3| Mus musculus BAC clone RP24-353P11 from 13, complete sequence
          Length = 158972

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 350  actgctgttgtgcttgtttg 369
            ||||||||||||||||||||
Sbjct: 9919 actgctgttgtgcttgtttg 9900


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,277,850
Number of Sequences: 3902068
Number of extensions: 4277850
Number of successful extensions: 76877
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76641
Number of HSP's gapped (non-prelim): 233
length of query: 534
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 511
effective length of database: 17,143,297,704
effective search space: 8760225126744
effective search space used: 8760225126744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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