>INO80_KLULA (Q6CNY4) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1489

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +3

Query: 237  DDRLRQSKDKKVLPSRANKEENSVNDPIVADSVAFQDQVAHLFSEWCQVCDHPSACDAA 413
            D   RQ+K  +VL S+ +   +++ +    D V    ++ +L  E+ +VC+HP   + A
Sbjct: 995  DLTFRQAKLYQVLKSQVSGGYDAIENAAGNDDVTSDQKLVNLVMEFRKVCNHPDLFERA 1053

>ARP8_YEAST (Q12386) Actin-like protein ARP8|
          Length = 881

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 25/100 (25%), Positives = 42/100 (42%)
 Frame = +3

Query: 30  GRNKVATEFATSLVQTLITQDSASISELYDVLDALSKISRRPGSPDFLQQLTEIXXXXXX 209
           GR K A EFA +L +  I +   +      +   L  I+++  S D+L+           
Sbjct: 162 GRIKAAEEFAKTLKKIGIEKVETTTLPATGLFQPLMLINQKNYSSDYLK----------- 210

Query: 210 XXPGFAFGKDDRLRQSKDKKVLPSRANKEENSVNDPIVAD 329
                   KDD++   +D+K L +    + +S N P V D
Sbjct: 211 --------KDDQIFALRDRKFLRNNNTSQISSTNTPDVID 242

>FANCB_HUMAN (Q8NB91) Fanconi anemia group B protein (Protein FACB) (Fanconi|
           anemia-associated polypeptide of 95 kDa) (FAAP95)
          Length = 859

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 231 GKDDRLRQSKDKKVLPSRANKEENSVN--DPIVADSVAFQDQVAHLFSEWCQVCD 389
           GKDD    +++K+ L     +EENSV+  D  ++D+  FQD    +   W +V D
Sbjct: 432 GKDDNTSSAEEKECLVPLCGEEENSVHILDEKLSDN--FQDSEQLVEKIWYRVID 484

>RS6_PELLD (Q3B6M7) 30S ribosomal protein S6|
          Length = 133

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 18  LIDGGRNKVATEFATSLVQTLITQDSASISELYDV 122
           +IDGG    A   A  +VQ +IT+   SIS + D+
Sbjct: 12  IIDGGLQDEAIAAAMEMVQKVITEKGGSISSVLDI 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,861,028
Number of Sequences: 219361
Number of extensions: 1554099
Number of successful extensions: 4518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4517
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)